Wall clock time and date at job start Tue Mar 31 2020 07:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00231 * 2 1 4 4 C 1.53002 * 109.47464 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.46751 * 65.00144 * 4 3 2 6 6 C 1.42902 * 113.99739 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47056 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.47388 * 180.02562 * 7 6 5 9 9 N 1.46497 * 109.47373 * 180.02562 * 8 7 6 10 10 C 1.34770 * 120.00007 * 180.02562 * 9 8 7 11 11 O 1.21588 * 120.00056 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00458 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00453 * 180.27639 * 12 10 9 14 14 C 1.52999 * 109.47238 * 178.20984 * 13 12 10 15 15 C 1.50706 * 115.55242 * 65.12157 * 14 13 12 16 16 H 1.08004 * 119.99710 * 265.41242 * 15 14 13 17 17 C 1.37870 * 119.99833 * 85.41175 * 15 14 13 18 18 N 1.31511 * 120.00288 * 353.55860 * 17 15 14 19 19 Si 1.86798 * 120.00127 * 173.55930 * 17 15 14 20 20 H 1.48502 * 109.46883 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47175 * 119.99719 * 19 17 15 22 22 H 1.48501 * 109.47364 * 240.00200 * 19 17 15 23 23 C 1.53004 * 117.49443 * 279.45489 * 14 13 12 24 24 C 1.53001 * 117.50051 * 210.79740 * 14 13 12 25 25 H 1.08993 * 109.47669 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47082 * 299.99876 * 1 2 3 27 27 H 1.09000 * 109.46938 * 59.99688 * 1 2 3 28 28 H 1.09003 * 109.47061 * 60.00238 * 3 2 1 29 29 H 1.09005 * 109.47437 * 300.00283 * 3 2 1 30 30 H 1.09002 * 109.47104 * 305.00405 * 4 3 2 31 31 H 1.08993 * 109.47660 * 185.00179 * 4 3 2 32 32 H 1.09001 * 109.47142 * 60.00060 * 6 5 4 33 33 H 1.08994 * 109.47341 * 299.99960 * 6 5 4 34 34 H 1.09001 * 109.47011 * 60.00084 * 7 6 5 35 35 H 1.09005 * 109.47382 * 299.99804 * 7 6 5 36 36 H 1.09001 * 109.47005 * 60.00045 * 8 7 6 37 37 H 1.08998 * 109.46862 * 300.00850 * 8 7 6 38 38 H 0.97005 * 119.99716 * 359.97438 * 9 8 7 39 39 H 0.97005 * 119.99265 * 359.97438 * 12 10 9 40 40 H 1.09001 * 109.46765 * 298.20448 * 13 12 10 41 41 H 1.08998 * 109.47048 * 58.20610 * 13 12 10 42 42 H 0.97003 * 120.00760 * 185.05299 * 18 17 15 43 43 H 1.08989 * 117.50087 * 359.97438 * 23 14 13 44 44 H 1.09005 * 117.49510 * 145.02428 * 23 14 13 45 45 H 1.09001 * 117.49885 * 214.98054 * 24 14 13 46 46 H 1.08999 * 117.49630 * 359.96996 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9658 0.5792 -1.2202 6 6 5.3821 0.4187 -1.3216 7 6 5.7266 -0.2360 -2.6609 8 6 7.2430 -0.4085 -2.7693 9 7 7.5728 -1.0348 -4.0519 10 6 8.8585 -1.2865 -4.3680 11 8 9.7447 -0.9934 -3.5889 12 7 9.1620 -1.8632 -5.5478 13 6 10.5591 -2.1423 -5.8889 14 6 10.6229 -2.8339 -7.2521 15 6 10.1643 -2.0045 -8.4239 16 1 9.1444 -2.0783 -8.7714 17 6 11.0468 -1.1517 -9.0522 18 7 12.2496 -0.9661 -8.5539 19 14 10.5340 -0.2599 -10.6114 20 1 9.1412 -0.6372 -10.9621 21 1 10.6082 1.2066 -10.3900 22 1 11.4447 -0.6396 -11.7212 23 6 10.3385 -4.3367 -7.2958 24 6 11.7669 -3.8217 -7.4904 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8508 0.5684 0.8427 31 1 3.9785 2.1764 0.0902 32 1 5.7354 -0.2136 -0.5070 33 1 5.8638 1.3944 -1.2592 34 1 5.3732 0.3959 -3.4757 35 1 5.2449 -1.2119 -2.7228 36 1 7.5959 -1.0407 -1.9544 37 1 7.7250 0.5671 -2.7070 38 1 6.8657 -1.2690 -4.6733 39 1 8.4549 -2.0974 -6.1692 40 1 11.1170 -1.2068 -5.9296 41 1 10.9952 -2.7927 -5.1307 42 1 12.8443 -0.3118 -8.9528 43 1 10.1064 -4.8325 -6.3534 44 1 9.8202 -4.7254 -8.1724 45 1 12.1876 -3.8718 -8.4947 46 1 12.4742 -3.9784 -6.6760 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430536271.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:39 Heat of formation + Delta-G solvation = -108.124741 kcal Electronic energy + Delta-G solvation = -23605.452892 eV Core-core repulsion = 19917.103371 eV Total energy + Delta-G solvation = -3688.349521 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.40033 -38.81353 -37.63933 -36.78198 -35.15423 -33.22423 -32.01754 -31.87794 -30.12977 -26.78386 -26.42718 -25.43093 -24.33905 -22.94083 -21.70125 -21.18156 -20.19923 -19.34939 -17.62479 -17.35775 -17.17994 -16.29999 -16.15891 -15.82285 -15.72103 -15.26242 -15.12153 -14.65137 -14.14722 -14.13126 -13.84712 -13.62805 -13.22804 -12.92007 -12.67256 -12.50147 -12.00140 -11.88136 -11.77949 -11.59284 -11.51879 -11.27855 -11.13129 -11.00858 -10.88561 -10.50700 -10.24666 -10.09969 -9.88919 -9.71836 -9.48886 -8.94436 -8.80744 -8.48031 -8.22788 -7.93334 -6.05802 -4.14191 3.02803 3.26058 3.34986 3.36065 3.37056 3.53581 3.84109 4.36710 4.57957 4.72386 4.76208 4.78468 4.84963 4.91997 4.96408 5.03079 5.07065 5.14643 5.22440 5.26933 5.30420 5.33244 5.39789 5.40854 5.61833 5.99545 6.01207 6.07151 6.37219 6.50120 6.62945 6.71087 6.72205 6.78880 6.88767 6.92832 7.11434 7.36956 7.44493 7.50030 7.63601 7.83543 8.36452 8.70193 8.86738 9.24441 9.52353 11.02089 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.020507 B = 0.002104 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.082210 B =13305.945402 C =13743.347041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.062 3.938 4 C 0.064 3.936 5 O -0.381 6.381 6 C 0.066 3.934 7 C -0.130 4.130 8 C 0.145 3.855 9 N -0.754 5.754 10 C 0.698 3.302 11 O -0.605 6.605 12 N -0.720 5.720 13 C 0.182 3.818 14 C 0.026 3.974 15 C -0.498 4.498 16 H 0.060 0.940 17 C 0.073 3.927 18 N -0.874 5.874 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.210 4.210 24 C -0.147 4.147 25 H 0.086 0.914 26 H 0.039 0.961 27 H 0.042 0.958 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.395 0.605 39 H 0.396 0.604 40 H 0.070 0.930 41 H 0.034 0.966 42 H 0.261 0.739 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.602 3.573 15.543 25.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.014 4.014 4 C -0.013 4.013 5 O -0.300 6.300 6 C -0.011 4.011 7 C -0.168 4.168 8 C 0.020 3.980 9 N -0.411 5.411 10 C 0.398 3.602 11 O -0.484 6.484 12 N -0.373 5.373 13 C 0.059 3.941 14 C 0.025 3.975 15 C -0.536 4.536 16 H 0.078 0.922 17 C -0.132 4.132 18 N -0.510 5.510 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.248 4.248 24 C -0.186 4.186 25 H 0.105 0.895 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.228 0.772 39 H 0.229 0.771 40 H 0.088 0.912 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.545 3.673 16.037 24.791 hybrid contribution -0.846 0.729 -1.226 1.658 sum -19.391 4.402 14.810 24.794 Atomic orbital electron populations 1.22750 0.81042 1.02934 0.99857 1.87970 1.19615 1.27301 1.95367 1.22575 0.92461 0.85533 1.00875 1.22504 0.93266 0.97644 0.87910 1.87928 1.22174 1.82084 1.37830 1.22349 0.81356 0.99676 0.97696 1.21668 0.95416 1.02408 0.97259 1.20880 0.93196 0.98242 0.85668 1.45026 1.06876 1.68233 1.21011 1.16021 0.82420 0.78986 0.82796 1.90868 1.46546 1.59617 1.51404 1.45142 1.10765 1.64062 1.17285 1.20840 0.78921 0.99958 0.94399 1.19072 0.99083 0.86353 0.92979 1.20365 0.96660 1.24165 1.12379 0.92179 1.24994 0.94675 0.96454 0.97029 1.69985 1.07255 1.33228 1.40540 0.86573 0.78654 0.79386 0.83576 1.19755 1.21077 1.20984 1.23018 1.00963 1.00591 1.00187 1.22490 0.89920 1.05287 1.00873 0.89524 0.94214 0.93974 0.91855 0.92332 0.92357 0.91686 0.92844 0.92909 0.90396 0.90353 0.91820 0.91782 0.77192 0.77067 0.91213 0.94746 0.92915 0.91629 0.90396 0.89826 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.68 10.67 -40.08 -0.43 -4.11 16 3 C 0.06 0.45 6.32 37.16 0.23 0.68 16 4 C 0.06 0.49 6.32 37.16 0.23 0.73 16 5 O -0.38 -4.00 10.31 -40.08 -0.41 -4.42 16 6 C 0.07 0.60 5.94 37.16 0.22 0.82 16 7 C -0.13 -1.26 5.70 -26.73 -0.15 -1.41 16 8 C 0.15 1.80 5.67 -4.04 -0.02 1.77 16 9 N -0.75 -10.96 5.56 -65.23 -0.36 -11.32 16 10 C 0.70 13.71 8.57 -86.92 -0.74 12.96 16 11 O -0.60 -14.26 16.34 5.29 0.09 -14.17 16 12 N -0.72 -14.40 5.48 -65.23 -0.36 -14.75 16 13 C 0.18 4.25 5.50 -4.04 -0.02 4.23 16 14 C 0.03 0.62 1.38 -155.66 -0.21 0.40 16 15 C -0.50 -12.87 8.63 -34.44 -0.30 -13.17 16 16 H 0.06 1.53 7.82 -52.48 -0.41 1.11 16 17 C 0.07 1.94 5.39 -17.82 -0.10 1.84 16 18 N -0.87 -24.46 12.91 55.43 0.72 -23.75 16 19 Si 0.89 20.69 29.55 -169.99 -5.02 15.67 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 C -0.21 -4.40 9.96 -26.69 -0.27 -4.67 16 24 C -0.15 -3.40 9.42 -26.69 -0.25 -3.65 16 25 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.39 4.67 8.49 -40.82 -0.35 4.33 16 39 H 0.40 7.14 8.38 -40.82 -0.34 6.80 16 40 H 0.07 1.87 8.14 -51.93 -0.42 1.45 16 41 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 42 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 43 H 0.07 1.26 8.14 -51.94 -0.42 0.84 16 44 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 45 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 46 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 389.59 15.07 5.87 5.87 Total: -1.00 -32.67 389.59 -8.44 -41.11 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -8.26 Total: 8.04 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -0.26 Total: 1.84 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 0.00 Total: -49.82 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.75 Total: -22.70 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.67 -8.44 -41.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430536271.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.019 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds