Wall clock time and date at job start Tue Mar 31 2020 08:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46814 * 2 1 4 4 H 1.08996 * 109.46767 * 304.99371 * 3 2 1 5 5 C 1.52998 * 109.47471 * 65.00205 * 3 2 1 6 6 C 1.53006 * 109.46850 * 184.99893 * 3 2 1 7 7 N 1.46893 * 109.47217 * 174.99981 * 6 3 2 8 8 C 1.46901 * 110.99973 * 180.02562 * 7 6 3 9 9 H 1.09002 * 110.63998 * 325.69872 * 8 7 6 10 10 C 1.55153 * 110.71914 * 202.55835 * 8 7 6 11 11 C 1.54915 * 101.58175 * 205.95584 * 10 8 7 12 12 N 1.47428 * 104.83102 * 37.00975 * 11 10 8 13 13 C 1.34778 * 125.64860 * 155.91040 * 12 11 10 14 14 O 1.21278 * 119.99825 * 179.97438 * 13 12 11 15 15 C 1.50701 * 119.99622 * 359.97438 * 13 12 11 16 16 S 1.81000 * 109.46676 * 179.97438 * 15 13 12 17 17 C 1.76201 * 100.00088 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99925 * 359.97438 * 17 16 15 19 19 C 1.38800 * 120.00421 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99639 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00229 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47376 * 59.99980 * 21 19 17 23 23 H 1.48500 * 109.47227 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47007 * 299.99769 * 21 19 17 25 25 C 1.47486 * 108.75727 * 335.89255 * 12 11 10 26 26 H 1.08997 * 109.46550 * 60.00155 * 1 2 3 27 27 H 1.08996 * 109.47024 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47271 * 300.00305 * 1 2 3 29 29 H 1.08995 * 109.47271 * 239.99695 * 2 1 3 30 30 H 1.08997 * 109.46550 * 119.99845 * 2 1 3 31 31 H 1.09002 * 109.47176 * 59.99556 * 5 3 2 32 32 H 1.08996 * 109.47357 * 179.97438 * 5 3 2 33 33 H 1.09001 * 109.46698 * 299.99634 * 5 3 2 34 34 H 1.09000 * 109.46782 * 54.99531 * 6 3 2 35 35 H 1.08996 * 109.46902 * 295.00356 * 6 3 2 36 36 H 1.00894 * 110.99837 * 56.04544 * 7 6 3 37 37 H 1.09003 * 111.00505 * 324.03068 * 10 8 7 38 38 H 1.09001 * 111.00757 * 87.88151 * 10 8 7 39 39 H 1.09000 * 110.36497 * 155.84404 * 11 10 8 40 40 H 1.08996 * 110.36659 * 278.05860 * 11 10 8 41 41 H 1.08997 * 109.47351 * 299.99464 * 15 13 12 42 42 H 1.08992 * 109.47253 * 60.00061 * 15 13 12 43 43 H 0.96999 * 119.99517 * 179.97438 * 20 19 17 44 44 H 1.09000 * 110.02886 * 241.65974 * 25 12 11 45 45 H 1.09005 * 109.96368 * 120.34831 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5649 1.4444 -0.1257 7 7 4.0446 2.8275 -0.2461 8 6 5.5079 2.8683 -0.3696 9 1 5.9653 2.0715 0.2168 10 6 6.0569 4.2533 0.0637 11 6 7.3786 4.3294 -0.7407 12 7 7.0706 3.6920 -2.0339 13 6 7.7206 3.9140 -3.1936 14 8 7.3800 3.3306 -4.2008 15 6 8.8705 4.8870 -3.2385 16 16 9.5297 4.9643 -4.9224 17 6 10.8216 6.1401 -4.6916 18 1 10.9922 6.5702 -3.7157 19 6 11.6193 6.5144 -5.7640 20 7 11.4110 5.9905 -6.9535 21 14 12.9893 7.7603 -5.5191 22 1 13.9553 7.2433 -4.5168 23 1 13.6882 7.9877 -6.8094 24 1 12.4131 9.0410 -5.0365 25 6 5.9338 2.7706 -1.8497 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0699 1.5876 2.1492 32 1 1.9990 3.1541 1.3075 33 1 0.5490 2.1253 1.3968 34 1 3.8571 0.8800 -1.0112 35 1 4.0029 0.9836 0.7596 36 1 3.7313 3.3879 0.5322 37 1 5.3754 5.0524 -0.2280 38 1 6.2502 4.2789 1.1361 39 1 7.6723 5.3684 -0.8903 40 1 8.1684 3.7831 -0.2252 41 1 8.5221 5.8753 -2.9387 42 1 9.6537 4.5556 -2.5570 43 1 11.9682 6.2523 -7.7031 44 1 6.2391 1.7501 -2.0810 45 1 5.1062 3.0673 -2.4940 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181106708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:05 Heat of formation + Delta-G solvation = -50.937021 kcal Electronic energy + Delta-G solvation = -21759.962916 eV Core-core repulsion = 18516.846112 eV Total energy + Delta-G solvation = -3243.116804 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.161 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.83861 -38.21434 -36.95755 -34.32126 -32.40843 -31.19915 -29.69800 -29.54892 -27.57968 -26.31958 -25.43706 -23.60813 -22.52455 -20.95942 -20.15242 -19.26747 -17.69013 -16.91272 -16.49403 -15.95476 -15.48545 -15.05075 -14.93011 -14.78392 -14.44757 -14.02342 -13.82299 -13.66956 -13.52989 -13.28781 -12.85657 -12.54100 -12.44460 -12.32256 -12.25677 -11.95315 -11.73291 -11.70591 -11.47009 -11.13448 -11.02340 -11.02001 -10.94593 -10.87134 -10.78922 -10.72137 -9.80394 -9.36558 -9.03962 -8.79359 -8.43915 -8.20733 -6.47710 -6.19318 -3.89909 2.92177 3.12749 3.24792 3.26793 3.30390 3.60414 3.82902 4.19564 4.23571 4.43066 4.49569 4.55618 4.60153 4.85788 4.93570 5.03422 5.14157 5.14724 5.14983 5.15738 5.21489 5.27786 5.31953 5.48919 5.52067 5.54895 5.59024 5.63541 5.64876 5.68485 5.70593 5.77033 5.83084 5.96136 5.96974 6.01677 6.06460 6.16465 6.47260 6.73315 7.03251 7.61098 7.73090 8.37073 8.62024 9.25541 10.88068 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.040891 B = 0.002273 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.575232 B =12313.409493 C =12812.219099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.092 4.092 4 H 0.081 0.919 5 C -0.151 4.151 6 C 0.061 3.939 7 N -0.679 5.679 8 C 0.074 3.926 9 H 0.061 0.939 10 C -0.135 4.135 11 C 0.104 3.896 12 N -0.626 5.626 13 C 0.548 3.452 14 O -0.516 6.516 15 C -0.146 4.146 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.120 3.880 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.030 0.970 36 H 0.344 0.656 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.269 0.731 44 H 0.061 0.939 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.974 -8.016 20.682 28.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.111 4.111 4 H 0.100 0.900 5 C -0.208 4.208 6 C -0.068 4.068 7 N -0.312 5.312 8 C -0.036 4.036 9 H 0.079 0.921 10 C -0.173 4.173 11 C -0.020 4.020 12 N -0.364 5.364 13 C 0.336 3.664 14 O -0.390 6.390 15 C -0.297 4.297 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.004 4.004 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.164 0.836 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.482 -8.852 18.225 27.424 hybrid contribution 1.584 1.244 2.308 3.064 sum -16.898 -7.608 20.533 27.659 Atomic orbital electron populations 1.21807 0.95740 1.01528 1.01962 1.21539 0.96070 0.96119 1.02034 1.21193 0.94656 0.96327 0.98938 0.90046 1.21909 1.01640 1.00354 0.96914 1.22103 0.94755 0.89414 1.00491 1.60393 1.09408 1.11710 1.49674 1.22539 0.87859 0.97268 0.95959 0.92140 1.22981 0.97155 0.97247 0.99940 1.22217 0.96745 0.99043 0.84016 1.48563 1.34263 1.44819 1.08779 1.20016 0.82743 0.82437 0.81185 1.90707 1.66011 1.49419 1.32816 1.23503 0.98021 1.00027 1.08121 1.85410 1.39520 1.57137 1.01319 1.22821 1.18636 1.28515 0.98390 0.90995 1.24995 0.97508 0.96655 0.94446 1.70014 1.38642 1.41579 1.00033 0.86221 0.80859 0.80761 0.77633 1.19957 1.20811 1.19947 1.21909 0.89334 0.93566 0.95569 0.92614 0.92888 0.92585 0.91786 0.92179 0.93049 0.92527 0.92273 0.90724 0.95176 0.83606 0.89485 0.90025 0.90076 0.91394 0.89318 0.89361 0.92140 0.92061 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.67 37.16 0.36 -0.50 16 2 C -0.12 -0.72 5.40 -26.73 -0.14 -0.87 16 3 C -0.09 -0.60 2.60 -90.62 -0.24 -0.84 16 4 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 5 C -0.15 -0.83 8.72 37.16 0.32 -0.51 16 6 C 0.06 0.46 5.01 -3.82 -0.02 0.44 16 7 N -0.68 -5.55 6.30 -104.80 -0.66 -6.21 16 8 C 0.07 0.68 3.25 -65.88 -0.21 0.46 16 9 H 0.06 0.52 7.86 -51.93 -0.41 0.11 16 10 C -0.13 -1.10 6.49 -24.58 -0.16 -1.26 16 11 C 0.10 1.13 6.69 -2.52 -0.02 1.12 16 12 N -0.63 -9.55 3.34 -170.14 -0.57 -10.12 16 13 C 0.55 11.09 7.87 -10.98 -0.09 11.00 16 14 O -0.52 -12.53 16.19 5.56 0.09 -12.44 16 15 C -0.15 -3.09 5.16 36.01 0.19 -2.90 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 17 C -0.54 -15.44 9.50 30.94 0.29 -15.15 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.43 13.22 55.49 0.73 -25.70 16 21 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 C 0.12 1.58 6.64 -2.81 -0.02 1.56 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.29 6.56 -51.93 -0.34 -0.05 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.30 6.68 -51.93 -0.35 -0.04 16 33 H 0.06 0.31 6.57 -51.93 -0.34 -0.03 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.03 0.21 8.08 -51.93 -0.42 -0.21 16 36 H 0.34 2.31 6.71 -39.29 -0.26 2.05 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.87 7.48 -51.93 -0.39 0.48 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.73 7.85 -51.92 -0.41 1.33 16 42 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.08 1.17 8.03 -51.93 -0.42 0.76 16 LS Contribution 372.62 15.07 5.62 5.62 Total: -1.00 -34.17 372.62 -9.80 -43.98 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -7.95 Total: -2.34 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 0.17 Total: -5.43 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: -0.49 Total: -42.03 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.09 Total: -12.44 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.17 -9.80 -43.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181106708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.961 kcal (2) G-P(sol) polarization free energy of solvation -34.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds