Wall clock time and date at job start Tue Mar 31 2020 08:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34632 * 116.99936 * 2 1 4 4 O 1.21389 * 120.00534 * 359.97438 * 3 2 1 5 5 C 1.48402 * 119.99845 * 179.97438 * 3 2 1 6 6 C 1.39633 * 120.49795 * 179.97438 * 5 3 2 7 7 C 1.38874 * 118.43340 * 180.25008 * 6 5 3 8 8 N 1.32042 * 119.25519 * 359.42176 * 7 6 5 9 9 C 1.32752 * 120.95165 * 0.61404 * 8 7 6 10 10 C 1.48166 * 119.14280 * 179.67907 * 9 8 7 11 11 C 1.39365 * 120.16213 * 179.70396 * 10 9 8 12 12 C 1.37968 * 119.93784 * 179.72384 * 11 10 9 13 13 C 1.38484 * 120.28243 * 0.55363 * 12 11 10 14 14 C 1.38074 * 120.33882 * 359.72508 * 13 12 11 15 15 C 1.38798 * 120.04997 * 359.97438 * 14 13 12 16 16 O 1.35613 * 120.13577 * 179.97438 * 15 14 13 17 17 C 1.34819 * 117.00422 * 354.40416 * 16 15 14 18 18 H 1.07999 * 119.99755 * 5.05876 * 17 16 15 19 19 C 1.38674 * 120.00038 * 185.06509 * 17 16 15 20 20 N 1.31544 * 120.00121 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00042 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46784 * 59.99664 * 21 19 17 23 23 H 1.48495 * 109.47496 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46895 * 300.00093 * 21 19 17 25 25 N 1.32449 * 121.71033 * 359.65927 * 9 8 7 26 26 H 1.08998 * 109.47193 * 300.00029 * 1 2 3 27 27 H 1.09004 * 109.46578 * 60.00178 * 1 2 3 28 28 H 1.09000 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.78487 * 359.97438 * 6 5 3 30 30 H 1.07995 * 120.37101 * 179.72439 * 7 6 5 31 31 H 1.08000 * 120.03206 * 359.97438 * 11 10 9 32 32 H 1.08003 * 119.85693 * 180.27675 * 12 11 10 33 33 H 1.08002 * 119.82781 * 179.74249 * 13 12 11 34 34 H 1.07997 * 119.97364 * 180.02562 * 14 13 12 35 35 H 0.96993 * 119.99763 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4022 2.2177 -0.0005 5 6 3.5452 1.2772 0.0006 6 6 4.1900 2.5158 0.0000 7 6 5.5785 2.5385 -0.0047 8 7 6.2425 1.3972 0.0031 9 6 5.6019 0.2345 0.0031 10 6 6.3870 -1.0220 0.0047 11 6 5.7363 -2.2544 0.0111 12 6 6.4720 -3.4215 0.0068 13 6 7.8560 -3.3746 0.0078 14 6 8.5127 -2.1600 0.0074 15 6 7.7864 -0.9772 0.0054 16 8 8.4295 0.2167 0.0055 17 6 9.7722 0.1887 0.1247 18 1 10.2940 -0.7568 0.1323 19 6 10.4831 1.3740 0.2377 20 7 9.8475 2.5257 0.2281 21 14 12.3433 1.3352 0.4036 22 1 12.9329 0.6755 -0.7890 23 1 12.8601 2.7235 0.5069 24 1 12.7156 0.5757 1.6242 25 7 4.2790 0.1685 0.0021 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 3.6222 3.4345 -0.0012 30 1 6.1092 3.4790 -0.0097 31 1 4.6571 -2.2957 0.0152 32 1 5.9663 -4.3759 0.0072 33 1 8.4247 -4.2928 0.0087 34 1 9.5922 -2.1303 0.0078 35 1 10.3447 3.3546 0.3075 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243580310.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:31:23 Heat of formation + Delta-G solvation = -16.514101 kcal Electronic energy + Delta-G solvation = -23264.871568 eV Core-core repulsion = 19616.137313 eV Total energy + Delta-G solvation = -3648.734255 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 300.094 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.94395 -39.95208 -38.83541 -36.57717 -36.37569 -33.46535 -32.66713 -32.29437 -29.59230 -28.81845 -28.13893 -25.56553 -25.08125 -24.10444 -21.94459 -21.42670 -20.57626 -18.38778 -17.98723 -17.54351 -16.73355 -16.52167 -16.48894 -15.28923 -15.14241 -14.63486 -14.54286 -14.31205 -14.03834 -13.61920 -13.53904 -13.36544 -13.19650 -12.88860 -12.49329 -12.22513 -11.74314 -11.42149 -11.04142 -10.92277 -10.89857 -10.86447 -10.79098 -10.50851 -10.41148 -10.37378 -9.67970 -9.42593 -8.89785 -8.67760 -7.99309 -7.21438 -6.52160 -4.06108 0.64770 1.10277 2.22061 2.38234 2.48244 2.63257 3.09327 3.10844 3.12307 3.89649 4.05357 4.16960 4.55225 4.68400 4.82804 4.96867 5.04586 5.05118 5.08680 5.20784 5.36189 5.39718 5.58781 5.75587 5.76534 5.91375 6.09334 6.17858 6.29441 6.57657 6.73130 6.75929 6.99487 7.11113 7.28318 7.29164 7.34457 7.66505 7.75630 7.89278 8.59636 8.90539 9.63048 10.61976 Molecular weight = 300.09amu Principal moments of inertia in cm(-1) A = 0.017703 B = 0.004509 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.239187 B = 6208.596032 C = 7769.005831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.332 6.332 3 C 0.530 3.470 4 O -0.499 6.499 5 C 0.135 3.865 6 C -0.201 4.201 7 C 0.164 3.836 8 N -0.438 5.438 9 C 0.378 3.622 10 C -0.148 4.148 11 C -0.017 4.017 12 C -0.231 4.231 13 C -0.050 4.050 14 C -0.241 4.241 15 C 0.182 3.818 16 O -0.117 6.117 17 C -0.397 4.397 18 H 0.092 0.908 19 C 0.047 3.953 20 N -0.834 5.834 21 Si 0.938 3.062 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 N -0.486 5.486 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.152 0.848 30 H 0.176 0.824 31 H 0.127 0.873 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.131 0.869 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.454 -3.796 -0.252 11.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.246 6.246 3 C 0.373 3.627 4 O -0.385 6.385 5 C -0.012 4.012 6 C -0.224 4.224 7 C -0.006 4.006 8 N -0.152 5.152 9 C 0.118 3.882 10 C -0.152 4.152 11 C -0.037 4.037 12 C -0.250 4.250 13 C -0.069 4.069 14 C -0.260 4.260 15 C 0.121 3.879 16 O -0.014 6.014 17 C -0.473 4.473 18 H 0.110 0.890 19 C -0.161 4.161 20 N -0.466 5.466 21 Si 0.763 3.237 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.194 1.194 25 N -0.204 5.204 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.122 0.878 29 H 0.170 0.830 30 H 0.193 0.807 31 H 0.145 0.855 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.149 0.851 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.212 -3.790 -0.250 10.896 hybrid contribution 0.257 0.828 0.087 0.872 sum -9.955 -2.962 -0.164 10.388 Atomic orbital electron populations 1.23346 0.76253 1.03954 1.02502 1.86704 1.23041 1.31690 1.83183 1.20908 0.87787 0.81675 0.72363 1.90818 1.65838 1.36227 1.45641 1.20115 0.90613 0.90538 0.99957 1.22812 0.97286 0.98588 1.03760 1.23494 0.89730 0.97981 0.89421 1.68888 1.39729 0.97681 1.08857 1.21392 0.84868 0.92235 0.89729 1.17039 0.89055 0.89240 1.19866 1.20837 0.99435 0.90324 0.93111 1.20534 0.93840 0.97171 1.13464 1.20920 0.94328 0.96688 0.94974 1.21106 1.00665 0.91766 1.12487 1.19270 0.90422 0.86753 0.91407 1.84224 1.20779 1.23040 1.73366 1.21483 0.79208 0.94783 1.51826 0.89040 1.25288 1.00375 0.94185 0.96216 1.70075 1.36264 0.97400 1.42850 0.85826 0.80642 0.77988 0.79282 1.19451 1.20235 1.19445 1.68297 1.08032 1.30596 1.13494 0.91811 0.91804 0.87789 0.83043 0.80659 0.85493 0.87114 0.87201 0.85107 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.39 16 2 O -0.33 -4.75 10.42 -40.31 -0.42 -5.17 16 3 C 0.53 8.44 7.97 34.92 0.28 8.72 16 4 O -0.50 -8.15 16.21 -19.18 -0.31 -8.46 16 5 C 0.14 2.38 6.79 -82.68 -0.56 1.82 16 6 C -0.20 -3.25 9.72 -38.83 -0.38 -3.62 16 7 C 0.16 2.98 11.30 -17.23 -0.19 2.79 16 8 N -0.44 -9.88 8.14 -11.17 -0.09 -9.97 16 9 C 0.38 8.25 7.55 -157.00 -1.19 7.07 16 10 C -0.15 -3.26 5.89 -104.74 -0.62 -3.88 16 11 C -0.02 -0.33 9.56 -39.26 -0.38 -0.70 16 12 C -0.23 -3.96 10.03 -39.59 -0.40 -4.36 16 13 C -0.05 -0.88 10.03 -39.55 -0.40 -1.28 16 14 C -0.24 -5.04 9.16 -39.43 -0.36 -5.40 16 15 C 0.18 4.32 6.65 -38.71 -0.26 4.06 16 16 O -0.12 -3.15 7.55 0.50 0.00 -3.14 16 17 C -0.40 -10.48 9.49 30.89 0.29 -10.18 16 18 H 0.09 2.23 5.21 -52.49 -0.27 1.95 16 19 C 0.05 1.21 5.49 -17.51 -0.10 1.11 16 20 N -0.83 -22.63 13.67 55.48 0.76 -21.87 16 21 Si 0.94 19.43 29.55 -169.99 -5.02 14.41 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 23 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 25 N -0.49 -9.53 9.26 -7.76 -0.07 -9.60 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.15 2.02 7.73 -52.49 -0.41 1.62 16 30 H 0.18 2.77 8.06 -52.49 -0.42 2.35 16 31 H 0.13 2.21 7.51 -52.49 -0.39 1.82 16 32 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 33 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.13 2.67 5.64 -52.49 -0.30 2.38 16 35 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 319.29 15.07 4.81 4.81 Total: -1.00 -30.84 319.29 -6.56 -37.41 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -3.04 Total: 4.07 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -3.18 Total: -2.48 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.60 Total: -41.45 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.73 Total: -16.77 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.84 -6.56 -37.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580310.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.893 kcal (2) G-P(sol) polarization free energy of solvation -30.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds