Wall clock time and date at job start Tue Mar 31 2020 07:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00421 * 2 1 4 4 H 1.48496 * 109.47500 * 240.00182 * 3 2 1 5 5 H 1.48504 * 109.46861 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47254 * 119.99621 * 3 2 1 7 7 C 1.37879 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00049 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00120 * 0.27501 * 7 2 1 10 10 C 1.52994 * 109.47398 * 179.72884 * 9 7 2 11 11 N 1.46904 * 109.47328 * 180.02562 * 10 9 7 12 12 C 1.46957 * 110.99693 * 293.79817 * 11 10 9 13 13 C 1.53054 * 109.36250 * 176.81115 * 12 11 10 14 14 N 1.46956 * 109.36439 * 58.40046 * 13 12 11 15 15 C 1.46895 * 110.99901 * 176.81326 * 14 13 12 16 16 C 1.50706 * 109.47294 * 313.79641 * 15 14 13 17 17 C 1.32569 * 119.99818 * 127.27075 * 16 15 14 18 18 C 1.47814 * 120.00309 * 8.14392 * 17 16 15 19 19 C 1.39534 * 120.14009 * 218.15186 * 18 17 16 20 20 C 1.37977 * 119.85152 * 179.67689 * 19 18 17 21 21 C 1.38352 * 120.14135 * 0.61693 * 20 19 18 22 22 C 1.38338 * 120.28381 * 359.68002 * 21 20 19 23 23 C 1.37976 * 120.14755 * 359.97438 * 22 21 20 24 24 C 1.46959 * 110.87859 * 300.67957 * 14 13 12 25 25 C 1.46956 * 111.00088 * 169.99805 * 11 10 9 26 26 H 0.97004 * 119.99458 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47091 * 299.72667 * 9 7 2 28 28 H 1.08999 * 109.47155 * 59.72320 * 9 7 2 29 29 H 1.09000 * 109.46822 * 299.99947 * 10 9 7 30 30 H 1.08999 * 109.47429 * 59.99603 * 10 9 7 31 31 H 1.09000 * 109.48934 * 296.77321 * 12 11 10 32 32 H 1.08999 * 109.49146 * 56.84740 * 12 11 10 33 33 H 1.09010 * 109.48574 * 298.43218 * 13 12 11 34 34 H 1.09003 * 109.48968 * 178.37099 * 13 12 11 35 35 H 1.09002 * 109.47375 * 73.79810 * 15 14 13 36 36 H 1.08997 * 109.47149 * 193.80135 * 15 14 13 37 37 H 1.07993 * 120.00039 * 307.28046 * 16 15 14 38 38 H 1.07997 * 119.99882 * 188.14114 * 17 16 15 39 39 H 1.07993 * 120.07403 * 359.97438 * 19 18 17 40 40 H 1.07999 * 119.93046 * 180.32103 * 20 19 18 41 41 H 1.08001 * 119.85247 * 179.69790 * 21 20 19 42 42 H 1.08004 * 119.92815 * 180.02562 * 22 21 20 43 43 H 1.07993 * 120.07662 * 180.02562 * 23 22 21 44 44 H 1.08998 * 109.48877 * 299.35156 * 24 14 13 45 45 H 1.09001 * 109.48368 * 179.29098 * 24 14 13 46 46 H 1.08998 * 109.48889 * 303.15303 * 25 11 10 47 47 H 1.09004 * 109.48990 * 63.20026 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0074 10 6 2.2452 -3.6621 -0.0134 11 7 1.5106 -4.9343 -0.0207 12 6 0.7674 -5.1204 1.2334 13 6 -0.0451 -6.4150 1.1543 14 7 0.8617 -7.5453 0.9101 15 6 0.1272 -8.8174 0.9028 16 6 -0.8089 -8.8638 2.0830 17 6 -2.0940 -9.1329 1.8995 18 6 -2.5766 -9.5632 0.5703 19 6 -3.8110 -9.1186 0.0954 20 6 -4.2527 -9.5186 -1.1490 21 6 -3.4803 -10.3689 -1.9201 22 6 -2.2584 -10.8182 -1.4523 23 6 -1.8020 -10.4199 -0.2127 24 6 1.6049 -7.3591 -0.3439 25 6 2.4175 -6.0646 -0.2648 26 1 -0.4849 0.8401 -0.0004 27 1 0.6243 -2.5616 0.8823 28 1 0.6243 -2.5522 -0.8976 29 1 2.8718 -3.5997 -0.9030 30 1 2.8718 -3.6090 0.8769 31 1 1.4683 -5.1813 2.0659 32 1 0.0938 -4.2770 1.3855 33 1 -0.7649 -6.3434 0.3387 34 1 -0.5747 -6.5700 2.0944 35 1 -0.4471 -8.9001 -0.0199 36 1 0.8335 -9.6452 0.9666 37 1 -0.4329 -8.6778 3.0781 38 1 -2.7883 -9.0376 2.7212 39 1 -4.4172 -8.4589 0.6985 40 1 -5.2056 -9.1711 -1.5200 41 1 -3.8328 -10.6830 -2.8914 42 1 -1.6599 -11.4815 -2.0592 43 1 -0.8477 -10.7710 0.1512 44 1 0.9040 -7.2983 -1.1764 45 1 2.2784 -8.2025 -0.4960 46 1 2.9469 -5.9096 -1.2049 47 1 3.1374 -6.1360 0.5505 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255215043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:32 Heat of formation + Delta-G solvation = 35.139026 kcal Electronic energy + Delta-G solvation = -23871.993243 eV Core-core repulsion = 20632.998119 eV Total energy + Delta-G solvation = -3238.995123 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.70897 -39.92630 -37.47361 -35.53927 -34.62292 -32.16773 -31.94757 -31.63353 -30.47114 -28.48386 -26.31977 -24.90874 -24.61346 -23.36242 -22.98431 -22.06248 -20.70620 -20.05314 -18.61975 -17.67047 -17.05089 -16.62735 -16.52735 -16.16855 -16.09672 -15.90731 -15.48272 -15.33725 -15.26904 -14.66707 -14.42680 -14.25532 -14.14492 -13.94504 -13.49056 -13.30224 -13.24602 -12.91120 -12.75473 -12.67418 -12.45518 -12.23638 -12.12783 -11.98212 -11.84184 -11.75897 -11.56825 -11.28685 -11.17310 -10.67857 -10.53678 -9.87017 -9.38738 -9.20923 -9.03403 -8.20150 -6.31844 0.10977 0.50160 1.39772 1.41362 1.43356 1.51216 2.40114 2.89736 3.00756 3.06206 3.13001 3.78774 3.92680 3.94807 4.05820 4.10963 4.11611 4.23585 4.25113 4.32880 4.42132 4.46913 4.52478 4.58253 4.59708 4.63302 4.67613 4.76686 4.83273 4.89276 4.92852 4.99787 5.05118 5.07408 5.11155 5.17501 5.43182 5.43797 5.46231 5.62088 5.64439 5.68088 5.75119 5.78971 6.00155 6.04835 6.11476 6.17167 6.30867 6.33221 6.84887 7.37158 8.91856 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.019717 B = 0.002774 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.755568 B =10091.179951 C =10640.766953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.038 3.962 10 C 0.081 3.919 11 N -0.554 5.554 12 C 0.060 3.940 13 C 0.075 3.925 14 N -0.539 5.539 15 C 0.071 3.929 16 C -0.136 4.136 17 C -0.126 4.126 18 C -0.073 4.073 19 C -0.127 4.127 20 C -0.132 4.132 21 C -0.130 4.130 22 C -0.131 4.131 23 C -0.118 4.118 24 C 0.066 3.934 25 C 0.056 3.944 26 H 0.264 0.736 27 H -0.007 1.007 28 H -0.011 1.011 29 H 0.065 0.935 30 H 0.019 0.981 31 H 0.034 0.966 32 H 0.059 0.941 33 H 0.021 0.979 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.098 0.902 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.128 0.872 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.135 0.865 44 H 0.030 0.970 45 H 0.104 0.896 46 H 0.084 0.916 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.855 -24.945 0.562 25.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.079 0.921 9 C 0.001 3.999 10 C -0.047 4.047 11 N -0.279 5.279 12 C -0.068 4.068 13 C -0.053 4.053 14 N -0.264 5.264 15 C -0.055 4.055 16 C -0.154 4.154 17 C -0.145 4.145 18 C -0.073 4.073 19 C -0.145 4.145 20 C -0.150 4.150 21 C -0.148 4.148 22 C -0.149 4.149 23 C -0.136 4.136 24 C -0.062 4.062 25 C -0.072 4.072 26 H 0.073 0.927 27 H 0.011 0.989 28 H 0.008 0.992 29 H 0.083 0.917 30 H 0.038 0.962 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.116 0.884 37 H 0.147 0.853 38 H 0.153 0.847 39 H 0.146 0.854 40 H 0.154 0.846 41 H 0.157 0.843 42 H 0.160 0.840 43 H 0.153 0.847 44 H 0.048 0.952 45 H 0.122 0.878 46 H 0.103 0.897 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.983 -24.848 0.549 25.171 hybrid contribution 0.004 1.292 0.049 1.293 sum -3.979 -23.555 0.598 23.896 Atomic orbital electron populations 1.70110 1.07856 1.27848 1.51329 1.25981 0.95768 1.03373 0.94575 0.85471 0.78249 0.77913 0.79225 1.19094 1.20768 1.19116 1.21600 0.93533 0.92265 1.51073 0.92141 1.18892 0.94156 0.91987 0.94857 1.21952 0.95345 0.88340 0.99029 1.62182 1.28362 1.02560 1.34798 1.22095 0.97070 0.97359 0.90293 1.21988 0.93399 0.89222 1.00716 1.62271 1.27321 1.02061 1.34740 1.21678 0.95557 0.91704 0.96549 1.23242 0.93889 0.98793 0.99509 1.21835 0.95960 1.01358 0.95340 1.19306 0.94905 0.98027 0.95069 1.21516 0.95991 1.00033 0.96920 1.21393 1.00833 0.98198 0.94603 1.21531 0.94990 0.97671 1.00572 1.21407 0.96717 1.00473 0.96268 1.21599 0.99644 0.97507 0.94853 1.22132 0.96981 0.97340 0.89786 1.22212 0.94022 0.89831 1.01140 0.92745 0.98868 0.99231 0.91687 0.96245 0.94826 0.92285 0.96052 0.89114 0.93143 0.88425 0.85253 0.84743 0.85373 0.84599 0.84278 0.84050 0.84719 0.95184 0.87828 0.89750 0.94437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.91 13.29 21.45 0.28 -57.63 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.55 -31.93 9.11 25.60 0.23 -31.70 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.04 2.13 4.91 29.85 0.15 2.28 16 10 C 0.08 3.58 4.90 86.30 0.42 4.00 16 11 N -0.55 -21.32 4.71 -895.72 -4.22 -25.54 16 12 C 0.06 2.21 5.41 86.31 0.47 2.67 16 13 C 0.08 2.24 5.19 86.31 0.45 2.69 16 14 N -0.54 -13.66 4.85 -900.26 -4.37 -18.03 16 15 C 0.07 1.42 4.05 85.56 0.35 1.76 16 16 C -0.14 -2.52 7.53 24.54 0.18 -2.33 16 17 C -0.13 -2.30 9.79 23.65 0.23 -2.07 16 18 C -0.07 -1.46 5.14 -20.12 -0.10 -1.56 16 19 C -0.13 -2.52 9.79 22.52 0.22 -2.30 16 20 C -0.13 -2.40 10.03 22.24 0.22 -2.17 16 21 C -0.13 -2.16 10.04 22.32 0.22 -1.94 16 22 C -0.13 -2.16 10.03 22.23 0.22 -1.94 16 23 C -0.12 -2.13 7.32 22.52 0.16 -1.97 16 24 C 0.07 1.65 5.58 86.31 0.48 2.13 16 25 C 0.06 1.68 5.61 86.31 0.48 2.16 16 26 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 27 H -0.01 -0.41 6.49 -2.39 -0.02 -0.43 16 28 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 29 H 0.06 2.79 8.03 -2.39 -0.02 2.77 16 30 H 0.02 0.86 8.12 -2.39 -0.02 0.84 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 2.48 6.34 -2.39 -0.02 2.47 16 33 H 0.02 0.71 8.14 -2.38 -0.02 0.70 16 34 H 0.09 2.44 6.62 -2.39 -0.02 2.42 16 35 H 0.05 1.10 4.78 -2.39 -0.01 1.08 16 36 H 0.10 1.60 8.00 -2.39 -0.02 1.58 16 37 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.13 2.06 8.06 -2.91 -0.02 2.03 16 39 H 0.13 2.27 8.06 -2.91 -0.02 2.24 16 40 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 41 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 42 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 43 H 0.14 2.05 6.38 -2.91 -0.02 2.03 16 44 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.08 2.36 8.07 -2.39 -0.02 2.34 16 47 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -68.00 369.66 -0.50 -68.50 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.92 Total: 15.53 kcal Atomic # 6 Polarization: -34.61 SS G_CDS: 4.86 Total: -29.75 kcal Atomic # 7 Polarization: -92.89 SS G_CDS: -8.30 Total: -101.19 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -68.00 -0.50 -68.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255215043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.642 kcal (2) G-P(sol) polarization free energy of solvation -68.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds