Wall clock time and date at job start Tue Mar 31 2020 08:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46956 * 2 1 4 4 O 1.42904 * 109.46982 * 240.00372 * 2 1 3 5 5 C 1.50695 * 109.47399 * 120.00084 * 2 1 3 6 6 C 1.38420 * 119.92581 * 330.22940 * 5 2 1 7 7 C 1.38365 * 120.29778 * 180.27437 * 6 5 2 8 8 C 1.37949 * 120.15135 * 359.49662 * 7 6 5 9 9 C 1.39616 * 119.84465 * 0.24959 * 8 7 6 10 10 C 1.47893 * 120.14367 * 180.02562 * 9 8 7 11 11 C 1.39044 * 120.31853 * 129.72276 * 10 9 8 12 12 C 1.38404 * 119.95588 * 179.76786 * 11 10 9 13 13 F 1.35104 * 119.69567 * 180.25307 * 12 11 10 14 14 C 1.39213 * 120.61061 * 0.50788 * 12 11 10 15 15 C 1.36350 * 120.64998 * 359.74698 * 14 12 11 16 16 C 1.40792 * 120.01725 * 359.97438 * 15 14 12 17 17 C 1.40826 * 120.29924 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99760 * 153.00867 * 17 16 15 19 19 C 1.40044 * 119.99888 * 333.00075 * 17 16 15 20 20 N 1.30793 * 120.00259 * 344.36643 * 19 17 16 21 21 Si 1.86805 * 119.99752 * 164.36369 * 19 17 16 22 22 H 1.48496 * 109.47036 * 90.00328 * 21 19 17 23 23 H 1.48507 * 109.46951 * 210.00444 * 21 19 17 24 24 H 1.48502 * 109.46919 * 329.99957 * 21 19 17 25 25 C 1.37906 * 119.92528 * 150.00062 * 5 2 1 26 26 H 1.09000 * 109.47284 * 300.00033 * 1 2 3 27 27 H 1.08997 * 109.47525 * 59.99826 * 1 2 3 28 28 H 1.08994 * 109.47377 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46538 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46987 * 299.99937 * 3 2 1 31 31 H 1.08999 * 109.46966 * 60.00404 * 3 2 1 32 32 H 0.96697 * 113.99583 * 299.99864 * 4 2 1 33 33 H 1.08007 * 119.84757 * 0.04927 * 6 5 2 34 34 H 1.08001 * 119.92250 * 179.76742 * 7 6 5 35 35 H 1.07999 * 120.07902 * 180.27135 * 8 7 6 36 36 H 1.07993 * 120.02599 * 359.97438 * 11 10 9 37 37 H 1.07997 * 119.67332 * 179.71991 * 14 12 11 38 38 H 1.08003 * 119.99242 * 179.97438 * 15 14 12 39 39 H 0.97008 * 120.00256 * 179.97438 * 20 19 17 40 40 H 1.07993 * 120.08004 * 359.95716 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0323 -0.7104 1.2304 6 6 1.2808 -0.6936 2.3927 7 6 1.7374 -1.3386 3.5285 8 6 2.9412 -2.0118 3.5064 9 6 3.7018 -2.0371 2.3358 10 6 4.9931 -2.7574 2.3046 11 6 5.2647 -3.6676 1.2891 12 6 6.4775 -4.3339 1.2645 13 9 6.7380 -5.2134 0.2725 14 6 7.4295 -4.1102 2.2553 15 6 7.1871 -3.2270 3.2654 16 6 5.9647 -2.5302 3.3135 17 6 5.7079 -1.6171 4.3544 18 1 5.0291 -0.7925 4.1941 19 6 6.3326 -1.7784 5.5974 20 7 6.9020 -2.9162 5.9004 21 14 6.3525 -0.3684 6.8226 22 1 5.1528 -0.4525 7.6936 23 1 7.5776 -0.4555 7.6576 24 1 6.3434 0.9236 6.0906 25 6 3.2376 -1.3797 1.1945 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.7209 -1.5951 -1.2330 33 1 0.3355 -0.1717 2.4141 34 1 1.1479 -1.3184 4.4332 35 1 3.2944 -2.5185 4.3924 36 1 4.5312 -3.8520 0.5183 37 1 8.3690 -4.6418 2.2238 38 1 7.9330 -3.0620 4.0289 39 1 7.3351 -3.0278 6.7612 40 1 3.8209 -1.3957 0.2858 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240407352.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:08 Heat of formation + Delta-G solvation = -82.312845 kcal Electronic energy + Delta-G solvation = -23884.366714 eV Core-core repulsion = 20348.692345 eV Total energy + Delta-G solvation = -3535.674369 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.127 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.35020 -40.85682 -39.40391 -37.80632 -35.56650 -34.00887 -32.74762 -31.55517 -30.82591 -29.62292 -28.17835 -26.99407 -24.25561 -23.90301 -22.70739 -22.10210 -20.65226 -19.35246 -18.57366 -17.44308 -17.29520 -17.03552 -16.52638 -16.13396 -15.96410 -15.86180 -15.63212 -15.21298 -14.91897 -14.49583 -14.22714 -14.05763 -13.81035 -13.60430 -13.27277 -13.17678 -13.05200 -12.93357 -12.81524 -12.63520 -12.55272 -12.41981 -12.25205 -12.11757 -11.77396 -11.51666 -11.37515 -11.07253 -10.86968 -9.97210 -9.58552 -9.30565 -9.04489 -8.69880 -6.35207 0.28554 0.60202 0.77175 1.09832 1.38287 1.44813 1.52196 2.16936 2.59191 2.97125 3.35115 3.55999 3.72940 3.84480 4.02026 4.17949 4.22033 4.23867 4.27740 4.38579 4.54906 4.67090 4.73836 4.79233 4.89730 4.93043 4.99985 5.02831 5.09918 5.19872 5.21702 5.27911 5.30421 5.36226 5.46455 5.62985 5.70244 5.79106 5.82962 5.91174 6.08595 6.22000 6.26517 6.54276 6.81211 6.84400 6.87931 8.23269 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.011662 B = 0.005832 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.414561 B = 4799.627525 C = 6605.082846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.170 3.830 3 C -0.136 4.136 4 O -0.572 6.572 5 C -0.119 4.119 6 C -0.122 4.122 7 C -0.125 4.125 8 C -0.110 4.110 9 C -0.013 4.013 10 C -0.169 4.169 11 C -0.100 4.100 12 C -0.061 4.061 13 F -0.170 7.170 14 C -0.128 4.128 15 C -0.156 4.156 16 C 0.096 3.904 17 C -0.458 4.458 18 H 0.081 0.919 19 C 0.041 3.959 20 N -0.813 5.813 21 Si 0.973 3.027 22 H -0.259 1.259 23 H -0.266 1.266 24 H -0.261 1.261 25 C -0.117 4.117 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.386 0.614 33 H 0.152 0.848 34 H 0.141 0.859 35 H 0.105 0.895 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.293 0.707 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.348 6.650 -3.509 13.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.129 3.871 3 C -0.193 4.193 4 O -0.380 6.380 5 C -0.119 4.119 6 C -0.139 4.139 7 C -0.142 4.142 8 C -0.129 4.129 9 C -0.013 4.013 10 C -0.170 4.170 11 C -0.119 4.119 12 C -0.081 4.081 13 F -0.150 7.150 14 C -0.147 4.147 15 C -0.176 4.176 16 C 0.093 3.907 17 C -0.486 4.486 18 H 0.099 0.901 19 C -0.176 4.176 20 N -0.437 5.437 21 Si 0.794 3.206 22 H -0.183 1.183 23 H -0.190 1.190 24 H -0.185 1.185 25 C -0.135 4.135 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.235 0.765 33 H 0.170 0.830 34 H 0.159 0.841 35 H 0.123 0.877 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.104 0.896 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.940 7.064 -3.459 13.474 hybrid contribution 0.597 -0.790 0.621 1.169 sum -10.342 6.274 -2.838 12.425 Atomic orbital electron populations 1.22473 0.93039 1.03283 1.03800 1.20077 0.93891 0.91987 0.81126 1.21783 1.01046 0.93076 1.03378 1.86505 1.78025 1.29940 1.43488 1.20549 0.94798 0.99388 0.97210 1.21303 1.00508 1.00393 0.91731 1.21290 0.95583 0.97939 0.99419 1.21346 0.94744 0.99556 0.97210 1.18717 0.92451 0.96212 0.93906 1.18736 0.94858 1.03431 0.99994 1.20735 0.95092 0.97403 0.98690 1.17332 0.98293 1.00423 0.92002 1.91286 1.94808 1.68192 1.60671 1.20658 0.98610 1.00483 0.94991 1.20905 0.97960 1.00340 0.98362 1.17932 0.90089 0.91163 0.91498 1.19664 1.23407 1.09918 0.95571 0.90057 1.26723 0.92013 0.98156 1.00733 1.69816 1.26027 1.24553 1.23338 0.85310 0.79246 0.78515 0.77512 1.18320 1.19017 1.18465 1.21055 0.96620 0.98553 0.97302 0.89794 0.90845 0.91732 0.93907 0.90637 0.89748 0.76496 0.83016 0.84111 0.87697 0.86354 0.86422 0.86460 0.89620 0.87169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 8.11 71.98 0.58 -2.22 16 2 C 0.17 3.96 1.23 -11.54 -0.01 3.94 16 3 C -0.14 -3.06 8.83 71.98 0.64 -2.42 16 4 O -0.57 -14.60 11.96 -148.98 -1.78 -16.38 16 5 C -0.12 -3.44 4.81 -19.90 -0.10 -3.53 16 6 C -0.12 -3.19 9.14 22.34 0.20 -2.98 16 7 C -0.12 -3.78 10.03 22.23 0.22 -3.56 16 8 C -0.11 -4.31 8.01 22.53 0.18 -4.13 16 9 C -0.01 -0.54 4.92 -20.04 -0.10 -0.64 16 10 C -0.17 -8.08 5.52 -19.62 -0.11 -8.19 16 11 C -0.10 -4.66 9.49 22.50 0.21 -4.44 16 12 C -0.06 -2.90 7.31 22.54 0.16 -2.74 16 13 F -0.17 -7.73 17.26 44.97 0.78 -6.96 16 14 C -0.13 -6.15 9.94 22.06 0.22 -5.94 16 15 C -0.16 -7.99 8.61 22.45 0.19 -7.80 16 16 C 0.10 4.95 5.55 -21.11 -0.12 4.83 16 17 C -0.46 -22.81 7.10 23.34 0.17 -22.64 16 18 H 0.08 4.02 6.65 -2.91 -0.02 4.00 16 19 C 0.04 1.91 5.16 85.29 0.44 2.35 16 20 N -0.81 -39.51 10.99 21.84 0.24 -39.27 16 21 Si 0.97 35.75 29.59 68.60 2.03 37.78 16 22 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 23 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 24 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 25 C -0.12 -4.27 8.83 22.53 0.20 -4.07 16 26 H 0.08 1.15 6.50 -2.39 -0.02 1.13 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.39 7.81 9.04 -74.06 -0.67 7.14 16 33 H 0.15 2.82 6.14 -2.91 -0.02 2.80 16 34 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 35 H 0.10 4.54 7.31 -2.91 -0.02 4.51 16 36 H 0.12 4.96 8.05 -2.91 -0.02 4.94 16 37 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 38 H 0.12 6.10 6.26 -2.91 -0.02 6.08 16 39 H 0.29 12.84 8.30 -92.70 -0.77 12.08 16 40 H 0.11 4.17 7.47 -2.91 -0.02 4.15 16 Total: -1.00 -58.01 336.23 4.65 -53.35 By element: Atomic # 1 Polarization: 35.25 SS G_CDS: 0.40 Total: 35.65 kcal Atomic # 6 Polarization: -67.17 SS G_CDS: 2.99 Total: -64.18 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.24 Total: -39.27 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -1.78 Total: -16.38 kcal Atomic # 9 Polarization: -7.73 SS G_CDS: 0.78 Total: -6.96 kcal Atomic # 14 Polarization: 35.75 SS G_CDS: 2.03 Total: 37.78 kcal Total: -58.01 4.65 -53.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240407352.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.959 kcal (2) G-P(sol) polarization free energy of solvation -58.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds