Wall clock time and date at job start Tue Mar 31 2020 08:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46936 * 2 1 4 4 C 1.50700 * 109.47733 * 120.00340 * 2 1 3 5 5 C 1.38592 * 119.54775 * 275.02696 * 4 2 1 6 6 C 1.38587 * 119.35654 * 179.97438 * 5 4 2 7 7 C 1.38624 * 118.48865 * 359.74596 * 6 5 4 8 8 C 1.39291 * 119.05838 * 0.47382 * 7 6 5 9 9 C 1.48129 * 119.72391 * 179.79238 * 8 7 6 10 10 O 1.21549 * 120.00170 * 359.72611 * 9 8 7 11 11 N 1.34771 * 119.99938 * 179.72590 * 9 8 7 12 12 C 1.40495 * 120.00129 * 180.02562 * 11 9 8 13 13 C 1.40677 * 126.08621 * 0.04130 * 12 11 9 14 14 N 1.30901 * 108.38575 * 179.68327 * 13 12 11 15 15 N 1.40065 * 108.41616 * 0.43845 * 14 13 12 16 16 C 1.37312 * 126.07092 * 179.81743 * 15 14 13 17 17 H 1.08002 * 120.00634 * 179.69737 * 16 15 14 18 18 C 1.38992 * 119.99460 * 359.41615 * 16 15 14 19 19 N 1.31294 * 120.00157 * 0.27649 * 18 16 15 20 20 Si 1.86803 * 119.99838 * 180.27795 * 18 16 15 21 21 H 1.48498 * 109.47174 * 90.00076 * 20 18 16 22 22 H 1.48501 * 109.47062 * 210.00027 * 20 18 16 23 23 H 1.48504 * 109.46913 * 329.99826 * 20 18 16 24 24 C 1.35709 * 126.09130 * 179.97438 * 12 11 9 25 25 N 1.31495 * 119.54598 * 94.99622 * 4 2 1 26 26 H 1.09004 * 109.46669 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47144 * 299.99164 * 1 2 3 28 28 H 1.08996 * 109.47538 * 59.99828 * 1 2 3 29 29 H 1.09000 * 109.47144 * 240.00836 * 2 1 3 30 30 H 1.08995 * 109.47326 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47550 * 300.00706 * 3 2 1 32 32 H 1.09006 * 109.46867 * 60.00264 * 3 2 1 33 33 H 1.08003 * 120.32335 * 359.97361 * 5 4 2 34 34 H 1.08001 * 120.76188 * 179.97438 * 6 5 4 35 35 H 1.08003 * 120.46942 * 180.26800 * 7 6 5 36 36 H 0.97006 * 120.00382 * 0.02562 * 11 9 8 37 37 H 1.08000 * 125.80695 * 359.96768 * 13 12 11 38 38 H 0.97005 * 119.99961 * 179.97438 * 19 18 16 39 39 H 1.08003 * 126.24473 * 0.07790 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0325 -0.7105 1.2304 5 6 2.1608 -0.0102 2.4195 6 6 2.6227 -0.6676 3.5486 7 6 2.9371 -2.0139 3.4477 8 6 2.7881 -2.6532 2.2192 9 6 3.1241 -4.0904 2.0936 10 8 3.5327 -4.7057 3.0589 11 7 2.9768 -4.7158 0.9089 12 6 3.2949 -6.0791 0.7899 13 6 3.7740 -6.9110 1.8182 14 7 3.9480 -8.1129 1.3296 15 7 3.5981 -8.0942 -0.0265 16 6 3.6473 -9.1616 -0.8889 17 1 3.3486 -9.0376 -1.9194 18 6 4.0870 -10.4003 -0.4371 19 7 4.4503 -10.5511 0.8155 20 14 4.1613 -11.8505 -1.6122 21 1 5.4952 -11.8922 -2.2634 22 1 3.9390 -13.1104 -0.8582 23 1 3.1086 -11.7018 -2.6491 24 6 3.1937 -6.8282 -0.3372 25 7 2.3426 -1.9864 1.1611 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9565 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.9032 1.0377 2.4657 34 1 2.7318 -0.1439 4.4869 35 1 3.2957 -2.5586 4.3086 36 1 2.6510 -4.2248 0.1383 37 1 3.9616 -6.6104 2.8384 38 1 4.7568 -11.4157 1.1309 39 1 2.8556 -6.4849 -1.3038 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762167455.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:33 Heat of formation + Delta-G solvation = 76.990491 kcal Electronic energy + Delta-G solvation = -22967.116504 eV Core-core repulsion = 19490.562758 eV Total energy + Delta-G solvation = -3476.553746 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.73890 -39.68467 -38.31300 -35.70476 -34.25542 -33.24928 -32.52895 -30.52436 -30.11553 -27.82590 -27.45166 -25.25356 -24.19379 -23.97121 -21.56505 -20.83186 -19.91961 -19.36229 -17.81181 -17.17952 -16.70318 -16.00966 -15.44377 -15.15706 -14.99242 -14.78149 -14.48033 -14.13745 -13.89727 -13.73630 -13.23955 -13.18402 -12.88275 -12.84027 -12.53602 -12.21380 -11.68733 -11.59418 -11.45776 -11.39463 -11.24629 -11.17632 -10.93775 -10.51909 -10.14932 -10.02406 -9.84019 -9.21868 -9.15064 -9.06828 -8.79143 -8.03652 -6.65473 -6.53912 -4.20171 0.65123 1.11096 2.83929 3.03234 3.06555 3.11820 3.50971 3.60961 3.83951 3.94751 3.97940 4.41022 4.49938 4.67890 4.79279 4.80187 4.91524 4.93923 5.04400 5.05680 5.10063 5.31045 5.43002 5.48328 5.53130 5.63855 5.74747 5.83693 5.97373 6.01577 6.06372 6.29040 6.46425 6.52603 6.92709 6.97997 7.14185 7.25729 7.72307 7.88329 8.22723 8.32161 8.64231 8.87082 9.39849 9.68923 10.42093 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.028165 B = 0.002888 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.916268 B = 9691.553851 C =10524.924607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C -0.147 4.147 4 C 0.134 3.866 5 C -0.158 4.158 6 C -0.080 4.080 7 C -0.121 4.121 8 C 0.101 3.899 9 C 0.548 3.452 10 O -0.532 6.532 11 N -0.597 5.597 12 C -0.062 4.062 13 C -0.031 4.031 14 N -0.260 5.260 15 N -0.142 5.142 16 C -0.322 4.322 17 H 0.117 0.883 18 C 0.046 3.954 19 N -0.770 5.770 20 Si 0.935 3.065 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.264 1.264 24 C -0.080 4.080 25 N -0.461 5.461 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.149 0.851 36 H 0.407 0.593 37 H 0.177 0.823 38 H 0.275 0.725 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.899 21.396 -0.786 22.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.066 4.066 3 C -0.205 4.205 4 C -0.007 4.007 5 C -0.178 4.178 6 C -0.106 4.106 7 C -0.142 4.142 8 C -0.038 4.038 9 C 0.333 3.667 10 O -0.409 6.409 11 N -0.238 5.238 12 C -0.168 4.168 13 C -0.206 4.206 14 N -0.091 5.091 15 N 0.091 4.909 16 C -0.454 4.454 17 H 0.134 0.866 18 C -0.171 4.171 19 N -0.396 5.396 20 Si 0.759 3.241 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.188 1.188 24 C -0.231 4.231 25 N -0.173 5.173 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.167 0.833 36 H 0.242 0.758 37 H 0.194 0.806 38 H 0.085 0.915 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.231 19.067 -0.474 19.777 hybrid contribution -0.309 0.997 -0.285 1.082 sum -5.539 20.065 -0.760 20.829 Atomic orbital electron populations 1.21807 0.93531 1.02596 1.02006 1.20062 0.96246 0.95307 0.95007 1.21926 1.01434 0.94852 1.02263 1.21209 0.95068 0.89486 0.94941 1.22131 1.00775 1.01544 0.93357 1.21594 0.95977 0.94030 0.98951 1.22135 0.98391 0.94933 0.98728 1.21296 0.97719 0.94696 0.90079 1.17647 0.80706 0.84812 0.83584 1.90680 1.46968 1.65249 1.37998 1.42329 1.61512 1.08588 1.11396 1.17301 1.19838 0.83754 0.95900 1.24137 1.05824 0.90786 0.99902 1.78248 1.24062 1.17890 0.88925 1.44558 1.34751 1.04964 1.06647 1.19886 1.46397 0.86624 0.92539 0.86569 1.25651 0.95417 0.99379 0.96689 1.70221 1.30903 1.24615 1.13869 0.85822 0.79275 0.79467 0.79544 1.19593 1.20092 1.18791 1.21278 1.16360 0.87171 0.98327 1.67395 1.09909 1.08911 1.31076 0.92061 0.92594 0.91833 0.88944 0.92288 0.91763 0.92219 0.84449 0.84245 0.83344 0.75803 0.80646 0.91460 0.83551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.18 37.16 0.34 -0.72 16 2 C -0.05 -0.40 3.23 -91.77 -0.30 -0.69 16 3 C -0.15 -0.91 8.62 37.16 0.32 -0.59 16 4 C 0.13 1.47 5.79 -82.61 -0.48 1.00 16 5 C -0.16 -1.45 9.18 -39.32 -0.36 -1.81 16 6 C -0.08 -0.77 10.17 -39.31 -0.40 -1.17 16 7 C -0.12 -1.58 9.63 -39.05 -0.38 -1.95 16 8 C 0.10 1.57 6.75 -83.01 -0.56 1.01 16 9 C 0.55 10.72 7.78 -12.20 -0.09 10.62 16 10 O -0.53 -11.88 13.47 5.32 0.07 -11.81 16 11 N -0.60 -11.92 5.45 -10.77 -0.06 -11.98 16 12 C -0.06 -1.50 6.90 -83.87 -0.58 -2.08 16 13 C -0.03 -0.84 10.85 -17.03 -0.18 -1.02 16 14 N -0.26 -7.72 10.39 30.81 0.32 -7.40 16 15 N -0.14 -3.98 3.74 -11.40 -0.04 -4.02 16 16 C -0.32 -8.65 10.25 -14.82 -0.15 -8.81 16 17 H 0.12 2.78 7.83 -52.49 -0.41 2.37 16 18 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 19 N -0.77 -21.75 11.81 55.50 0.66 -21.10 16 20 Si 0.94 19.13 29.55 -169.99 -5.02 14.10 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 22 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 24 C -0.08 -1.96 11.49 -16.38 -0.19 -2.15 16 25 N -0.46 -6.48 9.45 -6.06 -0.06 -6.54 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.30 6.49 -51.93 -0.34 -0.03 16 33 H 0.14 0.86 6.30 -52.48 -0.33 0.52 16 34 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.15 1.90 7.64 -52.48 -0.40 1.50 16 36 H 0.41 6.98 8.15 -40.82 -0.33 6.65 16 37 H 0.18 4.68 5.92 -52.49 -0.31 4.37 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.15 3.00 8.06 -52.48 -0.42 2.58 16 LS Contribution 336.11 15.07 5.07 5.07 Total: -1.00 -33.59 336.11 -6.81 -40.41 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -4.64 Total: 10.53 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -3.11 Total: -7.27 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.82 Total: -51.03 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.07 Total: -11.81 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.59 -6.81 -40.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762167455.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.400 kcal (2) G-P(sol) polarization free energy of solvation -33.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds