Wall clock time and date at job start Tue Mar 31 2020 08:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86797 * 120.00012 * 2 1 4 4 H 1.48502 * 109.47102 * 240.00279 * 3 2 1 5 5 H 1.48492 * 109.47385 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46791 * 120.00764 * 3 2 1 7 7 C 1.39950 * 119.99698 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99988 * 164.55100 * 7 2 1 9 9 C 1.41386 * 119.99957 * 344.81905 * 7 2 1 10 10 C 1.40723 * 120.24332 * 154.66147 * 9 7 2 11 11 C 1.37617 * 119.74544 * 179.74138 * 10 9 7 12 12 C 1.38645 * 120.24672 * 0.53586 * 11 10 9 13 13 C 1.50698 * 119.74764 * 179.74034 * 12 11 10 14 14 N 1.46899 * 109.47039 * 269.97582 * 13 12 11 15 15 C 1.46963 * 111.00018 * 293.79996 * 14 13 12 16 16 C 1.53052 * 109.36595 * 176.81044 * 15 14 13 17 17 N 1.46958 * 109.36424 * 58.40185 * 16 15 14 18 18 C 1.46899 * 111.00141 * 176.81215 * 17 16 15 19 19 C 1.53776 * 113.61409 * 289.72400 * 18 17 16 20 20 C 1.53958 * 87.01899 * 220.04801 * 19 18 17 21 21 C 1.53775 * 113.61221 * 192.11514 * 18 17 16 22 22 C 1.46963 * 110.87926 * 300.68039 * 17 16 15 23 23 C 1.46958 * 111.00141 * 170.00076 * 14 13 12 24 24 C 1.38635 * 120.49938 * 359.71638 * 12 11 10 25 25 C 1.37617 * 120.25294 * 0.02562 * 24 12 11 26 26 H 0.97002 * 120.00065 * 359.97438 * 1 2 3 27 27 H 1.07994 * 120.12723 * 359.97148 * 10 9 7 28 28 H 1.07992 * 119.87774 * 180.27400 * 11 10 9 29 29 H 1.09001 * 109.47296 * 29.97393 * 13 12 11 30 30 H 1.09005 * 109.47018 * 149.97722 * 13 12 11 31 31 H 1.08998 * 109.48990 * 296.78250 * 15 14 13 32 32 H 1.08998 * 109.48391 * 56.84469 * 15 14 13 33 33 H 1.09003 * 109.48536 * 298.43950 * 16 15 14 34 34 H 1.08991 * 109.50892 * 178.37909 * 16 15 14 35 35 H 1.08998 * 112.84817 * 60.91861 * 18 17 16 36 36 H 1.09004 * 113.61500 * 334.56657 * 19 18 17 37 37 H 1.08995 * 113.61619 * 105.46945 * 19 18 17 38 38 H 1.08997 * 113.53754 * 270.80838 * 20 19 18 39 39 H 1.09003 * 113.66442 * 139.93481 * 20 19 18 40 40 H 1.09007 * 113.61461 * 254.53116 * 21 18 17 41 41 H 1.09000 * 113.61733 * 25.43443 * 21 18 17 42 42 H 1.08998 * 109.48990 * 299.34857 * 22 17 16 43 43 H 1.09005 * 109.50475 * 179.29731 * 22 17 16 44 44 H 1.08998 * 109.48646 * 303.15790 * 23 14 13 45 45 H 1.09009 * 109.48636 * 63.22189 * 23 14 13 46 46 H 1.08005 * 119.87371 * 179.97438 * 24 12 11 47 47 H 1.07993 * 120.13223 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0961 1.6962 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0586 -1.2289 -0.2497 9 6 1.3379 -2.4152 0.3196 10 6 1.8189 -3.6452 -0.1662 11 6 1.1618 -4.8106 0.1561 12 6 0.0237 -4.7749 0.9470 13 6 -0.6904 -6.0574 1.2882 14 7 -1.7065 -6.3391 0.2655 15 6 -2.7747 -5.3301 0.2924 16 6 -3.7687 -5.6131 -0.8365 17 7 -4.3210 -6.9650 -0.6719 18 6 -5.3371 -7.2467 -1.6947 19 6 -6.6385 -6.4495 -1.5060 20 6 -7.3881 -7.7319 -1.9109 21 6 -6.1615 -8.5135 -1.4113 22 6 -3.2528 -7.9740 -0.6988 23 6 -2.2588 -7.6910 0.4300 24 6 -0.4622 -3.5683 1.4267 25 6 0.1818 -2.3910 1.1215 26 1 -0.4850 0.8401 0.0004 27 1 2.7024 -3.6748 -0.7865 28 1 1.5317 -5.7562 -0.2119 29 1 0.0287 -6.8759 1.3211 30 1 -1.1719 -5.9574 2.2610 31 1 -3.2913 -5.3729 1.2512 32 1 -2.3421 -4.3389 0.1560 33 1 -3.2578 -5.5434 -1.7968 34 1 -4.5773 -4.8832 -0.8009 35 1 -4.9406 -7.2016 -2.7090 36 1 -6.8187 -6.1455 -0.4748 37 1 -6.7561 -5.6312 -2.2163 38 1 -7.5536 -7.8187 -2.9847 39 1 -8.2900 -7.9145 -1.3265 40 1 -5.8947 -9.3590 -2.0453 41 1 -6.2112 -8.7748 -0.3543 42 1 -2.7361 -7.9311 -1.6576 43 1 -3.6850 -8.9653 -0.5627 44 1 -1.4501 -8.4209 0.3941 45 1 -2.7696 -7.7606 1.3905 46 1 -1.3499 -3.5522 2.0417 47 1 -0.1986 -1.4522 1.4959 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343549700.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:42 Heat of formation + Delta-G solvation = 31.295321 kcal Electronic energy + Delta-G solvation = -24250.462176 eV Core-core repulsion = 21011.300377 eV Total energy + Delta-G solvation = -3239.161799 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.81853 -39.67681 -38.50229 -35.96448 -34.87266 -32.21201 -31.77467 -31.12080 -29.13778 -27.02666 -26.64411 -24.97030 -24.21052 -23.72154 -22.76368 -21.54991 -20.71461 -20.25304 -19.20124 -17.67675 -17.18691 -16.46174 -16.28250 -16.04163 -15.88947 -15.80529 -15.63092 -15.19603 -15.08213 -14.59834 -14.17281 -13.85563 -13.80614 -13.43086 -13.29706 -13.24235 -13.02657 -12.75484 -12.73342 -12.45447 -12.44582 -12.22919 -12.18546 -12.14481 -11.83003 -11.52982 -11.37911 -11.26255 -11.12667 -11.03489 -10.99882 -9.40948 -9.34392 -9.22430 -9.06628 -8.59682 -6.32259 0.96215 1.18263 1.37319 1.48572 1.52731 2.21081 2.68562 2.92940 3.16488 3.62248 3.79671 3.81161 3.94540 3.96294 4.05445 4.08855 4.22442 4.32719 4.41265 4.46707 4.49811 4.55047 4.64905 4.67293 4.69067 4.80434 4.84272 4.87037 4.93757 4.94889 5.03329 5.06220 5.06336 5.07017 5.11744 5.17898 5.35979 5.40322 5.50272 5.50567 5.73144 5.96305 6.00776 6.08115 6.12642 6.21721 6.31389 6.35083 6.42254 6.72999 6.96674 7.06648 8.35690 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.021629 B = 0.003089 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.248783 B = 9061.149140 C = 9970.361802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.033 3.967 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.503 4.503 8 H 0.073 0.927 9 C 0.078 3.922 10 C -0.244 4.244 11 C -0.074 4.074 12 C -0.192 4.192 13 C 0.126 3.874 14 N -0.546 5.546 15 C 0.065 3.935 16 C 0.068 3.932 17 N -0.529 5.529 18 C 0.043 3.957 19 C -0.131 4.131 20 C -0.132 4.132 21 C -0.120 4.120 22 C 0.063 3.937 23 C 0.057 3.943 24 C -0.095 4.095 25 C -0.187 4.187 26 H 0.286 0.714 27 H 0.093 0.907 28 H 0.113 0.887 29 H 0.083 0.917 30 H 0.030 0.970 31 H 0.033 0.967 32 H 0.061 0.939 33 H 0.022 0.978 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.028 0.972 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.038 0.962 46 H 0.098 0.902 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.047 -13.891 -1.317 18.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.181 4.181 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.533 4.533 8 H 0.091 0.909 9 C 0.076 3.924 10 C -0.264 4.264 11 C -0.092 4.092 12 C -0.193 4.193 13 C 0.000 4.000 14 N -0.271 5.271 15 C -0.063 4.063 16 C -0.060 4.060 17 N -0.254 5.254 18 C -0.065 4.065 19 C -0.169 4.169 20 C -0.170 4.170 21 C -0.157 4.157 22 C -0.065 4.065 23 C -0.070 4.070 24 C -0.114 4.114 25 C -0.207 4.207 26 H 0.097 0.903 27 H 0.111 0.889 28 H 0.131 0.869 29 H 0.102 0.898 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.046 0.954 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.056 0.944 46 H 0.116 0.884 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.260 -13.759 -1.330 18.477 hybrid contribution 0.608 1.236 -0.159 1.387 sum -11.652 -12.523 -1.489 17.170 Atomic orbital electron populations 1.69869 1.08892 1.30347 1.36321 1.26741 0.95555 1.04429 0.91344 0.85257 0.78752 0.75721 0.79981 1.18488 1.19156 1.18512 1.19809 0.97384 0.92336 1.43731 0.90922 1.17958 0.92195 0.93024 0.89240 1.21177 1.04072 0.93474 1.07644 1.20621 0.95160 0.96591 0.96863 1.19276 0.99169 0.93872 1.07013 1.20657 0.93061 0.94884 0.91441 1.62191 1.12968 1.02574 1.49325 1.22019 0.91131 0.95941 0.97239 1.21961 0.96276 0.91322 0.96472 1.62502 1.13440 1.01770 1.47726 1.23294 0.91132 0.99242 0.92842 1.22988 0.94627 0.97311 1.01936 1.22731 0.97294 0.95310 1.01657 1.22906 0.95209 0.95525 1.02090 1.22103 0.91194 0.96070 0.97145 1.22217 0.97200 0.90117 0.97498 1.20714 0.98199 0.92704 0.99737 1.21284 0.99758 0.96971 1.02668 0.90304 0.88856 0.86943 0.89843 0.95148 0.94888 0.92102 0.95938 0.90156 0.92631 0.90007 0.91844 0.89449 0.90202 0.90804 0.89528 0.95361 0.88422 0.89147 0.94379 0.88430 0.88148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.43 10.84 21.83 0.24 -44.19 16 2 C 0.03 1.73 5.19 85.26 0.44 2.18 16 3 Si 0.98 39.23 29.59 68.60 2.03 41.26 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 6 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 7 C -0.50 -28.01 9.06 23.46 0.21 -27.80 16 8 H 0.07 3.91 7.89 -2.91 -0.02 3.88 16 9 C 0.08 4.35 5.58 -21.29 -0.12 4.24 16 10 C -0.24 -12.41 9.80 22.73 0.22 -12.18 16 11 C -0.07 -3.30 9.67 22.22 0.21 -3.08 16 12 C -0.19 -8.17 4.92 -19.67 -0.10 -8.27 16 13 C 0.13 4.27 5.11 85.56 0.44 4.70 16 14 N -0.55 -17.53 4.70 -900.25 -4.23 -21.76 16 15 C 0.07 2.17 5.24 86.31 0.45 2.62 16 16 C 0.07 1.98 5.53 86.31 0.48 2.46 16 17 N -0.53 -12.87 4.65 -867.40 -4.03 -16.90 16 18 C 0.04 0.87 3.16 45.44 0.14 1.01 16 19 C -0.13 -2.37 7.14 31.18 0.22 -2.15 16 20 C -0.13 -1.83 8.09 31.18 0.25 -1.58 16 21 C -0.12 -1.85 7.03 31.12 0.22 -1.63 16 22 C 0.06 1.44 5.52 86.31 0.48 1.91 16 23 C 0.06 1.43 5.61 86.31 0.48 1.92 16 24 C -0.09 -4.43 7.88 22.22 0.18 -4.26 16 25 C -0.19 -10.10 8.69 22.73 0.20 -9.90 16 26 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 27 H 0.09 4.53 8.06 -2.91 -0.02 4.50 16 28 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 29 H 0.08 2.52 7.97 -2.39 -0.02 2.50 16 30 H 0.03 1.00 8.06 -2.38 -0.02 0.98 16 31 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 2.43 5.94 -2.39 -0.01 2.41 16 33 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 2.22 7.57 -2.39 -0.02 2.20 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.10 1.78 7.50 -2.38 -0.02 1.76 16 44 H 0.09 1.97 8.07 -2.39 -0.02 1.95 16 45 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 46 H 0.10 4.18 7.98 -2.91 -0.02 4.15 16 47 H 0.10 5.69 6.10 -2.91 -0.02 5.68 16 Total: -1.00 -59.76 365.36 -0.67 -60.42 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: 0.92 Total: 30.98 kcal Atomic # 6 Polarization: -54.23 SS G_CDS: 4.41 Total: -49.81 kcal Atomic # 7 Polarization: -74.83 SS G_CDS: -8.03 Total: -82.86 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -59.76 -0.67 -60.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343549700.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.719 kcal (2) G-P(sol) polarization free energy of solvation -59.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds