Wall clock time and date at job start Tue Mar 31 2020 07:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99798 * 2 1 4 4 C 1.53002 * 109.47135 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46885 * 184.99806 * 4 3 2 6 6 N 1.46498 * 109.47088 * 65.00144 * 4 3 2 7 7 C 1.34768 * 120.00216 * 84.99897 * 6 4 3 8 8 O 1.21592 * 120.00114 * 0.02562 * 7 6 4 9 9 N 1.34777 * 120.00185 * 179.97438 * 7 6 4 10 10 C 1.46503 * 120.00435 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47365 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47104 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46905 * 179.97438 * 12 11 10 14 14 H 1.07992 * 119.99872 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99765 * 179.97438 * 13 12 11 16 16 N 1.31508 * 119.99844 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00025 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47175 * 89.99529 * 17 15 13 19 19 H 1.48504 * 109.47233 * 209.99970 * 17 15 13 20 20 H 1.48508 * 109.47046 * 329.99893 * 17 15 13 21 21 C 1.53002 * 109.47011 * 304.99650 * 4 3 2 22 22 H 1.09002 * 110.55002 * 61.42835 * 21 4 3 23 23 C 1.55227 * 110.77658 * 184.28779 * 21 4 3 24 24 C 1.54813 * 101.98357 * 155.50393 * 23 21 4 25 25 C 1.54098 * 104.30472 * 339.26359 * 24 23 21 26 26 O 1.43744 * 107.29564 * 357.90152 * 25 24 23 27 27 H 1.09000 * 109.47253 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47686 * 300.00516 * 1 2 3 29 29 H 1.09008 * 109.46744 * 60.00094 * 1 2 3 30 30 H 1.08999 * 109.47447 * 59.99920 * 3 2 1 31 31 H 1.09001 * 109.47232 * 299.99546 * 3 2 1 32 32 H 0.97005 * 119.99396 * 265.00176 * 6 4 3 33 33 H 0.97007 * 120.00002 * 0.02562 * 9 7 6 34 34 H 1.08999 * 109.47124 * 300.00588 * 10 9 7 35 35 H 1.08996 * 109.46965 * 60.00112 * 10 9 7 36 36 H 1.08997 * 109.46877 * 300.00568 * 11 10 9 37 37 H 1.08998 * 109.46671 * 59.99819 * 11 10 9 38 38 H 1.08999 * 109.47180 * 300.00253 * 12 11 10 39 39 H 1.08996 * 109.47171 * 59.99937 * 12 11 10 40 40 H 0.97004 * 119.99992 * 179.97438 * 16 15 13 41 41 H 1.08999 * 110.89081 * 37.37124 * 23 21 4 42 42 H 1.09003 * 111.02102 * 273.69638 * 23 21 4 43 43 H 1.09002 * 110.48794 * 220.51904 * 24 23 21 44 44 H 1.09002 * 110.48657 * 98.00326 * 24 23 21 45 45 H 1.08999 * 109.88182 * 117.33024 * 25 24 23 46 46 H 1.08997 * 109.87763 * 238.47782 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9783 2.1767 0.0902 6 7 3.9767 0.5641 -1.2509 7 6 4.1663 1.3223 -2.3488 8 8 3.9715 2.5215 -2.3006 9 7 4.5727 0.7513 -3.5001 10 6 4.7783 1.5754 -4.6938 11 6 5.2347 0.6881 -5.8537 12 6 5.4499 1.5488 -7.1002 13 6 5.9001 0.6749 -8.2424 14 1 6.0201 -0.3881 -8.0942 15 6 6.1576 1.2323 -9.4769 16 7 6.5509 0.4698 -10.4736 17 14 5.9492 3.0709 -9.7333 18 1 7.2289 3.7610 -9.4311 19 1 5.5661 3.3337 -11.1438 20 1 4.8869 3.5796 -8.8288 21 6 3.9780 0.3200 1.1827 22 1 3.5648 -0.6851 1.0974 23 6 5.5266 0.2654 1.2757 24 6 5.7475 -0.0546 2.7741 25 6 4.4317 0.3728 3.4528 26 8 3.5848 0.9271 2.4322 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 4.1323 -0.3926 -1.2892 33 1 4.7284 -0.2054 -3.5385 34 1 3.8435 2.0687 -4.9602 35 1 5.5404 2.3273 -4.4894 36 1 6.1693 0.1944 -5.5875 37 1 4.4722 -0.0636 -6.0579 38 1 4.5155 2.0428 -7.3664 39 1 6.2126 2.3001 -6.8956 40 1 6.7317 0.8619 -11.3422 41 1 5.9658 1.2282 1.0147 42 1 5.9284 -0.5277 0.6451 43 1 6.5847 0.5217 3.1679 44 1 5.9203 -1.1216 2.9149 45 1 3.9491 -0.4938 3.9046 46 1 4.6351 1.1253 4.2147 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000434176679.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:49 Heat of formation + Delta-G solvation = -135.583759 kcal Electronic energy + Delta-G solvation = -24681.761895 eV Core-core repulsion = 20992.221662 eV Total energy + Delta-G solvation = -3689.540233 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.45632 -39.41583 -37.92854 -35.77763 -34.82961 -33.31218 -32.39961 -31.67638 -30.45331 -28.39869 -27.06296 -26.18760 -23.95136 -22.83186 -21.73373 -21.22063 -20.80522 -20.27045 -18.28638 -17.35166 -16.80528 -16.49107 -16.48691 -15.91719 -15.62683 -15.46304 -15.22761 -15.02394 -14.36998 -14.16251 -14.00899 -13.83463 -13.69941 -12.99599 -12.68902 -12.59709 -12.37756 -12.08260 -11.95990 -11.89524 -11.79683 -11.62432 -11.08902 -11.05353 -11.00810 -10.87908 -10.30145 -10.04920 -10.00125 -9.83519 -9.78259 -9.66412 -9.26589 -9.21839 -8.68473 -8.54735 -6.05633 -4.04217 2.57125 3.26277 3.32197 3.39708 3.44372 3.58875 3.65335 4.08532 4.25778 4.34304 4.45311 4.54925 4.69418 4.84574 4.86503 5.04803 5.13757 5.18143 5.27244 5.28636 5.32404 5.35997 5.42367 5.44862 5.50294 5.53058 5.61157 5.64772 5.70873 5.78048 6.05306 6.32648 6.39377 6.48430 6.55170 6.70390 6.83477 6.91805 7.02119 7.24807 7.38048 7.76667 8.09532 8.50984 8.68903 8.98329 9.56748 11.07612 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.022666 B = 0.002508 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.056251 B =11159.669177 C =11719.469717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.388 6.388 3 C 0.051 3.949 4 C 0.180 3.820 5 H 0.108 0.892 6 N -0.737 5.737 7 C 0.705 3.295 8 O -0.594 6.594 9 N -0.740 5.740 10 C 0.133 3.867 11 C -0.113 4.113 12 C -0.011 4.011 13 C -0.521 4.521 14 H 0.072 0.928 15 C 0.066 3.934 16 N -0.904 5.904 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.264 1.264 21 C 0.076 3.924 22 H 0.084 0.916 23 C -0.149 4.149 24 C -0.157 4.157 25 C 0.049 3.951 26 O -0.368 6.368 27 H 0.083 0.917 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.397 0.603 33 H 0.396 0.604 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.019 0.981 39 H 0.014 0.986 40 H 0.263 0.737 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.059 0.941 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.858 -2.942 29.167 30.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.027 4.027 4 C 0.074 3.926 5 H 0.126 0.874 6 N -0.393 5.393 7 C 0.404 3.596 8 O -0.473 6.473 9 N -0.394 5.394 10 C 0.010 3.990 11 C -0.151 4.151 12 C -0.049 4.049 13 C -0.559 4.559 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.542 5.542 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.189 1.189 21 C 0.018 3.982 22 H 0.102 0.898 23 C -0.187 4.187 24 C -0.195 4.195 25 C -0.028 4.028 26 O -0.286 6.286 27 H 0.102 0.898 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.231 0.769 33 H 0.229 0.771 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.037 -1.808 29.040 29.935 hybrid contribution 0.038 0.038 -0.331 0.335 sum -6.999 -1.770 28.710 29.603 Atomic orbital electron populations 1.22695 0.81167 1.02485 0.99922 1.87802 1.19583 1.27803 1.95462 1.22987 0.93517 0.85048 1.01146 1.20629 0.92285 0.97942 0.81786 0.87415 1.44857 1.74171 1.10919 1.09388 1.15923 0.78113 0.85244 0.80276 1.90918 1.58918 1.13092 1.84359 1.45312 1.72461 1.11640 1.09994 1.21513 1.00997 0.93723 0.82766 1.21703 1.00682 0.98542 0.94148 1.19501 0.96714 0.95812 0.92872 1.21099 1.45342 0.95902 0.93598 0.91023 1.25030 0.94494 0.98026 0.95963 1.69912 1.46578 1.35593 1.02160 0.86775 0.79141 0.86023 0.77359 1.20248 1.21398 1.18852 1.23225 0.93362 0.96956 0.84632 0.89815 1.23217 0.95846 1.03441 0.96211 1.22940 0.98561 1.02319 0.95632 1.23144 0.89751 0.98610 0.91314 1.88847 1.58035 1.65718 1.16040 0.89818 0.94204 0.94178 0.91923 0.92391 0.76883 0.77093 0.92008 0.91955 0.92159 0.92130 0.96293 0.96721 0.92713 0.90149 0.89904 0.90392 0.90602 0.92315 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.16 9.83 -35.23 -0.35 -4.50 16 3 C 0.05 0.56 5.56 37.16 0.21 0.77 16 4 C 0.18 1.90 2.16 -67.93 -0.15 1.76 16 5 H 0.11 1.31 7.58 -51.93 -0.39 0.92 16 6 N -0.74 -7.87 4.79 -58.67 -0.28 -8.15 16 7 C 0.70 10.23 8.53 -86.93 -0.74 9.49 16 8 O -0.59 -11.02 16.01 5.28 0.08 -10.94 16 9 N -0.74 -10.17 5.56 -65.23 -0.36 -10.53 16 10 C 0.13 2.22 5.67 -4.04 -0.02 2.20 16 11 C -0.11 -2.09 5.27 -26.73 -0.14 -2.23 16 12 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 13 C -0.52 -14.69 9.66 -34.44 -0.33 -15.02 16 14 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 15 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 16 N -0.90 -27.79 13.96 55.43 0.77 -27.01 16 17 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 21 C 0.08 0.67 2.65 -25.55 -0.07 0.60 16 22 H 0.08 0.73 7.67 -51.93 -0.40 0.33 16 23 C -0.15 -1.10 6.39 -24.60 -0.16 -1.25 16 24 C -0.16 -0.94 7.00 -25.20 -0.18 -1.11 16 25 C 0.05 0.33 7.70 37.73 0.29 0.63 16 26 O -0.37 -3.58 10.78 -35.23 -0.38 -3.96 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.04 0.34 8.14 -51.92 -0.42 -0.09 16 30 H 0.06 0.66 7.92 -51.93 -0.41 0.24 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.40 3.29 8.62 -40.82 -0.35 2.94 16 33 H 0.40 4.34 8.49 -40.82 -0.35 4.00 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 39 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.08 0.68 8.06 -51.93 -0.42 0.26 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 375.50 15.07 5.66 5.66 Total: -1.00 -33.87 375.50 -8.08 -41.94 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -8.17 Total: 1.71 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -0.39 Total: -1.33 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.13 Total: -45.70 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.64 Total: -19.40 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.87 -8.08 -41.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434176679.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.641 kcal (2) G-P(sol) polarization free energy of solvation -33.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds