Wall clock time and date at job start Tue Mar 31 2020 07:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00231 * 2 1 4 4 C 1.53002 * 109.47464 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.46751 * 65.00144 * 4 3 2 6 6 C 1.42902 * 113.99739 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47056 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.47388 * 180.02562 * 7 6 5 9 9 N 1.46497 * 109.47373 * 180.02562 * 8 7 6 10 10 C 1.34770 * 120.00007 * 180.02562 * 9 8 7 11 11 O 1.21588 * 120.00056 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00458 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00453 * 180.27639 * 12 10 9 14 14 C 1.52999 * 109.47238 * 178.20984 * 13 12 10 15 15 C 1.50706 * 115.55242 * 65.12157 * 14 13 12 16 16 H 1.08004 * 119.99710 * 265.41242 * 15 14 13 17 17 C 1.37870 * 119.99833 * 85.41175 * 15 14 13 18 18 N 1.31511 * 120.00288 * 353.55860 * 17 15 14 19 19 Si 1.86798 * 120.00127 * 173.55930 * 17 15 14 20 20 H 1.48502 * 109.46883 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47175 * 119.99719 * 19 17 15 22 22 H 1.48501 * 109.47364 * 240.00200 * 19 17 15 23 23 C 1.53004 * 117.49443 * 279.45489 * 14 13 12 24 24 C 1.53001 * 117.50051 * 210.79740 * 14 13 12 25 25 H 1.08993 * 109.47669 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47082 * 299.99876 * 1 2 3 27 27 H 1.09000 * 109.46938 * 59.99688 * 1 2 3 28 28 H 1.09003 * 109.47061 * 60.00238 * 3 2 1 29 29 H 1.09005 * 109.47437 * 300.00283 * 3 2 1 30 30 H 1.09002 * 109.47104 * 305.00405 * 4 3 2 31 31 H 1.08993 * 109.47660 * 185.00179 * 4 3 2 32 32 H 1.09001 * 109.47142 * 60.00060 * 6 5 4 33 33 H 1.08994 * 109.47341 * 299.99960 * 6 5 4 34 34 H 1.09001 * 109.47011 * 60.00084 * 7 6 5 35 35 H 1.09005 * 109.47382 * 299.99804 * 7 6 5 36 36 H 1.09001 * 109.47005 * 60.00045 * 8 7 6 37 37 H 1.08998 * 109.46862 * 300.00850 * 8 7 6 38 38 H 0.97005 * 119.99716 * 359.97438 * 9 8 7 39 39 H 0.97005 * 119.99265 * 359.97438 * 12 10 9 40 40 H 1.09001 * 109.46765 * 298.20448 * 13 12 10 41 41 H 1.08998 * 109.47048 * 58.20610 * 13 12 10 42 42 H 0.97003 * 120.00760 * 185.05299 * 18 17 15 43 43 H 1.08989 * 117.50087 * 359.97438 * 23 14 13 44 44 H 1.09005 * 117.49510 * 145.02428 * 23 14 13 45 45 H 1.09001 * 117.49885 * 214.98054 * 24 14 13 46 46 H 1.08999 * 117.49630 * 359.96996 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9658 0.5792 -1.2202 6 6 5.3821 0.4187 -1.3216 7 6 5.7266 -0.2360 -2.6609 8 6 7.2430 -0.4085 -2.7693 9 7 7.5728 -1.0348 -4.0519 10 6 8.8585 -1.2865 -4.3680 11 8 9.7447 -0.9934 -3.5889 12 7 9.1620 -1.8632 -5.5478 13 6 10.5591 -2.1423 -5.8889 14 6 10.6229 -2.8339 -7.2521 15 6 10.1643 -2.0045 -8.4239 16 1 9.1444 -2.0783 -8.7714 17 6 11.0468 -1.1517 -9.0522 18 7 12.2496 -0.9661 -8.5539 19 14 10.5340 -0.2599 -10.6114 20 1 9.1412 -0.6372 -10.9621 21 1 10.6082 1.2066 -10.3900 22 1 11.4447 -0.6396 -11.7212 23 6 10.3385 -4.3367 -7.2958 24 6 11.7669 -3.8217 -7.4904 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8508 0.5684 0.8427 31 1 3.9785 2.1764 0.0902 32 1 5.7354 -0.2136 -0.5070 33 1 5.8638 1.3944 -1.2592 34 1 5.3732 0.3959 -3.4757 35 1 5.2449 -1.2119 -2.7228 36 1 7.5959 -1.0407 -1.9544 37 1 7.7250 0.5671 -2.7070 38 1 6.8657 -1.2690 -4.6733 39 1 8.4549 -2.0974 -6.1692 40 1 11.1170 -1.2068 -5.9296 41 1 10.9952 -2.7927 -5.1307 42 1 12.8443 -0.3118 -8.9528 43 1 10.1064 -4.8325 -6.3534 44 1 9.8202 -4.7254 -8.1724 45 1 12.1876 -3.8718 -8.4947 46 1 12.4742 -3.9784 -6.6760 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430536271.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:38 Heat of formation + Delta-G solvation = -131.593963 kcal Electronic energy + Delta-G solvation = -23606.470593 eV Core-core repulsion = 19917.103371 eV Total energy + Delta-G solvation = -3689.367223 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.93441 -39.47024 -38.60484 -38.24299 -36.35724 -34.93345 -33.95608 -32.90897 -30.83162 -28.19726 -27.31600 -27.05551 -25.59154 -23.50907 -22.95952 -22.57763 -21.72933 -21.21356 -19.16880 -18.20032 -17.88554 -17.78237 -17.07321 -16.98428 -16.64720 -16.33611 -16.29405 -16.17761 -15.71887 -15.26560 -15.19968 -14.86443 -14.47756 -14.36019 -13.81167 -13.49907 -13.42327 -13.14662 -12.91680 -12.82801 -12.74193 -12.57167 -12.31790 -12.21733 -12.02316 -12.01152 -11.86699 -11.50053 -11.27122 -10.83789 -10.64121 -10.54696 -10.45345 -10.27553 -10.02734 -9.56608 -8.08069 -6.20956 1.42033 1.45568 1.54927 1.79627 2.25991 2.43678 2.69507 2.88254 3.20015 3.38014 3.65279 3.99142 4.02797 4.07541 4.20995 4.26432 4.27506 4.46029 4.50196 4.52098 4.55544 4.58544 4.60237 4.62998 4.68063 4.70272 4.76431 4.79309 4.87728 5.00817 5.03443 5.13898 5.16024 5.29363 5.54764 5.60985 5.63798 5.73677 5.80810 6.17518 6.18012 6.31307 6.38777 6.86134 7.25702 7.48174 7.70038 8.99691 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.020507 B = 0.002104 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.082210 B =13305.945402 C =13743.347041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.058 3.942 4 C 0.056 3.944 5 O -0.404 6.404 6 C 0.066 3.934 7 C -0.116 4.116 8 C 0.145 3.855 9 N -0.735 5.735 10 C 0.695 3.305 11 O -0.647 6.647 12 N -0.716 5.716 13 C 0.200 3.800 14 C 0.002 3.998 15 C -0.500 4.500 16 H 0.064 0.936 17 C 0.022 3.978 18 N -0.908 5.908 19 Si 0.951 3.049 20 H -0.261 1.261 21 H -0.288 1.288 22 H -0.285 1.285 23 C -0.175 4.175 24 C -0.159 4.159 25 H 0.090 0.910 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.411 0.589 39 H 0.407 0.593 40 H 0.025 0.975 41 H 0.032 0.968 42 H 0.258 0.742 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.064 0.936 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.909 3.510 15.777 27.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.018 4.018 4 C -0.020 4.020 5 O -0.324 6.324 6 C -0.011 4.011 7 C -0.154 4.154 8 C 0.021 3.979 9 N -0.392 5.392 10 C 0.395 3.605 11 O -0.530 6.530 12 N -0.369 5.369 13 C 0.075 3.925 14 C 0.001 3.999 15 C -0.538 4.538 16 H 0.083 0.917 17 C -0.179 4.179 18 N -0.546 5.546 19 Si 0.777 3.223 20 H -0.185 1.185 21 H -0.215 1.215 22 H -0.212 1.212 23 C -0.212 4.212 24 C -0.197 4.197 25 H 0.109 0.891 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.247 0.753 39 H 0.242 0.758 40 H 0.044 0.956 41 H 0.051 0.949 42 H 0.067 0.933 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.083 0.917 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.936 3.602 16.261 26.753 hybrid contribution -0.182 0.747 -1.232 1.452 sum -21.118 4.349 15.029 26.283 Atomic orbital electron populations 1.22898 0.79666 1.03621 1.00856 1.87916 1.21335 1.28778 1.95607 1.22732 0.92081 0.84969 1.02019 1.22732 0.93811 0.98560 0.86888 1.87884 1.22593 1.82626 1.39268 1.22351 0.81201 1.00310 0.97261 1.21512 0.93049 1.02786 0.98020 1.20991 0.95080 0.97515 0.84328 1.44890 1.05396 1.66930 1.21971 1.16191 0.83519 0.78657 0.82162 1.90839 1.48326 1.61250 1.52579 1.44916 1.09789 1.64355 1.17824 1.20387 0.80221 0.97602 0.94299 1.19106 1.00437 0.87831 0.92523 1.20673 0.96699 1.23842 1.12602 0.91742 1.25730 0.94805 0.97609 0.99737 1.70113 1.08361 1.34128 1.41993 0.85615 0.78697 0.77862 0.80076 1.18489 1.21473 1.21160 1.23001 0.98591 0.98000 1.01587 1.22436 0.91073 1.06182 1.00026 0.89112 0.92613 0.93537 0.89400 0.92400 0.92315 0.89613 0.92344 0.91878 0.90044 0.90054 0.92122 0.92481 0.75295 0.75762 0.95606 0.94944 0.93274 0.89337 0.89463 0.91749 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.55 10.67 -144.34 -1.54 -9.09 16 3 C 0.06 0.75 6.32 71.98 0.45 1.21 16 4 C 0.06 0.78 6.32 71.98 0.45 1.23 16 5 O -0.40 -7.89 10.31 -144.34 -1.49 -9.38 16 6 C 0.07 1.09 5.94 71.98 0.43 1.51 16 7 C -0.12 -2.04 5.70 30.60 0.17 -1.87 16 8 C 0.15 3.41 5.67 86.38 0.49 3.90 16 9 N -0.73 -20.28 5.56 -478.54 -2.66 -22.94 16 10 C 0.70 26.92 8.57 179.06 1.53 28.45 16 11 O -0.65 -30.77 16.34 -3.99 -0.07 -30.83 16 12 N -0.72 -28.12 5.48 -478.54 -2.62 -30.75 16 13 C 0.20 9.39 5.50 86.38 0.48 9.86 16 14 C 0.00 0.09 1.38 -52.92 -0.07 0.01 16 15 C -0.50 -25.56 8.63 25.60 0.22 -25.34 16 16 H 0.06 3.17 7.82 -2.91 -0.02 3.14 16 17 C 0.02 1.16 5.39 84.65 0.46 1.61 16 18 N -0.91 -51.82 12.91 21.44 0.28 -51.54 16 19 Si 0.95 42.41 29.55 68.60 2.03 44.44 16 20 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 21 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 23 C -0.17 -6.94 9.96 30.62 0.30 -6.64 16 24 C -0.16 -7.28 9.42 30.62 0.29 -6.99 16 25 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.41 8.81 8.49 -92.70 -0.79 8.02 16 39 H 0.41 14.04 8.38 -92.70 -0.78 13.27 16 40 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.03 1.51 8.09 -2.39 -0.02 1.49 16 42 H 0.26 14.20 8.32 -92.71 -0.77 13.43 16 43 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 44 H 0.09 3.32 8.14 -2.38 -0.02 3.30 16 45 H 0.06 3.17 8.14 -2.39 -0.02 3.15 16 46 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -70.49 389.59 -0.22 -70.71 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: -0.61 Total: 30.89 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 6.46 Total: 8.48 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -5.01 Total: -105.23 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -3.09 Total: -49.30 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -70.49 -0.22 -70.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430536271.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.879 kcal (2) G-P(sol) polarization free energy of solvation -70.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds