Wall clock time and date at job start Tue Mar 31 2020 08:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42893 * 109.47121 * 2 1 4 4 C 1.35675 * 117.00180 * 180.02562 * 3 2 1 5 5 C 1.38917 * 119.68903 * 179.97438 * 4 3 2 6 6 C 1.38376 * 119.11707 * 180.02562 * 5 4 3 7 7 C 1.38832 * 118.48123 * 359.97438 * 6 5 4 8 8 S 1.76199 * 120.35476 * 179.97438 * 7 6 5 9 9 O 1.42100 * 106.40283 * 23.55878 * 8 7 6 10 10 O 1.42095 * 106.40557 * 156.48678 * 8 7 6 11 11 N 1.65605 * 107.21644 * 270.02621 * 8 7 6 12 12 C 1.36943 * 119.99754 * 269.99756 * 11 8 7 13 13 H 1.07999 * 120.00008 * 329.39097 * 12 11 8 14 14 C 1.38808 * 119.99788 * 149.38814 * 12 11 8 15 15 N 1.31620 * 120.00288 * 337.58716 * 14 12 11 16 16 Si 1.86800 * 119.99839 * 157.59344 * 14 12 11 17 17 H 1.48506 * 109.47362 * 59.99642 * 16 14 12 18 18 H 1.48504 * 109.47192 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47131 * 299.99662 * 16 14 12 20 20 C 1.46497 * 120.00334 * 90.00032 * 11 8 7 21 21 C 1.53002 * 109.47239 * 113.75905 * 20 11 8 22 22 C 1.38047 * 119.28979 * 0.02562 * 7 6 5 23 23 N 1.31966 * 120.83585 * 359.97438 * 22 7 6 24 24 H 1.08999 * 109.47566 * 60.00268 * 1 2 3 25 25 H 1.09002 * 109.47581 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47130 * 300.00393 * 1 2 3 27 27 H 1.08994 * 109.46677 * 239.99815 * 2 1 3 28 28 H 1.08997 * 109.47054 * 119.99826 * 2 1 3 29 29 H 1.08009 * 120.44067 * 359.97438 * 5 4 3 30 30 H 1.07999 * 120.76043 * 179.97438 * 6 5 4 31 31 H 0.96998 * 120.00148 * 180.02562 * 15 14 12 32 32 H 1.09001 * 109.46954 * 233.75820 * 20 11 8 33 33 H 1.08997 * 109.46931 * 353.75506 * 20 11 8 34 34 H 1.09001 * 109.47078 * 299.99839 * 21 20 11 35 35 H 1.08995 * 109.46973 * 59.99994 * 21 20 11 36 36 H 1.09000 * 109.47179 * 179.97438 * 21 20 11 37 37 H 1.08003 * 119.57883 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3514 1.5250 -0.0005 5 6 3.8753 2.8116 -0.0011 6 6 5.2489 2.9792 -0.0022 7 6 6.0539 1.8481 -0.0021 8 16 7.8089 2.0043 -0.0042 9 8 8.0985 3.2850 0.5393 10 8 8.3201 0.7953 0.5401 11 7 8.2954 2.0472 -1.5866 12 6 8.6017 0.8836 -2.2405 13 1 9.0066 0.0462 -1.6916 14 6 8.3916 0.7804 -3.6087 15 7 7.5253 1.5732 -4.2032 16 14 9.3382 -0.4838 -4.6062 17 1 9.0380 -1.8448 -4.0934 18 1 8.9344 -0.3924 -6.0323 19 1 10.7945 -0.2197 -4.4858 20 6 8.3981 3.3298 -2.2869 21 6 9.8641 3.6118 -2.6223 22 6 5.4646 0.5998 -0.0015 23 7 4.1511 0.4718 -0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8932 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.2193 3.6696 -0.0015 30 1 5.6847 3.9674 -0.0031 31 1 7.3783 1.5008 -5.1592 32 1 7.8162 3.2886 -3.2077 33 1 8.0121 4.1243 -1.6484 34 1 10.4460 3.6530 -1.7015 35 1 10.2500 2.8173 -3.2608 36 1 9.9405 4.5659 -3.1437 37 1 6.0864 -0.2833 -0.0019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359067607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:42 Heat of formation + Delta-G solvation = -74.255235 kcal Electronic energy + Delta-G solvation = -22899.319791 eV Core-core repulsion = 19383.525644 eV Total energy + Delta-G solvation = -3515.794147 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.22647 -37.74766 -36.17652 -35.88293 -34.46314 -32.13308 -31.99150 -31.89798 -29.65995 -29.28762 -24.98310 -24.15836 -23.19491 -22.09624 -21.59120 -18.57075 -18.33678 -17.45730 -16.63380 -16.57127 -16.20420 -16.07016 -14.95530 -14.43530 -14.25097 -13.88701 -13.79663 -13.45470 -13.31464 -12.94300 -12.60588 -12.55485 -12.28774 -12.23980 -12.04475 -11.57634 -11.32128 -11.03459 -10.99798 -10.79214 -10.75619 -10.72027 -10.56221 -10.30117 -10.14929 -9.85597 -9.60423 -9.42749 -9.20653 -8.37934 -7.95497 -6.59445 -4.17373 1.27885 1.60510 1.77108 3.08191 3.12017 3.13261 3.17875 3.89662 4.02167 4.44022 4.63347 4.69009 4.96375 5.00116 5.05286 5.21266 5.24637 5.40482 5.47233 5.67284 5.76617 5.77806 5.93633 6.05465 6.09871 6.14589 6.29946 6.36529 6.49933 6.65488 6.78129 6.92186 7.14226 7.28302 7.42479 7.51402 8.10843 8.22641 8.62122 9.08536 10.29845 Molecular weight = 300.10amu Principal moments of inertia in cm(-1) A = 0.015999 B = 0.005449 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.740719 B = 5137.102147 C = 6009.642131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 O -0.310 6.310 4 C 0.342 3.658 5 C -0.215 4.215 6 C 0.042 3.958 7 C -0.737 4.737 8 S 2.537 3.463 9 O -1.003 7.003 10 O -0.984 6.984 11 N -0.798 5.798 12 C -0.243 4.243 13 H 0.113 0.887 14 C 0.039 3.961 15 N -0.822 5.822 16 Si 0.923 3.077 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.267 1.267 20 C 0.109 3.891 21 C -0.145 4.145 22 C 0.232 3.768 23 N -0.557 5.557 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.139 0.861 30 H 0.147 0.853 31 H 0.276 0.724 32 H 0.105 0.895 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.060 0.940 36 H 0.046 0.954 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.129 0.251 1.201 7.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.218 6.218 4 C 0.163 3.837 5 C -0.236 4.236 6 C 0.016 3.984 7 C -0.817 4.817 8 S 2.636 3.364 9 O -0.993 6.993 10 O -0.974 6.974 11 N -0.622 5.622 12 C -0.392 4.392 13 H 0.131 0.869 14 C -0.175 4.175 15 N -0.461 5.461 16 Si 0.748 3.252 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.192 1.192 20 C -0.017 4.017 21 C -0.205 4.205 22 C 0.076 3.924 23 N -0.281 5.281 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.157 0.843 30 H 0.165 0.835 31 H 0.087 0.913 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -7.490 -0.164 2.059 7.770 hybrid contribution -0.209 -0.037 -0.816 0.843 sum -7.699 -0.201 1.243 7.802 Atomic orbital electron populations 1.21812 0.93245 1.02705 1.03117 1.22583 0.94442 0.81384 1.02712 1.86202 1.17393 1.30555 1.87639 1.19905 0.83619 0.90405 0.89783 1.21040 0.96078 0.95437 1.11068 1.21059 0.91779 0.98548 0.87023 1.33154 1.33681 0.98852 1.15989 1.11183 0.74243 0.72760 0.78180 1.93333 1.84239 1.41794 1.79905 1.93345 1.78132 1.46605 1.79349 1.53926 1.66429 1.10296 1.31569 1.19835 1.33418 0.94699 0.91250 0.86919 1.25775 0.95464 0.97762 0.98533 1.69900 1.27848 1.36261 1.12048 0.86021 0.80293 0.80665 0.78174 1.19095 1.20636 1.19170 1.21462 0.97483 0.82988 0.99748 1.21887 0.97577 1.00149 1.00846 1.22105 0.88500 0.96445 0.85377 1.67370 1.07036 1.32805 1.20871 0.91717 0.90428 0.91828 0.91484 0.91668 0.84335 0.83539 0.91335 0.87769 0.92433 0.93703 0.92056 0.93490 0.81304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.28 37.16 0.38 -1.08 16 2 C 0.06 0.85 6.03 37.16 0.22 1.08 16 3 O -0.31 -5.05 10.12 -18.73 -0.19 -5.24 16 4 C 0.34 6.35 7.49 -17.12 -0.13 6.22 16 5 C -0.22 -3.79 10.04 -39.28 -0.39 -4.18 16 6 C 0.04 0.80 9.64 -39.31 -0.38 0.42 16 7 C -0.74 -15.65 5.99 -39.43 -0.24 -15.88 16 8 S 2.54 58.34 5.64 -107.50 -0.61 57.74 16 9 O -1.00 -24.08 15.99 -57.17 -0.91 -25.00 16 10 O -0.98 -24.57 16.16 -57.17 -0.92 -25.49 16 11 N -0.80 -18.39 2.98 -59.91 -0.18 -18.57 16 12 C -0.24 -5.75 8.67 -15.06 -0.13 -5.88 16 13 H 0.11 2.67 7.34 -52.49 -0.39 2.29 16 14 C 0.04 0.88 4.63 -17.43 -0.08 0.80 16 15 N -0.82 -19.18 11.06 55.49 0.61 -18.56 16 16 Si 0.92 17.92 29.61 -169.99 -5.03 12.89 16 17 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 18 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 19 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 20 C 0.11 2.32 5.84 -4.04 -0.02 2.30 16 21 C -0.15 -2.77 9.96 37.16 0.37 -2.40 16 22 C 0.23 4.84 10.68 -17.56 -0.19 4.65 16 23 N -0.56 -11.02 9.22 -13.33 -0.12 -11.15 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 28 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 29 H 0.14 2.00 8.06 -52.48 -0.42 1.58 16 30 H 0.15 2.51 7.71 -52.49 -0.40 2.11 16 31 H 0.28 6.07 8.31 -40.82 -0.34 5.73 16 32 H 0.10 2.32 5.52 -51.93 -0.29 2.03 16 33 H 0.06 1.15 7.03 -51.93 -0.37 0.79 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 1.21 7.41 -51.93 -0.38 0.82 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.17 3.37 7.62 -52.48 -0.40 2.97 16 LS Contribution 327.27 15.07 4.93 4.93 Total: -1.00 -28.63 327.27 -7.75 -36.37 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -4.74 Total: 6.04 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -0.58 Total: -13.96 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.31 Total: -48.28 kcal Atomic # 8 Polarization: -53.71 SS G_CDS: -2.03 Total: -55.73 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Atomic # 16 Polarization: 58.34 SS G_CDS: -0.61 Total: 57.74 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.63 -7.75 -36.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359067607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.881 kcal (2) G-P(sol) polarization free energy of solvation -28.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds