Wall clock time and date at job start Tue Mar 31 2020 07:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45201 * 109.47149 * 2 1 4 4 C 1.34633 * 117.00059 * 180.02562 * 3 2 1 5 5 O 1.21517 * 120.00255 * 359.97438 * 4 3 2 6 6 N 1.34787 * 120.00169 * 179.97438 * 4 3 2 7 7 C 1.46495 * 119.99894 * 179.97438 * 6 4 3 8 8 H 1.08998 * 109.50711 * 325.07958 * 7 6 4 9 9 C 1.53114 * 109.50436 * 85.20162 * 7 6 4 10 10 C 1.53120 * 109.16525 * 177.59200 * 9 7 6 11 11 C 1.53041 * 109.27389 * 302.34758 * 10 9 7 12 12 N 1.46842 * 109.52831 * 59.17605 * 11 10 9 13 13 C 1.46900 * 111.00117 * 174.15953 * 12 11 10 14 14 C 1.53006 * 109.46954 * 199.93139 * 13 12 11 15 15 O 1.42895 * 109.47044 * 64.58493 * 14 13 12 16 16 C 1.42908 * 113.99690 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47093 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00118 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00202 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99820 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00439 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47027 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47487 * 120.00087 * 21 19 17 24 24 H 1.48500 * 109.47684 * 240.00335 * 21 19 17 25 25 C 1.46850 * 111.19802 * 298.26149 * 12 11 10 26 26 H 1.09000 * 109.47127 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47057 * 300.00124 * 1 2 3 28 28 H 1.08998 * 109.47334 * 60.00396 * 1 2 3 29 29 H 1.08995 * 109.47363 * 240.00139 * 2 1 3 30 30 H 1.08998 * 109.47334 * 119.99604 * 2 1 3 31 31 H 0.96998 * 119.99309 * 0.02562 * 6 4 3 32 32 H 1.08998 * 109.52292 * 297.49639 * 9 7 6 33 33 H 1.09000 * 109.52510 * 57.62536 * 9 7 6 34 34 H 1.08998 * 109.50161 * 62.28186 * 10 9 7 35 35 H 1.08989 * 109.50700 * 182.40474 * 10 9 7 36 36 H 1.08999 * 109.46343 * 299.15547 * 11 10 9 37 37 H 1.09002 * 109.45988 * 179.19325 * 11 10 9 38 38 H 1.08997 * 109.47294 * 319.92461 * 13 12 11 39 39 H 1.08998 * 109.46825 * 79.93162 * 13 12 11 40 40 H 1.08998 * 109.46861 * 184.58737 * 14 13 12 41 41 H 1.09000 * 109.46994 * 304.58423 * 14 13 12 42 42 H 1.09000 * 109.46670 * 299.99974 * 16 15 14 43 43 H 1.08996 * 109.47148 * 59.99824 * 16 15 14 44 44 H 0.97002 * 120.00131 * 179.97438 * 20 19 17 45 45 H 1.08992 * 109.46282 * 181.75826 * 25 12 11 46 46 H 1.09000 * 109.45441 * 301.73079 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3487 1.5454 -0.0005 5 8 4.0890 0.5817 -0.0005 6 7 3.8639 2.7909 -0.0011 7 6 5.3162 2.9828 -0.0011 8 1 5.7874 2.1955 0.5874 9 6 5.8389 2.9294 -1.4393 10 6 7.3477 3.1905 -1.4358 11 6 7.6239 4.5479 -0.7850 12 7 7.1058 4.5480 0.5889 13 6 7.4749 5.7847 1.2907 14 6 7.3746 5.5632 2.8013 15 8 8.3378 4.5878 3.2047 16 6 8.3272 4.3053 4.6055 17 6 9.3769 3.2699 4.9171 18 1 9.9910 2.8681 4.1248 19 6 9.5541 2.8364 6.2138 20 7 8.8066 3.3261 7.1788 21 14 10.8547 1.5524 6.6000 22 1 11.5550 1.1654 5.3489 23 1 11.8359 2.1155 7.5619 24 1 10.2078 0.3560 7.1961 25 6 5.6514 4.3461 0.6080 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.2729 3.5601 -0.0007 32 1 5.6407 1.9447 -1.8625 33 1 5.3380 3.6906 -2.0374 34 1 7.8513 2.4066 -0.8702 35 1 7.7184 3.1961 -2.4607 36 1 7.1314 5.3328 -1.3590 37 1 8.6984 4.7305 -0.7680 38 1 8.4974 6.0585 1.0308 39 1 6.7978 6.5860 0.9951 40 1 7.5691 6.5021 3.3198 41 1 6.3739 5.2107 3.0511 42 1 8.5412 5.2180 5.1618 43 1 7.3463 3.9266 4.8924 44 1 8.9310 3.0208 8.0911 45 1 5.2932 4.3822 1.6368 46 1 5.1681 5.1319 0.0274 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495597278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:31 Heat of formation + Delta-G solvation = -159.789135 kcal Electronic energy + Delta-G solvation = -24948.777647 eV Core-core repulsion = 21258.187790 eV Total energy + Delta-G solvation = -3690.589857 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.69141 -40.22104 -38.50035 -37.73138 -36.08300 -34.95009 -33.99636 -32.59001 -30.67373 -30.37818 -28.70717 -25.31664 -24.93018 -24.45299 -23.57753 -22.58880 -21.98623 -21.14746 -19.74807 -18.62029 -18.00838 -17.71652 -17.42809 -17.35353 -16.47388 -16.25216 -15.95887 -15.75610 -15.46520 -15.31768 -14.91387 -14.66570 -14.55974 -14.37292 -13.82863 -13.59300 -13.57473 -13.27863 -13.01655 -12.96725 -12.74826 -12.58166 -12.54484 -12.43610 -12.31447 -12.06064 -11.92881 -11.76663 -11.65338 -11.56815 -11.39516 -11.20410 -10.84961 -10.28977 -10.15033 -9.14080 -8.31880 -6.43228 1.03974 1.38564 1.40448 1.55261 1.66327 2.35173 2.82770 3.01723 3.24694 3.28727 3.66612 3.78229 4.00647 4.01274 4.08831 4.12519 4.25008 4.30774 4.33243 4.34101 4.45799 4.58931 4.63232 4.65076 4.72911 4.74658 4.83497 4.89421 4.91911 4.94192 4.98709 5.05633 5.12026 5.18864 5.20718 5.24009 5.41088 5.43832 5.56487 5.98624 6.12526 6.23117 6.32355 6.59052 6.89188 7.23920 7.29200 8.80755 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.011296 B = 0.003448 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.057887 B = 8118.634819 C = 9541.463331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.072 3.928 3 O -0.371 6.371 4 C 0.645 3.355 5 O -0.609 6.609 6 N -0.689 5.689 7 C 0.167 3.833 8 H 0.058 0.942 9 C -0.120 4.120 10 C -0.112 4.112 11 C 0.059 3.941 12 N -0.555 5.555 13 C 0.074 3.926 14 C 0.055 3.945 15 O -0.395 6.395 16 C 0.211 3.789 17 C -0.543 4.543 18 H 0.059 0.941 19 C 0.005 3.995 20 N -0.932 5.932 21 Si 0.981 3.019 22 H -0.265 1.265 23 H -0.268 1.268 24 H -0.273 1.273 25 C 0.058 3.942 26 H 0.103 0.897 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.420 0.580 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.096 0.904 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.048 0.952 41 H 0.033 0.967 42 H -0.015 1.015 43 H -0.022 1.022 44 H 0.270 0.730 45 H 0.066 0.934 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.978 2.293 -20.379 25.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.002 4.002 3 O -0.285 6.285 4 C 0.398 3.602 5 O -0.500 6.500 6 N -0.349 5.349 7 C 0.063 3.937 8 H 0.077 0.923 9 C -0.158 4.158 10 C -0.150 4.150 11 C -0.068 4.068 12 N -0.281 5.281 13 C -0.053 4.053 14 C -0.022 4.022 15 O -0.314 6.314 16 C 0.136 3.864 17 C -0.581 4.581 18 H 0.077 0.923 19 C -0.194 4.194 20 N -0.571 5.571 21 Si 0.804 3.196 22 H -0.189 1.189 23 H -0.193 1.193 24 H -0.198 1.198 25 C -0.070 4.070 26 H 0.121 0.879 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.257 0.743 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.003 0.997 43 H -0.005 1.005 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.382 1.292 -20.076 24.730 hybrid contribution -0.231 0.237 0.680 0.756 sum -14.613 1.529 -19.396 24.332 Atomic orbital electron populations 1.21838 0.89811 1.04575 1.03839 1.23246 0.96819 0.77698 1.02485 1.86243 1.20834 1.34656 1.86736 1.18302 0.81451 0.84586 0.75893 1.91001 1.60779 1.41096 1.57119 1.44546 1.08007 1.05178 1.77171 1.20841 0.76982 0.98090 0.97766 0.92334 1.21908 0.96651 1.02338 0.94922 1.21539 0.94900 0.97069 1.01498 1.22172 1.00618 0.97239 0.86820 1.61497 1.11553 1.37809 1.17228 1.22049 1.02378 0.90119 0.90750 1.22644 0.91852 0.91475 0.96239 1.87896 1.57762 1.60534 1.25254 1.19748 0.94846 0.94015 0.77826 1.21413 1.19204 1.23441 0.94033 0.92305 1.25956 0.98982 0.99112 0.95302 1.70078 1.41067 1.44751 1.01223 0.85161 0.78075 0.77876 0.78458 1.18940 1.19320 1.19838 1.22178 0.88769 0.95087 1.00970 0.87889 0.91385 0.90787 0.91179 0.92083 0.74263 0.92695 0.89379 0.93278 0.88579 0.92414 0.90460 0.89751 0.90065 0.93392 0.94892 0.99708 1.00477 0.92111 0.91522 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 10.29 71.98 0.74 -0.88 16 2 C 0.07 1.36 6.19 71.98 0.45 1.81 16 3 O -0.37 -8.64 10.27 -55.42 -0.57 -9.20 16 4 C 0.64 18.13 8.72 129.79 1.13 19.26 16 5 O -0.61 -22.07 15.80 19.79 0.31 -21.76 16 6 N -0.69 -15.56 5.08 -569.88 -2.90 -18.46 16 7 C 0.17 4.29 2.62 45.04 0.12 4.41 16 8 H 0.06 2.08 7.58 -2.39 -0.02 2.06 16 9 C -0.12 -2.53 5.58 30.67 0.17 -2.36 16 10 C -0.11 -2.37 6.09 30.65 0.19 -2.19 16 11 C 0.06 1.24 5.43 86.33 0.47 1.71 16 12 N -0.56 -15.35 4.53 -896.36 -4.06 -19.41 16 13 C 0.07 2.00 5.39 86.31 0.47 2.47 16 14 C 0.06 2.04 6.13 71.98 0.44 2.48 16 15 O -0.39 -19.95 10.27 -148.98 -1.53 -21.48 16 16 C 0.21 12.35 5.69 71.24 0.41 12.75 16 17 C -0.54 -33.79 9.43 25.60 0.24 -33.55 16 18 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 19 C 0.00 0.27 5.46 84.65 0.46 0.74 16 20 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 21 Si 0.98 46.23 29.54 68.60 2.03 48.25 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 24 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 25 C 0.06 1.38 4.76 86.33 0.41 1.79 16 26 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.42 6.61 8.71 -92.71 -0.81 5.80 16 32 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 34 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.68 7.93 -2.39 -0.02 1.66 16 38 H 0.08 2.25 7.79 -2.39 -0.02 2.23 16 39 H 0.08 1.57 8.00 -2.39 -0.02 1.56 16 40 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.03 1.22 6.71 -2.39 -0.02 1.20 16 42 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 43 H -0.02 -1.39 8.14 -2.39 -0.02 -1.41 16 44 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 45 H 0.07 1.81 6.65 -2.39 -0.02 1.79 16 46 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -78.59 375.33 -0.60 -79.19 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.14 Total: 11.88 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 5.69 Total: 8.43 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -6.67 Total: -95.30 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -1.79 Total: -52.45 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -78.59 -0.60 -79.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495597278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.598 kcal (2) G-P(sol) polarization free energy of solvation -78.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds