Wall clock time and date at job start Tue Mar 31 2020 08:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46612 * 2 1 4 4 H 1.08997 * 109.47406 * 54.81963 * 3 2 1 5 5 O 1.42898 * 109.47428 * 294.81155 * 3 2 1 6 6 C 1.42899 * 113.99760 * 146.13496 * 5 3 2 7 7 C 1.50703 * 109.46702 * 174.81438 * 3 2 1 8 8 O 1.21289 * 119.99671 * 120.00216 * 7 3 2 9 9 N 1.34773 * 120.00338 * 300.00490 * 7 3 2 10 10 C 1.46500 * 120.00238 * 179.97438 * 9 7 3 11 11 C 1.52998 * 109.47565 * 179.97438 * 10 9 7 12 12 H 1.09002 * 108.44758 * 62.11959 * 11 10 9 13 13 C 1.46912 * 108.62483 * 180.02562 * 11 10 9 14 14 N 1.50117 * 106.77859 * 177.92296 * 13 11 10 15 15 C 1.36933 * 120.63867 * 111.37459 * 14 13 11 16 16 H 1.07995 * 120.00139 * 155.35483 * 15 14 13 17 17 C 1.38809 * 119.99787 * 335.34730 * 15 14 13 18 18 N 1.31615 * 120.00241 * 341.65689 * 17 15 14 19 19 Si 1.86801 * 119.99647 * 161.65935 * 17 15 14 20 20 H 1.48499 * 109.47201 * 60.00177 * 19 17 15 21 21 H 1.48506 * 109.46876 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47210 * 299.99897 * 19 17 15 23 23 C 1.43424 * 118.72128 * 291.34782 * 14 13 11 24 24 C 1.55330 * 116.24173 * 89.35580 * 23 14 13 25 25 C 1.55185 * 108.87443 * 319.46270 * 24 23 14 26 26 O 1.39647 * 110.56336 * 322.14246 * 25 24 23 27 27 H 1.08999 * 109.46783 * 305.20764 * 1 2 3 28 28 H 1.08994 * 109.47110 * 65.21064 * 1 2 3 29 29 H 1.09003 * 109.46888 * 185.21121 * 1 2 3 30 30 H 1.09004 * 109.46897 * 240.00336 * 2 1 3 31 31 H 1.08998 * 109.47308 * 119.99926 * 2 1 3 32 32 H 1.08999 * 109.47328 * 184.48523 * 6 5 3 33 33 H 1.09006 * 109.47385 * 304.48472 * 6 5 3 34 34 H 1.09006 * 109.47219 * 64.48292 * 6 5 3 35 35 H 0.96999 * 119.99674 * 359.97438 * 9 7 3 36 36 H 1.09007 * 109.47092 * 59.99893 * 10 9 7 37 37 H 1.08998 * 109.47334 * 300.00015 * 10 9 7 38 38 H 1.08998 * 109.99120 * 58.60334 * 13 11 10 39 39 H 1.09009 * 109.98779 * 297.23742 * 13 11 10 40 40 H 0.97000 * 120.00147 * 180.02562 * 18 17 15 41 41 H 1.09001 * 108.12644 * 211.11339 * 23 14 13 42 42 H 1.09004 * 108.13031 * 327.81613 * 23 14 13 43 43 H 1.09005 * 109.56596 * 79.27477 * 24 23 14 44 44 H 1.08991 * 109.57301 * 199.63891 * 24 23 14 45 45 H 1.09000 * 109.25945 * 82.41899 * 25 24 23 46 46 H 1.09003 * 109.26059 * 201.86268 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6028 1.9824 0.8399 5 8 1.6657 2.0801 -1.2229 6 6 1.3744 3.4725 -1.0869 7 6 3.5415 1.4445 0.1284 8 8 4.2238 1.9429 -0.7417 9 7 4.1261 0.8924 1.2100 10 6 5.5858 0.8938 1.3346 11 6 5.9867 0.2118 2.6441 12 1 5.6484 -0.8239 2.6113 13 6 7.4519 0.2241 2.7502 14 7 7.7963 -0.4061 4.0684 15 6 8.4171 -1.6256 4.1179 16 1 9.0079 -1.8961 4.9805 17 6 8.2869 -2.5141 3.0594 18 7 7.3094 -2.3644 2.1909 19 14 9.4992 -3.9223 2.8677 20 1 9.4457 -4.7891 4.0723 21 1 9.1446 -4.7206 1.6667 22 1 10.8713 -3.3765 2.7112 23 6 7.4631 0.2940 5.2750 24 6 6.0554 0.0102 5.8673 25 6 5.0295 -0.0724 4.7059 26 8 5.3273 0.8709 3.7202 27 1 -0.3633 0.5925 0.8397 28 1 -0.3633 0.4309 -0.9329 29 1 -0.3633 -1.0235 0.0933 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 1.0225 3.8650 -2.0410 33 1 0.6019 3.6100 -0.3303 34 1 2.2768 4.0047 -0.7857 35 1 3.5803 0.4942 1.9060 36 1 5.9495 1.9215 1.3344 37 1 6.0227 0.3537 0.4947 38 1 7.8191 1.2500 2.7203 39 1 7.8893 -0.3532 1.9355 40 1 7.2182 -2.9855 1.4515 41 1 8.2064 0.0401 6.0307 42 1 7.5352 1.3636 5.0775 43 1 6.0711 -0.9358 6.4086 44 1 5.7753 0.8162 6.5453 45 1 5.0604 -1.0706 4.2692 46 1 4.0294 0.1182 5.0954 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149348708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:56 Heat of formation + Delta-G solvation = -120.866383 kcal Electronic energy + Delta-G solvation = -26252.398179 eV Core-core repulsion = 22563.496139 eV Total energy + Delta-G solvation = -3688.902040 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.28367 -40.45902 -38.48570 -36.79822 -36.00180 -34.61691 -33.74916 -32.87100 -30.42177 -28.96603 -27.48476 -27.06208 -26.26955 -24.22942 -23.00356 -22.40275 -21.39201 -21.21669 -19.01492 -18.58860 -18.06194 -17.62388 -16.94644 -16.61700 -16.35891 -16.21026 -15.91231 -15.61212 -15.50570 -15.10295 -14.83977 -14.78884 -14.29686 -14.21049 -13.93758 -13.57213 -13.36902 -13.26346 -12.99686 -12.92900 -12.60619 -12.52586 -12.44100 -12.31084 -12.06237 -11.93071 -11.78132 -11.73919 -11.57553 -11.37695 -11.18724 -10.56114 -10.39939 -10.21210 -10.09377 -8.71251 -7.89458 -5.30985 1.48178 1.52227 1.54786 1.56859 2.08531 2.52184 2.82807 3.10998 3.28059 3.50207 3.67437 3.88325 3.93364 4.15908 4.27849 4.35031 4.37875 4.40430 4.44635 4.54320 4.54843 4.60112 4.72848 4.78423 4.80509 4.82652 4.86675 4.96680 5.07899 5.11242 5.17435 5.18920 5.19982 5.34885 5.38647 5.42632 5.43045 5.51030 5.67772 6.02654 6.36504 6.51479 6.57063 7.10810 7.21546 7.83049 8.36022 9.16243 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.017731 B = 0.003992 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.789595 B = 7012.195450 C = 7540.942511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C 0.081 3.919 4 H 0.117 0.883 5 O -0.380 6.380 6 C 0.024 3.976 7 C 0.481 3.519 8 O -0.582 6.582 9 N -0.702 5.702 10 C 0.133 3.867 11 C 0.083 3.917 12 H 0.086 0.914 13 C 0.144 3.856 14 N -0.601 5.601 15 C -0.266 4.266 16 H 0.063 0.937 17 C -0.034 4.034 18 N -0.918 5.918 19 Si 0.959 3.041 20 H -0.280 1.280 21 H -0.294 1.294 22 H -0.286 1.286 23 C 0.154 3.846 24 C -0.165 4.165 25 C 0.067 3.933 26 O -0.366 6.366 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.028 0.972 35 H 0.411 0.589 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.022 0.978 39 H 0.078 0.922 40 H 0.251 0.749 41 H 0.030 0.970 42 H 0.033 0.967 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.037 0.963 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.973 6.632 0.601 16.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.156 4.156 3 C 0.020 3.980 4 H 0.135 0.865 5 O -0.297 6.297 6 C -0.072 4.072 7 C 0.268 3.732 8 O -0.462 6.462 9 N -0.354 5.354 10 C 0.007 3.993 11 C 0.023 3.977 12 H 0.103 0.897 13 C 0.019 3.981 14 N -0.323 5.323 15 C -0.396 4.396 16 H 0.081 0.919 17 C -0.231 4.231 18 N -0.563 5.563 19 Si 0.788 3.212 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.213 1.213 23 C 0.026 3.974 24 C -0.206 4.206 25 C -0.011 4.011 26 O -0.285 6.285 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.088 0.912 34 H 0.047 0.953 35 H 0.248 0.752 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.040 0.960 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.055 0.945 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.545 7.000 -0.317 16.145 hybrid contribution 1.047 -1.107 0.232 1.542 sum -13.498 5.893 -0.085 14.728 Atomic orbital electron populations 1.21684 0.92581 1.02925 1.02698 1.21669 0.98758 0.91724 1.03450 1.22254 0.88186 0.97727 0.89832 0.86508 1.87948 1.87250 1.23823 1.30668 1.23040 0.99463 0.80537 1.04149 1.22132 0.92737 0.77273 0.81033 1.90664 1.66584 1.47300 1.41685 1.45841 1.07486 1.59334 1.22774 1.21363 0.80719 1.00097 0.97095 1.21718 0.94923 0.96535 0.84475 0.89673 1.20667 0.93608 0.94047 0.89765 1.44199 1.68265 1.19263 1.00554 1.19383 1.23049 0.92526 1.04613 0.91901 1.25466 0.98691 0.99499 0.99413 1.69968 1.30288 1.39065 1.16997 0.85484 0.79366 0.79528 0.76825 1.20550 1.22032 1.21304 1.20494 0.94075 0.94664 0.88184 1.23494 0.97768 1.01165 0.98157 1.22424 0.97609 0.91612 0.89414 1.87505 1.76730 1.34302 1.29919 0.91092 0.92509 0.91240 0.92213 0.88975 0.88036 0.91199 0.95347 0.75209 0.92660 0.92370 0.95981 0.90406 0.93954 0.95141 0.94813 0.92759 0.90283 0.94474 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.76 71.98 0.70 -1.37 16 2 C -0.12 -2.34 5.59 30.60 0.17 -2.17 16 3 C 0.08 1.90 2.54 29.85 0.08 1.98 16 4 H 0.12 1.99 7.68 -2.39 -0.02 1.98 16 5 O -0.38 -9.90 9.51 -129.94 -1.24 -11.13 16 6 C 0.02 0.47 10.87 113.37 1.23 1.70 16 7 C 0.48 15.58 7.23 87.66 0.63 16.21 16 8 O -0.58 -24.32 16.50 15.98 0.26 -24.05 16 9 N -0.70 -21.86 5.26 -463.05 -2.43 -24.30 16 10 C 0.13 4.98 5.27 86.38 0.45 5.43 16 11 C 0.08 3.31 2.00 28.70 0.06 3.37 16 12 H 0.09 3.87 5.24 -2.39 -0.01 3.86 16 13 C 0.14 6.59 4.71 83.78 0.39 6.99 16 14 N -0.60 -28.71 2.61 -706.00 -1.84 -30.56 16 15 C -0.27 -13.87 9.62 84.03 0.81 -13.06 16 16 H 0.06 3.28 7.87 -2.91 -0.02 3.25 16 17 C -0.03 -1.78 4.94 84.86 0.42 -1.36 16 18 N -0.92 -48.32 9.52 21.65 0.21 -48.12 16 19 Si 0.96 43.01 29.59 68.60 2.03 45.04 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 22 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 23 C 0.15 6.27 5.33 87.75 0.47 6.74 16 24 C -0.16 -5.65 6.75 32.14 0.22 -5.43 16 25 C 0.07 2.27 6.38 72.73 0.46 2.73 16 26 O -0.37 -13.31 9.34 -137.26 -1.28 -14.59 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.90 7.97 -2.39 -0.02 0.88 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.09 1.62 7.42 -2.39 -0.02 1.61 16 32 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 0.93 7.99 -2.38 -0.02 0.92 16 34 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.41 10.79 7.55 -92.71 -0.70 10.09 16 36 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 3.99 6.02 -2.38 -0.01 3.98 16 40 H 0.25 13.13 8.31 -92.71 -0.77 12.36 16 41 H 0.03 1.23 7.96 -2.39 -0.02 1.21 16 42 H 0.03 1.34 7.98 -2.38 -0.02 1.32 16 43 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.04 1.47 6.66 -2.39 -0.02 1.46 16 46 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -64.18 362.84 2.06 -62.12 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.26 Total: 23.82 kcal Atomic # 6 Polarization: 15.67 SS G_CDS: 6.10 Total: 21.76 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -4.07 Total: -102.97 kcal Atomic # 8 Polarization: -47.52 SS G_CDS: -2.25 Total: -49.77 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -64.18 2.06 -62.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149348708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.748 kcal (2) G-P(sol) polarization free energy of solvation -64.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds