Wall clock time and date at job start Tue Mar 31 2020 07:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31242 * 1 3 3 Si 1.86797 * 120.00342 * 2 1 4 4 H 1.48503 * 109.47207 * 245.00836 * 3 2 1 5 5 H 1.48495 * 109.47102 * 5.00967 * 3 2 1 6 6 H 1.48495 * 109.47159 * 125.00777 * 3 2 1 7 7 C 1.39239 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00258 * 141.14040 * 7 2 1 9 9 N 1.36565 * 119.99511 * 321.14147 * 7 2 1 10 10 C 1.34777 * 120.00228 * 291.55401 * 9 7 2 11 11 O 1.21671 * 119.99972 * 357.36652 * 10 9 7 12 12 C 1.47213 * 119.99851 * 177.36388 * 10 9 7 13 13 C 1.38098 * 120.68196 * 80.02922 * 12 10 9 14 14 C 1.40007 * 119.10860 * 179.97438 * 13 12 10 15 15 N 1.31199 * 120.47128 * 359.97438 * 14 13 12 16 16 C 1.33689 * 121.37057 * 0.02562 * 15 14 13 17 17 C 1.39093 * 132.47492 * 179.97438 * 16 15 14 18 18 C 1.38526 * 107.66628 * 180.02562 * 17 16 15 19 19 N 1.31501 * 109.03304 * 0.02562 * 18 17 16 20 20 N 1.37272 * 120.74019 * 0.02562 * 16 15 14 21 21 C 1.46503 * 119.99900 * 111.55837 * 9 7 2 22 22 C 1.54273 * 110.03257 * 53.36204 * 21 9 7 23 23 C 1.54956 * 104.16104 * 217.13563 * 22 21 9 24 24 C 1.54890 * 102.77756 * 37.88767 * 23 22 21 25 25 C 1.53875 * 110.03400 * 296.14613 * 21 9 7 26 26 H 0.97003 * 120.00164 * 5.01435 * 1 2 3 27 27 H 1.08001 * 120.44495 * 359.97438 * 13 12 10 28 28 H 1.07997 * 119.76336 * 179.97438 * 14 13 12 29 29 H 1.07999 * 126.16707 * 0.04592 * 17 16 15 30 30 H 1.07997 * 125.48183 * 180.02562 * 18 17 16 31 31 H 1.08997 * 110.01797 * 174.74599 * 21 9 7 32 32 H 1.09007 * 110.48557 * 335.78387 * 22 21 9 33 33 H 1.08997 * 110.48570 * 98.42501 * 22 21 9 34 34 H 1.08999 * 110.72429 * 279.57219 * 23 22 21 35 35 H 1.09002 * 110.92285 * 156.28957 * 23 22 21 36 36 H 1.08996 * 110.48624 * 203.40407 * 24 23 22 37 37 H 1.09008 * 110.59963 * 80.81649 * 24 23 22 38 38 H 1.08997 * 110.03075 * 238.56873 * 25 21 9 39 39 H 1.09000 * 110.03029 * 359.97438 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3124 0.0000 0.0000 3 14 2.2465 1.6177 0.0000 4 1 3.0063 1.7506 -1.2690 5 1 1.2862 2.7437 0.1223 6 1 3.1896 1.6447 1.1467 7 6 2.0086 -1.2059 -0.0005 8 1 2.9093 -1.3092 -0.5874 9 7 1.5523 -2.2579 0.7410 10 6 1.5867 -2.1989 2.0871 11 8 2.0683 -1.2286 2.6413 12 6 1.0417 -3.3083 2.8867 13 6 1.7795 -4.4573 3.0927 14 6 1.2292 -5.4918 3.8590 15 7 0.0290 -5.3715 4.3752 16 6 -0.7017 -4.2677 4.1878 17 6 -1.9725 -3.8986 4.6162 18 6 -2.2308 -2.6305 4.1223 19 7 -1.1928 -2.2218 3.4259 20 7 -0.2144 -3.2214 3.4446 21 6 1.0255 -3.4508 0.0734 22 6 2.0548 -3.9851 -0.9440 23 6 1.1918 -4.4807 -2.1317 24 6 0.0652 -3.4201 -2.2027 25 6 -0.2392 -3.0921 -0.7264 26 1 -0.4850 0.8368 -0.0734 27 1 2.7676 -4.5567 2.6683 28 1 1.7967 -6.3952 4.0265 29 1 -2.6377 -4.4934 5.2245 30 1 -3.1386 -2.0680 4.2832 31 1 0.7955 -4.2201 0.8106 32 1 2.7233 -3.1863 -1.2655 33 1 2.6233 -4.8098 -0.5142 34 1 0.7800 -5.4682 -1.9236 35 1 1.7704 -4.4919 -3.0554 36 1 -0.8172 -3.8329 -2.6915 37 1 0.4097 -2.5293 -2.7282 38 1 -1.0828 -3.6878 -0.3778 39 1 -0.4612 -2.0305 -0.6174 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599538708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:13 Heat of formation + Delta-G solvation = 96.441211 kcal Electronic energy + Delta-G solvation = -25323.784504 eV Core-core repulsion = 21848.074205 eV Total energy + Delta-G solvation = -3475.710299 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.93311 -39.12589 -37.60237 -36.85867 -33.78437 -33.53163 -31.83868 -30.73600 -28.79635 -27.93424 -27.01070 -26.06483 -24.07899 -23.10884 -21.74566 -20.14572 -19.98045 -19.38535 -17.94663 -17.30145 -16.66069 -16.19623 -15.73974 -15.24788 -14.97868 -14.68542 -14.22093 -14.10005 -13.84634 -13.36394 -13.24412 -12.80182 -12.60045 -12.45735 -12.35418 -11.83813 -11.34579 -11.15888 -10.84400 -10.84108 -10.79956 -10.63152 -10.51026 -10.36969 -10.27637 -9.95893 -9.79476 -9.61747 -9.23110 -8.81752 -8.62008 -7.60382 -7.33242 -6.45167 -4.25233 0.67651 1.13989 2.19171 2.93958 3.19564 3.31851 3.45361 3.59975 3.63603 3.95828 4.09047 4.34949 4.60668 4.85494 5.02476 5.08480 5.27487 5.29382 5.35802 5.47784 5.62373 5.66492 5.78408 5.88860 5.99883 6.16582 6.18939 6.24675 6.29646 6.34017 6.47149 6.55456 6.62997 6.72468 6.81685 6.93978 7.01279 7.38429 7.67186 7.76692 7.82241 8.21076 8.67228 8.76717 9.20698 9.83650 10.50041 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.013380 B = 0.007161 C = 0.005920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.216257 B = 3909.108030 C = 4728.652985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.100 3.900 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.375 4.375 8 H 0.084 0.916 9 N -0.406 5.406 10 C 0.519 3.481 11 O -0.532 6.532 12 C 0.203 3.797 13 C -0.224 4.224 14 C 0.182 3.818 15 N -0.475 5.475 16 C 0.251 3.749 17 C -0.273 4.273 18 C 0.076 3.924 19 N -0.277 5.277 20 N -0.292 5.292 21 C 0.122 3.878 22 C -0.125 4.125 23 C -0.121 4.121 24 C -0.112 4.112 25 C -0.143 4.143 26 H 0.274 0.726 27 H 0.167 0.833 28 H 0.180 0.820 29 H 0.158 0.842 30 H 0.194 0.806 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.067 0.933 38 H 0.034 0.966 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.824 -10.349 1.140 10.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.116 4.116 3 Si 0.723 3.277 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.501 4.501 8 H 0.101 0.899 9 N -0.125 5.125 10 C 0.302 3.698 11 O -0.411 6.411 12 C 0.082 3.918 13 C -0.248 4.248 14 C -0.001 4.001 15 N -0.187 5.187 16 C 0.023 3.977 17 C -0.304 4.304 18 C -0.103 4.103 19 N -0.100 5.100 20 N -0.065 5.065 21 C 0.018 3.982 22 C -0.163 4.163 23 C -0.159 4.159 24 C -0.149 4.149 25 C -0.181 4.181 26 H 0.084 0.916 27 H 0.184 0.816 28 H 0.197 0.803 29 H 0.176 0.824 30 H 0.211 0.789 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.053 0.947 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.947 -9.241 1.296 9.379 hybrid contribution 0.164 0.604 0.100 0.634 sum -0.783 -8.637 1.396 8.784 Atomic orbital electron populations 1.69787 1.07644 1.28842 1.37290 1.25537 0.94109 1.00427 0.91486 0.86534 0.80747 0.81243 0.79205 1.20004 1.21265 1.18848 1.18430 1.10604 0.89348 1.31678 0.89886 1.43065 1.53441 1.14658 1.01384 1.18049 0.82616 0.85102 0.83986 1.90745 1.47941 1.31882 1.70524 1.21879 0.81311 0.96625 0.91971 1.22164 1.03321 0.92689 1.06675 1.23208 0.90101 0.97806 0.88986 1.67886 1.07334 1.20540 1.22938 1.20805 0.95892 0.85351 0.95605 1.20876 0.95563 0.99171 1.14777 1.23892 0.97636 0.94671 0.94102 1.78348 0.97497 1.08595 1.25541 1.47460 1.11420 1.14066 1.33504 1.21981 0.93937 0.88026 0.94237 1.22613 0.98122 0.99993 0.95595 1.22438 0.97414 0.98106 0.97930 1.22203 0.96918 0.98232 0.97586 1.22692 0.95187 1.06787 0.93421 0.91570 0.81579 0.80305 0.82408 0.78903 0.93136 0.89589 0.92944 0.92658 0.92331 0.93374 0.91423 0.94670 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.64 11.59 55.51 0.64 -21.00 16 2 C 0.10 2.65 4.92 -17.43 -0.09 2.56 16 3 Si 0.90 21.22 29.69 -169.99 -5.05 16.17 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.26 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.38 -9.67 6.92 -15.07 -0.10 -9.77 16 8 H 0.08 2.10 7.18 -52.49 -0.38 1.72 16 9 N -0.41 -9.72 2.34 -107.84 -0.25 -9.97 16 10 C 0.52 12.94 7.06 -12.62 -0.09 12.85 16 11 O -0.53 -15.38 16.80 5.21 0.09 -15.29 16 12 C 0.20 4.28 4.93 -81.63 -0.40 3.88 16 13 C -0.22 -3.55 9.01 -38.97 -0.35 -3.90 16 14 C 0.18 2.47 11.25 -17.16 -0.19 2.28 16 15 N -0.47 -7.84 10.43 -12.26 -0.13 -7.96 16 16 C 0.25 4.71 7.93 -155.58 -1.23 3.47 16 17 C -0.27 -4.49 10.91 -39.16 -0.43 -4.92 16 18 C 0.08 1.30 11.94 -17.59 -0.21 1.09 16 19 N -0.28 -6.15 12.55 30.46 0.38 -5.77 16 20 N -0.29 -6.25 3.95 -8.66 -0.03 -6.29 16 21 C 0.12 2.47 3.17 -66.81 -0.21 2.26 16 22 C -0.13 -2.16 6.40 -25.03 -0.16 -2.32 16 23 C -0.12 -1.85 6.91 -24.70 -0.17 -2.02 16 24 C -0.11 -1.96 6.83 -25.07 -0.17 -2.13 16 25 C -0.14 -2.98 6.31 -25.61 -0.16 -3.14 16 26 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.17 2.16 8.06 -52.49 -0.42 1.74 16 28 H 0.18 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.16 2.08 8.06 -52.49 -0.42 1.66 16 30 H 0.19 2.42 8.06 -52.49 -0.42 2.00 16 31 H 0.05 0.99 5.67 -51.93 -0.29 0.70 16 32 H 0.09 1.62 6.35 -51.93 -0.33 1.29 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.27 8.14 -51.92 -0.42 0.84 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.13 3.22 5.16 -51.93 -0.27 2.95 16 LS Contribution 326.90 15.07 4.93 4.93 Total: -1.00 -32.91 326.90 -8.03 -40.93 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -4.63 Total: 4.07 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -3.97 Total: 0.18 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.61 Total: -50.99 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.09 Total: -15.29 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.05 Total: 16.17 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.91 -8.03 -40.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599538708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.376 kcal (2) G-P(sol) polarization free energy of solvation -32.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds