Wall clock time and date at job start Tue Mar 31 2020 08:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46956 * 2 1 4 4 O 1.42904 * 109.46982 * 240.00372 * 2 1 3 5 5 C 1.50695 * 109.47399 * 120.00084 * 2 1 3 6 6 C 1.38420 * 119.92581 * 330.22940 * 5 2 1 7 7 C 1.38365 * 120.29778 * 180.27437 * 6 5 2 8 8 C 1.37949 * 120.15135 * 359.49662 * 7 6 5 9 9 C 1.39616 * 119.84465 * 0.24959 * 8 7 6 10 10 C 1.47893 * 120.14367 * 180.02562 * 9 8 7 11 11 C 1.39044 * 120.31853 * 129.72276 * 10 9 8 12 12 C 1.38404 * 119.95588 * 179.76786 * 11 10 9 13 13 F 1.35104 * 119.69567 * 180.25307 * 12 11 10 14 14 C 1.39213 * 120.61061 * 0.50788 * 12 11 10 15 15 C 1.36350 * 120.64998 * 359.74698 * 14 12 11 16 16 C 1.40792 * 120.01725 * 359.97438 * 15 14 12 17 17 C 1.40826 * 120.29924 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99760 * 153.00867 * 17 16 15 19 19 C 1.40044 * 119.99888 * 333.00075 * 17 16 15 20 20 N 1.30793 * 120.00259 * 344.36643 * 19 17 16 21 21 Si 1.86805 * 119.99752 * 164.36369 * 19 17 16 22 22 H 1.48496 * 109.47036 * 90.00328 * 21 19 17 23 23 H 1.48507 * 109.46951 * 210.00444 * 21 19 17 24 24 H 1.48502 * 109.46919 * 329.99957 * 21 19 17 25 25 C 1.37906 * 119.92528 * 150.00062 * 5 2 1 26 26 H 1.09000 * 109.47284 * 300.00033 * 1 2 3 27 27 H 1.08997 * 109.47525 * 59.99826 * 1 2 3 28 28 H 1.08994 * 109.47377 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46538 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46987 * 299.99937 * 3 2 1 31 31 H 1.08999 * 109.46966 * 60.00404 * 3 2 1 32 32 H 0.96697 * 113.99583 * 299.99864 * 4 2 1 33 33 H 1.08007 * 119.84757 * 0.04927 * 6 5 2 34 34 H 1.08001 * 119.92250 * 179.76742 * 7 6 5 35 35 H 1.07999 * 120.07902 * 180.27135 * 8 7 6 36 36 H 1.07993 * 120.02599 * 359.97438 * 11 10 9 37 37 H 1.07997 * 119.67332 * 179.71991 * 14 12 11 38 38 H 1.08003 * 119.99242 * 179.97438 * 15 14 12 39 39 H 0.97008 * 120.00256 * 179.97438 * 20 19 17 40 40 H 1.07993 * 120.08004 * 359.95716 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0323 -0.7104 1.2304 6 6 1.2808 -0.6936 2.3927 7 6 1.7374 -1.3386 3.5285 8 6 2.9412 -2.0118 3.5064 9 6 3.7018 -2.0371 2.3358 10 6 4.9931 -2.7574 2.3046 11 6 5.2647 -3.6676 1.2891 12 6 6.4775 -4.3339 1.2645 13 9 6.7380 -5.2134 0.2725 14 6 7.4295 -4.1102 2.2553 15 6 7.1871 -3.2270 3.2654 16 6 5.9647 -2.5302 3.3135 17 6 5.7079 -1.6171 4.3544 18 1 5.0291 -0.7925 4.1941 19 6 6.3326 -1.7784 5.5974 20 7 6.9020 -2.9162 5.9004 21 14 6.3525 -0.3684 6.8226 22 1 5.1528 -0.4525 7.6936 23 1 7.5776 -0.4555 7.6576 24 1 6.3434 0.9236 6.0906 25 6 3.2376 -1.3797 1.1945 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.7209 -1.5951 -1.2330 33 1 0.3355 -0.1717 2.4141 34 1 1.1479 -1.3184 4.4332 35 1 3.2944 -2.5185 4.3924 36 1 4.5312 -3.8520 0.5183 37 1 8.3690 -4.6418 2.2238 38 1 7.9330 -3.0620 4.0289 39 1 7.3351 -3.0278 6.7612 40 1 3.8209 -1.3957 0.2858 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240407352.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:09 Heat of formation + Delta-G solvation = -70.162500 kcal Electronic energy + Delta-G solvation = -23883.839836 eV Core-core repulsion = 20348.692345 eV Total energy + Delta-G solvation = -3535.147491 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.127 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -47.52033 -39.55550 -37.84278 -36.47592 -33.78387 -32.78764 -31.31637 -29.93992 -29.29469 -28.14840 -27.22732 -25.20806 -22.85967 -22.43706 -20.98289 -20.67048 -19.31688 -17.59963 -17.17640 -15.98315 -15.78842 -15.46077 -14.94118 -14.67000 -14.50766 -14.28549 -14.17622 -13.92856 -13.51207 -12.96351 -12.72095 -12.47232 -12.39301 -12.24145 -12.15335 -12.04883 -11.67116 -11.58148 -11.40003 -11.29256 -11.10273 -10.98697 -10.82788 -10.48707 -10.32446 -10.07077 -9.91421 -9.50459 -9.32067 -8.40369 -8.20608 -7.51980 -7.34366 -6.95990 -4.51559 1.77654 1.97118 2.55483 2.80525 2.97002 2.99099 3.05669 3.78157 4.28657 4.33115 4.42806 4.82308 4.98502 5.14623 5.37565 5.43468 5.55672 5.59912 5.67498 5.75849 5.85366 5.90383 5.94588 6.01718 6.02528 6.16435 6.21570 6.26259 6.29263 6.59250 6.68526 6.81495 6.87357 7.01149 7.03438 7.08319 7.31825 7.34377 7.49702 7.69167 7.73910 7.76525 7.85404 8.03085 8.37240 8.62934 8.70476 9.95274 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.011662 B = 0.005832 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.414561 B = 4799.627525 C = 6605.082846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.172 3.828 3 C -0.133 4.133 4 O -0.557 6.557 5 C -0.127 4.127 6 C -0.136 4.136 7 C -0.129 4.129 8 C -0.093 4.093 9 C 0.017 3.983 10 C -0.167 4.167 11 C -0.094 4.094 12 C -0.046 4.046 13 F -0.173 7.173 14 C -0.124 4.124 15 C -0.136 4.136 16 C 0.123 3.877 17 C -0.442 4.442 18 H 0.086 0.914 19 C 0.075 3.925 20 N -0.785 5.785 21 Si 0.907 3.093 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.110 4.110 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.376 0.624 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.127 0.873 39 H 0.285 0.715 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.783 4.893 -3.648 10.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.131 3.869 3 C -0.190 4.190 4 O -0.363 6.363 5 C -0.127 4.127 6 C -0.154 4.154 7 C -0.147 4.147 8 C -0.111 4.111 9 C 0.017 3.983 10 C -0.169 4.169 11 C -0.113 4.113 12 C -0.066 4.066 13 F -0.153 7.153 14 C -0.143 4.143 15 C -0.155 4.155 16 C 0.120 3.880 17 C -0.471 4.471 18 H 0.104 0.896 19 C -0.144 4.144 20 N -0.409 5.409 21 Si 0.731 3.269 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.182 1.182 25 C -0.128 4.128 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.223 0.777 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.147 0.853 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.145 0.855 39 H 0.096 0.904 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.371 5.328 -3.584 10.550 hybrid contribution -0.111 -0.243 0.738 0.784 sum -8.482 5.085 -2.846 10.291 Atomic orbital electron populations 1.22520 0.95762 1.02490 1.02416 1.19917 0.91960 0.92341 0.82648 1.21728 1.02451 0.93000 1.01852 1.86521 1.77456 1.28977 1.43337 1.20202 0.96149 1.00783 0.95613 1.20875 0.99612 1.01934 0.93027 1.20987 0.96826 0.99208 0.97664 1.21468 0.93075 0.98075 0.98438 1.18728 0.92822 0.94383 0.92354 1.18363 0.93909 1.03808 1.00790 1.20516 0.94882 0.97651 0.98282 1.17186 0.97822 0.99918 0.91689 1.91290 1.94788 1.68326 1.60887 1.20500 0.97827 1.00666 0.95339 1.20933 0.97806 0.98983 0.97784 1.17571 0.89542 0.90474 0.90393 1.19589 1.22656 1.09934 0.94876 0.89580 1.25981 0.92835 0.96087 0.99496 1.69776 1.25650 1.23043 1.22436 0.86305 0.78794 0.81986 0.79830 1.19207 1.19911 1.18218 1.21114 0.95398 0.97790 0.98516 0.91321 0.92030 0.92214 0.91604 0.92148 0.91218 0.77659 0.87000 0.86900 0.85277 0.87948 0.88125 0.85514 0.90400 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 8.11 37.16 0.30 -1.53 16 2 C 0.17 2.25 1.23 -91.77 -0.11 2.14 16 3 C -0.13 -1.67 8.83 37.16 0.33 -1.34 16 4 O -0.56 -7.61 11.96 -35.23 -0.42 -8.03 16 5 C -0.13 -1.98 4.81 -104.68 -0.50 -2.48 16 6 C -0.14 -2.04 9.14 -39.47 -0.36 -2.40 16 7 C -0.13 -2.11 10.03 -39.64 -0.40 -2.50 16 8 C -0.09 -1.80 8.01 -39.17 -0.31 -2.11 16 9 C 0.02 0.35 4.92 -104.90 -0.52 -0.16 16 10 C -0.17 -3.85 5.52 -104.24 -0.58 -4.43 16 11 C -0.09 -2.13 9.49 -39.22 -0.37 -2.50 16 12 C -0.05 -1.08 7.31 -39.16 -0.29 -1.37 16 13 F -0.17 -3.91 17.26 2.25 0.04 -3.87 16 14 C -0.12 -2.88 9.94 -39.90 -0.40 -3.27 16 15 C -0.14 -3.32 8.61 -39.30 -0.34 -3.66 16 16 C 0.12 3.04 5.55 -106.55 -0.59 2.44 16 17 C -0.44 -10.66 7.10 -37.93 -0.27 -10.93 16 18 H 0.09 2.06 6.65 -52.49 -0.35 1.71 16 19 C 0.08 1.73 5.16 -17.32 -0.09 1.64 16 20 N -0.78 -18.61 10.99 55.55 0.61 -18.00 16 21 Si 0.91 17.45 29.59 -169.99 -5.03 12.42 16 22 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 23 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 24 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 25 C -0.11 -2.01 8.83 -39.17 -0.35 -2.36 16 26 H 0.07 0.66 6.50 -51.93 -0.34 0.32 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.38 4.11 9.04 45.56 0.41 4.52 16 33 H 0.11 1.37 6.14 -52.48 -0.32 1.05 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 35 H 0.13 2.68 7.31 -52.49 -0.38 2.29 16 36 H 0.10 2.11 8.05 -52.49 -0.42 1.68 16 37 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 38 H 0.13 3.14 6.26 -52.48 -0.33 2.81 16 39 H 0.28 6.16 8.30 -40.82 -0.34 5.82 16 40 H 0.12 2.24 7.47 -52.49 -0.39 1.85 16 LS Contribution 336.23 15.07 5.07 5.07 Total: -1.00 -26.14 336.23 -8.79 -34.93 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -4.22 Total: 12.30 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: -4.84 Total: -34.82 kcal Atomic # 7 Polarization: -18.61 SS G_CDS: 0.61 Total: -18.00 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.42 Total: -8.03 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.04 Total: -3.87 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.42 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -26.14 -8.79 -34.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240407352.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.231 kcal (2) G-P(sol) polarization free energy of solvation -26.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds