Wall clock time and date at job start Tue Mar 31 2020 07:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.34304 * 125.79222 * 2 1 4 4 C 1.34304 * 109.47794 * 179.78914 * 3 2 1 5 5 C 1.34519 * 108.42154 * 0.37696 * 4 3 2 6 6 C 1.34521 * 125.78709 * 180.02562 * 2 1 3 7 7 C 1.50692 * 126.58092 * 0.02562 * 6 2 1 8 8 N 1.46503 * 109.46807 * 79.98367 * 7 6 2 9 9 C 1.34780 * 119.99900 * 179.97438 * 8 7 6 10 10 O 1.21588 * 120.00202 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00174 * 179.97438 * 9 8 7 12 12 C 1.39953 * 120.00182 * 174.85016 * 11 9 8 13 13 C 1.39286 * 119.94889 * 145.76765 * 12 11 9 14 14 C 1.38491 * 120.43063 * 180.02562 * 13 12 11 15 15 C 1.37680 * 120.31932 * 359.97438 * 14 13 12 16 16 C 1.40734 * 119.88837 * 0.02562 * 15 14 13 17 17 C 1.41405 * 120.21484 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00251 * 205.17700 * 17 16 15 19 19 C 1.39927 * 120.00040 * 25.16591 * 17 16 15 20 20 N 1.30838 * 120.00000 * 16.80160 * 19 17 16 21 21 Si 1.86800 * 120.00213 * 196.80060 * 19 17 16 22 22 H 1.48492 * 109.47106 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47123 * 120.00463 * 21 19 17 24 24 H 1.48500 * 109.46996 * 239.99940 * 21 19 17 25 25 C 1.38241 * 119.94674 * 325.49842 * 12 11 9 26 26 H 1.08992 * 109.47537 * 269.97744 * 1 2 3 27 27 H 1.09004 * 109.46762 * 29.97873 * 1 2 3 28 28 H 1.09004 * 109.47531 * 149.97704 * 1 2 3 29 29 H 1.08002 * 125.79014 * 180.23962 * 4 3 2 30 30 H 1.07993 * 126.57995 * 179.89737 * 5 4 3 31 31 H 1.08995 * 109.47441 * 199.98577 * 7 6 2 32 32 H 1.09004 * 109.47177 * 319.98605 * 7 6 2 33 33 H 0.97001 * 120.00280 * 0.02562 * 8 7 6 34 34 H 0.97005 * 119.99666 * 354.85857 * 11 9 8 35 35 H 1.08006 * 119.78305 * 0.02562 * 13 12 11 36 36 H 1.07996 * 119.83471 * 180.02562 * 14 13 12 37 37 H 1.07997 * 120.05088 * 179.97438 * 15 14 13 38 38 H 0.96991 * 120.00061 * 180.02562 * 20 19 17 39 39 H 1.08002 * 120.15665 * 0.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2924 1.0894 0.0000 4 6 3.5814 0.7121 0.0047 5 6 3.6308 -0.6321 -0.0007 6 6 2.2936 -1.0912 -0.0005 7 6 1.8371 -2.5274 -0.0017 8 7 1.4608 -2.9190 -1.3623 9 6 1.0191 -4.1688 -1.6060 10 8 0.9326 -4.9712 -0.6966 11 7 0.6724 -4.5290 -2.8576 12 6 0.3171 -5.8547 -3.1313 13 6 -0.6583 -6.1301 -4.0867 14 6 -1.0180 -7.4382 -4.3650 15 6 -0.4143 -8.4816 -3.6998 16 6 0.5729 -8.2187 -2.7319 17 6 1.1971 -9.2850 -2.0442 18 1 1.6243 -9.1203 -1.0661 19 6 1.2611 -10.5537 -2.6309 20 7 1.0530 -10.6918 -3.9152 21 14 1.6435 -12.0503 -1.5805 22 1 1.8358 -11.6288 -0.1697 23 1 0.5148 -13.0122 -1.6599 24 1 2.8831 -12.6999 -2.0770 25 6 0.9387 -6.8890 -2.4568 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5142 29 1 4.4336 1.3755 0.0094 30 1 4.5211 -1.2434 -0.0005 31 1 2.6473 -3.1664 0.3494 32 1 0.9767 -2.6357 0.6587 33 1 1.5301 -2.2790 -2.0879 34 1 0.6693 -3.8693 -3.5688 35 1 -1.1372 -5.3182 -4.6139 36 1 -1.7752 -7.6408 -5.1079 37 1 -0.6984 -9.5000 -3.9200 38 1 1.0970 -11.5713 -4.3218 39 1 1.6979 -6.6766 -1.7187 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466577708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:03 Heat of formation + Delta-G solvation = -15.854611 kcal Electronic energy + Delta-G solvation = -22881.162281 eV Core-core repulsion = 19368.289718 eV Total energy + Delta-G solvation = -3512.872563 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.60849 -41.39690 -39.17330 -36.72595 -36.06570 -34.85786 -33.74438 -32.76816 -31.72530 -30.09143 -28.31864 -27.23056 -26.31321 -23.38002 -22.70255 -22.45169 -21.65353 -20.84143 -19.59786 -19.29549 -17.94455 -17.43406 -17.23724 -16.94309 -16.58605 -16.37611 -15.90738 -15.63866 -15.10128 -15.02973 -14.68053 -14.59031 -13.99042 -13.81488 -13.67474 -13.60032 -13.48019 -13.17891 -12.99869 -12.89387 -12.77718 -12.56400 -12.16325 -11.99652 -11.55523 -11.29121 -11.02765 -10.83660 -10.70964 -10.15608 -9.37012 -9.34969 -8.70937 -8.56782 -6.35020 0.67263 0.94584 1.04930 1.35556 1.36907 1.49287 1.52738 1.96206 2.09588 2.19012 2.22769 2.76088 3.36912 3.72475 3.76751 3.82902 3.90824 4.40254 4.49218 4.52770 4.61863 4.65041 4.66643 4.83981 4.86912 5.06455 5.06941 5.12298 5.14699 5.21420 5.30972 5.34280 5.39268 5.51965 5.74131 5.85078 6.07803 6.13469 6.15131 6.20583 6.38972 6.71139 6.96463 7.03238 7.10036 7.59808 8.35135 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.024417 B = 0.002865 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.443941 B = 9770.124410 C =10514.080295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.010 3.990 3 O -0.183 6.183 4 C -0.036 4.036 5 C -0.215 4.215 6 C -0.214 4.214 7 C 0.217 3.783 8 N -0.721 5.721 9 C 0.696 3.304 10 O -0.618 6.618 11 N -0.669 5.669 12 C 0.177 3.823 13 C -0.251 4.251 14 C -0.090 4.090 15 C -0.200 4.200 16 C 0.090 3.910 17 C -0.503 4.503 18 H 0.061 0.939 19 C 0.038 3.962 20 N -0.822 5.822 21 Si 0.981 3.019 22 H -0.266 1.266 23 H -0.258 1.258 24 H -0.262 1.262 25 C -0.237 4.237 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.240 0.760 30 H 0.156 0.844 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.410 0.590 34 H 0.417 0.583 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.289 0.711 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.675 21.533 3.080 21.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.042 4.042 3 O -0.079 6.079 4 C -0.102 4.102 5 C -0.234 4.234 6 C -0.216 4.216 7 C 0.093 3.907 8 N -0.378 5.378 9 C 0.397 3.603 10 O -0.497 6.497 11 N -0.318 5.318 12 C 0.083 3.917 13 C -0.272 4.272 14 C -0.108 4.108 15 C -0.220 4.220 16 C 0.087 3.913 17 C -0.533 4.533 18 H 0.079 0.921 19 C -0.177 4.177 20 N -0.448 5.448 21 Si 0.802 3.198 22 H -0.190 1.190 23 H -0.183 1.183 24 H -0.186 1.186 25 C -0.259 4.259 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.106 0.894 29 H 0.256 0.744 30 H 0.174 0.826 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.246 0.754 34 H 0.255 0.745 35 H 0.150 0.850 36 H 0.142 0.858 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.535 20.999 3.742 21.385 hybrid contribution 0.691 -0.536 -0.148 0.887 sum 2.226 20.463 3.594 20.895 Atomic orbital electron populations 1.20480 0.83459 1.04914 1.04720 1.22721 0.94931 0.83484 1.03015 1.84057 1.17683 1.34806 1.71396 1.24651 0.84395 0.96048 1.05155 1.21975 0.97524 0.95726 1.08210 1.20099 0.94194 0.94396 1.12937 1.19198 0.99402 0.89807 0.82290 1.44986 1.70282 1.10926 1.11638 1.16153 0.78363 0.82882 0.82941 1.90963 1.61182 1.52522 1.45049 1.42328 1.70616 1.09506 1.09341 1.17281 0.95093 0.81954 0.97341 1.20442 1.03517 0.96855 1.06378 1.20827 0.98931 0.92356 0.98728 1.21300 0.99891 0.98515 1.02284 1.17821 0.90309 0.91834 0.91327 1.19749 1.35043 0.94904 1.03565 0.92109 1.26686 0.92248 1.02790 0.95959 1.69864 1.36636 1.26601 1.11733 0.85188 0.79127 0.76643 0.78878 1.19034 1.18256 1.18611 1.20948 1.05227 0.92548 1.07178 0.88828 0.88769 0.89405 0.74425 0.82649 0.92316 0.91318 0.75376 0.74497 0.84952 0.85784 0.87777 0.90029 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.20 71.23 0.73 -0.29 16 2 C 0.01 0.18 7.32 24.83 0.18 0.36 16 3 O -0.18 -3.16 10.65 -2.51 -0.03 -3.18 16 4 C -0.04 -0.50 12.09 66.97 0.81 0.31 16 5 C -0.22 -3.78 10.87 22.19 0.24 -3.54 16 6 C -0.21 -4.31 5.53 -19.94 -0.11 -4.42 16 7 C 0.22 5.40 5.69 85.63 0.49 5.89 16 8 N -0.72 -18.60 5.55 -482.30 -2.68 -21.28 16 9 C 0.70 25.72 8.29 179.05 1.48 27.20 16 10 O -0.62 -29.90 14.10 -3.99 -0.06 -29.96 16 11 N -0.67 -23.65 5.34 -317.32 -1.70 -25.34 16 12 C 0.18 8.14 6.25 38.10 0.24 8.38 16 13 C -0.25 -10.61 9.97 22.58 0.23 -10.39 16 14 C -0.09 -4.13 10.02 22.20 0.22 -3.91 16 15 C -0.20 -10.94 8.69 22.75 0.20 -10.74 16 16 C 0.09 5.29 5.57 -21.31 -0.12 5.17 16 17 C -0.50 -29.86 9.05 23.46 0.21 -29.64 16 18 H 0.06 3.65 7.90 -2.91 -0.02 3.63 16 19 C 0.04 2.03 5.16 85.25 0.44 2.47 16 20 N -0.82 -44.50 10.94 21.82 0.24 -44.26 16 21 Si 0.98 40.80 29.59 68.60 2.03 42.83 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 24 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 25 C -0.24 -13.16 8.39 22.85 0.19 -12.97 16 26 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.09 1.21 7.87 -2.38 -0.02 1.19 16 29 H 0.24 1.23 8.06 -2.91 -0.02 1.21 16 30 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 1.78 8.13 -2.39 -0.02 1.76 16 33 H 0.41 7.89 8.48 -92.71 -0.79 7.11 16 34 H 0.42 10.61 8.84 -92.70 -0.82 9.79 16 35 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.12 4.83 8.06 -2.91 -0.02 4.80 16 37 H 0.10 5.89 6.17 -2.91 -0.02 5.87 16 38 H 0.29 13.95 8.30 -92.72 -0.77 13.18 16 39 H 0.08 4.84 6.48 -2.91 -0.02 4.82 16 Total: -1.00 -75.69 339.40 2.74 -72.95 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: -0.50 Total: 34.37 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: 5.43 Total: -26.12 kcal Atomic # 7 Polarization: -86.75 SS G_CDS: -4.14 Total: -90.89 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -0.08 Total: -33.14 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -75.69 2.74 -72.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466577708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.095 kcal (2) G-P(sol) polarization free energy of solvation -75.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds