Wall clock time and date at job start Tue Mar 31 2020 07:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38329 * 120.86773 * 2 1 4 4 C 1.38354 * 119.33310 * 180.02562 * 3 2 1 5 5 N 1.31973 * 121.13912 * 359.97438 * 4 3 2 6 6 C 1.31631 * 121.90597 * 0.02562 * 5 4 3 7 7 C 1.39837 * 120.52641 * 359.97438 * 6 5 4 8 8 C 1.47205 * 120.58845 * 180.02562 * 7 6 5 9 9 C 1.34810 * 119.99766 * 310.80722 * 8 7 6 10 10 C 1.46427 * 120.00179 * 349.87748 * 9 8 7 11 11 O 1.21697 * 119.99924 * 353.11877 * 10 9 8 12 12 N 1.34776 * 119.99930 * 173.11625 * 10 9 8 13 13 C 1.46920 * 120.63168 * 354.41135 * 12 10 9 14 14 C 1.53624 * 108.54384 * 126.37172 * 13 12 10 15 15 C 1.53042 * 109.24124 * 54.85482 * 14 13 12 16 16 C 1.50701 * 109.44556 * 178.49953 * 15 14 13 17 17 H 1.08000 * 119.99718 * 120.07029 * 16 15 14 18 18 C 1.37872 * 120.00030 * 300.05873 * 16 15 14 19 19 N 1.31515 * 120.00287 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99900 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46794 * 60.00542 * 20 18 16 22 22 H 1.48501 * 109.47049 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47133 * 300.00693 * 20 18 16 24 24 C 1.53037 * 109.53887 * 298.51198 * 15 14 13 25 25 C 1.46931 * 120.62885 * 174.69799 * 12 10 9 26 26 H 1.09002 * 109.46710 * 269.98290 * 1 2 3 27 27 H 1.09004 * 109.46991 * 29.97486 * 1 2 3 28 28 H 1.08993 * 109.47206 * 149.97928 * 1 2 3 29 29 H 1.08001 * 120.33361 * 359.97438 * 3 2 1 30 30 H 1.07998 * 119.43044 * 179.97438 * 4 3 2 31 31 H 1.07998 * 119.73701 * 180.27718 * 6 5 4 32 32 H 1.08001 * 120.00065 * 130.80570 * 8 7 6 33 33 H 1.07999 * 120.00044 * 169.88406 * 9 8 7 34 34 H 1.08999 * 109.58864 * 246.20562 * 13 12 10 35 35 H 1.09006 * 109.58790 * 6.62691 * 13 12 10 36 36 H 1.09004 * 109.63096 * 294.86972 * 14 13 12 37 37 H 1.09002 * 109.43343 * 174.72807 * 14 13 12 38 38 H 1.08998 * 109.45455 * 58.53236 * 15 14 13 39 39 H 0.96998 * 120.00287 * 179.97438 * 19 18 16 40 40 H 1.08995 * 109.50060 * 301.41907 * 24 15 14 41 41 H 1.09002 * 109.50074 * 181.31406 * 24 15 14 42 42 H 1.09003 * 109.58277 * 353.36841 * 25 12 10 43 43 H 1.09000 * 109.58772 * 113.65325 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2168 1.1874 0.0000 4 6 3.5998 1.1503 -0.0005 5 7 4.2518 0.0029 -0.0005 6 6 3.6239 -1.1541 -0.0005 7 6 2.2264 -1.2038 0.0000 8 6 1.5228 -2.4968 0.0006 9 6 1.8706 -3.4537 -0.8831 10 6 2.7860 -3.1382 -1.9815 11 8 3.1342 -1.9878 -2.1720 12 7 3.2430 -4.1219 -2.7815 13 6 2.9308 -5.5281 -2.4919 14 6 2.3057 -6.1580 -3.7458 15 6 3.2476 -5.9557 -4.9350 16 6 2.6557 -6.6041 -6.1598 17 1 2.4353 -6.0082 -7.0331 18 6 2.3959 -7.9582 -6.1656 19 7 2.6641 -8.6838 -5.1020 20 14 1.6629 -8.7621 -7.6842 21 1 2.5778 -8.5674 -8.8376 22 1 1.4806 -10.2148 -7.4360 23 1 0.3474 -8.1429 -7.9859 24 6 3.4347 -4.4585 -5.1907 25 6 4.0680 -3.8089 -3.9563 26 1 -0.3633 -0.0003 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8897 -0.5141 29 1 1.6965 2.1338 -0.0004 30 1 4.1555 2.0764 -0.0010 31 1 4.1926 -2.0722 0.0040 32 1 0.7281 -2.6788 0.7089 33 1 1.4739 -4.4530 -0.7809 34 1 3.8460 -6.0592 -2.2303 35 1 2.2248 -5.5825 -1.6631 36 1 1.3475 -5.6825 -3.9557 37 1 2.1543 -7.2245 -3.5789 38 1 4.2135 -6.4099 -4.7143 39 1 2.4809 -9.6363 -5.1060 40 1 2.4659 -3.9990 -5.3869 41 1 4.0870 -4.3152 -6.0522 42 1 4.1125 -2.7285 -4.0941 43 1 5.0748 -4.2005 -3.8106 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492500406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:39 Heat of formation + Delta-G solvation = 15.768952 kcal Electronic energy + Delta-G solvation = -24194.365769 eV Core-core repulsion = 20818.697602 eV Total energy + Delta-G solvation = -3375.668167 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.41273 -39.39291 -36.92005 -34.64411 -33.54118 -33.18156 -31.41302 -30.19442 -29.74317 -27.76306 -26.34762 -24.57474 -23.11762 -22.45005 -21.99426 -21.19054 -19.34974 -18.06504 -17.40936 -16.46177 -16.33215 -16.17867 -15.61901 -14.81773 -14.60863 -14.52330 -14.16171 -13.72697 -13.55526 -13.10412 -13.01508 -12.91612 -12.78837 -12.72191 -12.67853 -12.35804 -12.13972 -11.61696 -11.39020 -11.30678 -10.94884 -10.69476 -10.42044 -10.16538 -10.11123 -9.77861 -9.56326 -9.35376 -9.20389 -9.18134 -8.93277 -8.40662 -8.24196 -7.98198 -6.05916 -4.12150 0.71713 1.38991 1.77125 3.27779 3.32527 3.35693 3.46376 3.57988 3.93796 4.38491 4.49085 4.66768 4.73589 4.78203 4.84542 5.11220 5.22124 5.26525 5.36208 5.40922 5.52315 5.63653 5.72450 5.79476 5.85680 5.90925 6.03495 6.06009 6.08790 6.13926 6.25203 6.25316 6.40042 6.44652 6.63681 6.80543 6.87921 7.01729 7.11959 7.24870 7.63256 7.88879 7.91433 8.00863 8.13359 8.37254 8.55583 8.90997 9.53058 10.99500 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.030332 B = 0.003169 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.886189 B = 8833.898336 C = 9048.015267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.033 4.033 3 C -0.185 4.185 4 C 0.099 3.901 5 N -0.494 5.494 6 C 0.174 3.826 7 C -0.105 4.105 8 C -0.041 4.041 9 C -0.191 4.191 10 C 0.533 3.467 11 O -0.549 6.549 12 N -0.591 5.591 13 C 0.099 3.901 14 C -0.124 4.124 15 C 0.049 3.951 16 C -0.513 4.513 17 H 0.054 0.946 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.278 1.278 24 C -0.123 4.123 25 C 0.113 3.887 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.129 0.871 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.039 0.961 37 H 0.104 0.896 38 H 0.027 0.973 39 H 0.261 0.739 40 H 0.051 0.949 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.432 12.837 13.102 18.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.041 4.041 3 C -0.205 4.205 4 C -0.056 4.056 5 N -0.204 5.204 6 C 0.016 3.984 7 C -0.107 4.107 8 C -0.061 4.061 9 C -0.211 4.211 10 C 0.322 3.678 11 O -0.430 6.430 12 N -0.322 5.322 13 C -0.022 4.022 14 C -0.163 4.163 15 C 0.030 3.970 16 C -0.551 4.551 17 H 0.072 0.928 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.161 4.161 25 C -0.009 4.009 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.147 0.853 30 H 0.166 0.834 31 H 0.161 0.839 32 H 0.153 0.847 33 H 0.158 0.842 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.122 0.878 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.330 13.240 13.021 18.715 hybrid contribution -1.424 -0.751 -1.019 1.906 sum -3.754 12.488 12.002 17.723 Atomic orbital electron populations 1.20810 0.90552 1.03401 1.02457 1.20317 0.96203 0.92207 0.95363 1.21791 0.95592 0.98141 1.05006 1.22668 0.91620 0.96177 0.95095 1.67562 1.40941 0.98396 1.13460 1.22647 0.90212 0.95612 0.89955 1.19749 0.94797 0.93086 1.03092 1.22144 0.96083 0.91107 0.96798 1.23332 1.01309 1.00230 0.96261 1.18406 0.81084 0.85084 0.83178 1.90819 1.59637 1.19869 1.72661 1.48208 1.50381 1.07225 1.26396 1.22230 1.00167 0.79864 0.99983 1.22109 0.98200 1.02805 0.93147 1.18627 0.95582 0.88987 0.93759 1.21172 1.41622 0.93036 0.99282 0.92778 1.24952 0.95548 0.97327 0.96082 1.69819 1.48509 1.06634 1.28149 0.86675 0.79724 0.78207 0.83503 1.20294 1.21289 1.20346 1.22009 0.99681 0.99394 0.95028 1.21692 0.93344 1.00667 0.85242 0.90697 0.91126 0.90999 0.85327 0.83397 0.83902 0.84672 0.84244 0.91744 0.91194 0.94216 0.87769 0.95443 0.92905 0.93042 0.92154 0.90409 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 9.69 36.01 0.35 -0.67 16 2 C -0.03 -0.40 5.96 -103.84 -0.62 -1.02 16 3 C -0.19 -2.12 9.80 -39.50 -0.39 -2.50 16 4 C 0.10 1.27 11.17 -17.45 -0.19 1.07 16 5 N -0.49 -7.66 10.34 -12.83 -0.13 -7.79 16 6 C 0.17 2.65 7.95 -17.04 -0.14 2.51 16 7 C -0.11 -1.42 4.33 -104.91 -0.45 -1.87 16 8 C -0.04 -0.47 8.43 -37.16 -0.31 -0.78 16 9 C -0.19 -2.50 9.25 -37.50 -0.35 -2.85 16 10 C 0.53 9.03 6.89 -12.96 -0.09 8.94 16 11 O -0.55 -10.61 11.88 5.19 0.06 -10.54 16 12 N -0.59 -10.44 2.97 -174.14 -0.52 -10.96 16 13 C 0.10 1.71 6.38 -3.49 -0.02 1.69 16 14 C -0.12 -2.66 5.17 -26.39 -0.14 -2.80 16 15 C 0.05 1.15 2.06 -91.73 -0.19 0.96 16 16 C -0.51 -13.56 8.56 -34.44 -0.29 -13.86 16 17 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 18 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 19 N -0.89 -24.12 11.30 55.43 0.63 -23.50 16 20 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C -0.12 -2.52 5.30 -26.61 -0.14 -2.66 16 25 C 0.11 2.08 6.42 -3.71 -0.02 2.06 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 28 H 0.07 0.65 7.20 -51.93 -0.37 0.28 16 29 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 30 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.14 2.16 7.53 -52.49 -0.40 1.76 16 32 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.14 1.55 5.92 -52.49 -0.31 1.24 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.07 1.00 5.32 -51.93 -0.28 0.72 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.10 2.48 6.03 -51.93 -0.31 2.17 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.08 1.46 7.04 -51.93 -0.37 1.09 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 344.36 15.07 5.19 5.19 Total: -1.00 -30.51 344.36 -9.11 -39.62 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.22 Total: 2.55 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -3.09 Total: -10.24 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: -0.02 Total: -42.24 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.06 Total: -10.54 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.51 -9.11 -39.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492500406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.391 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds