Wall clock time and date at job start Tue Mar 31 2020 08:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38832 * 119.66420 * 2 1 4 4 C 1.36629 * 120.52376 * 179.69904 * 3 2 1 5 5 C 1.39624 * 119.76794 * 0.28388 * 4 3 2 6 6 C 1.46486 * 134.03497 * 179.97438 * 5 4 3 7 7 C 1.50699 * 126.49768 * 359.97438 * 6 5 4 8 8 C 1.53005 * 109.46836 * 85.00416 * 7 6 5 9 9 N 1.46904 * 109.46773 * 179.97438 * 8 7 6 10 10 C 1.46902 * 110.99853 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.47174 * 179.97438 * 10 9 8 12 12 H 1.08997 * 109.47572 * 305.00148 * 11 10 9 13 13 C 1.53000 * 109.47110 * 65.00429 * 11 10 9 14 14 C 1.53002 * 109.46910 * 184.99930 * 11 10 9 15 15 C 1.50702 * 109.46964 * 175.00136 * 14 11 10 16 16 H 1.08001 * 119.99886 * 0.02562 * 15 14 11 17 17 C 1.37878 * 119.99885 * 179.97438 * 15 14 11 18 18 N 1.31516 * 119.99647 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00077 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47330 * 89.99987 * 19 17 15 21 21 H 1.48501 * 109.46984 * 209.99751 * 19 17 15 22 22 H 1.48498 * 109.47071 * 329.99703 * 19 17 15 23 23 C 1.34240 * 106.99879 * 180.02562 * 6 5 4 24 24 N 1.36829 * 109.93090 * 359.97438 * 23 6 5 25 25 H 0.96993 * 125.06240 * 180.02562 * 24 23 6 26 26 C 1.37689 * 109.87101 * 0.02562 * 24 23 6 27 27 C 1.37747 * 119.66804 * 180.24609 * 2 1 3 28 28 H 1.08994 * 109.47381 * 89.99728 * 1 2 3 29 29 H 1.08999 * 109.47084 * 209.99909 * 1 2 3 30 30 H 1.09007 * 109.47119 * 329.99841 * 1 2 3 31 31 H 1.08002 * 119.74071 * 359.97438 * 3 2 1 32 32 H 1.08003 * 120.11783 * 180.25186 * 4 3 2 33 33 H 1.09007 * 109.47182 * 204.99645 * 7 6 5 34 34 H 1.08999 * 109.47672 * 325.00347 * 7 6 5 35 35 H 1.08994 * 109.46939 * 299.99501 * 8 7 6 36 36 H 1.08997 * 109.47258 * 60.00043 * 8 7 6 37 37 H 1.00894 * 111.00128 * 56.04642 * 9 8 7 38 38 H 1.09003 * 109.47177 * 300.00147 * 10 9 8 39 39 H 1.09008 * 109.47062 * 60.00007 * 10 9 8 40 40 H 1.09004 * 109.47470 * 59.99517 * 13 11 10 41 41 H 1.08997 * 109.47462 * 179.97438 * 13 11 10 42 42 H 1.09001 * 109.47067 * 299.99836 * 13 11 10 43 43 H 1.08999 * 109.47697 * 295.00022 * 14 11 10 44 44 H 1.08998 * 109.47110 * 55.00375 * 14 11 10 45 45 H 0.97000 * 119.99581 * 180.02562 * 18 17 15 46 46 H 1.08000 * 125.03123 * 180.02562 * 23 6 5 47 47 H 1.08006 * 120.11087 * 0.03118 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.2064 0.0000 4 6 3.5602 1.2269 0.0062 5 6 4.2715 0.0254 0.0065 6 6 5.6964 -0.3142 0.0117 7 6 6.8492 0.6564 0.0179 8 6 7.1527 1.0785 1.4570 9 7 8.2768 2.0241 1.4631 10 6 8.5968 2.4527 2.8313 11 6 9.7700 3.4341 2.7972 12 1 10.6115 2.9765 2.2771 13 6 9.3481 4.7080 2.0623 14 6 10.1839 3.7841 4.2279 15 6 11.4151 4.6525 4.1965 16 1 11.8578 4.9277 3.2506 17 6 11.9758 5.0967 5.3752 18 7 13.0505 5.8542 5.3477 19 14 11.2097 4.6213 7.0112 20 1 11.8144 3.3528 7.4910 21 1 11.4592 5.6958 8.0054 22 1 9.7463 4.4376 6.8377 23 6 5.7806 -1.6540 0.0086 24 7 4.5260 -2.2001 0.0025 25 1 4.3320 -3.1504 -0.0003 26 6 3.5801 -1.1996 0.0009 27 6 2.1888 -1.1969 -0.0051 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6444 2.1360 -0.0004 32 1 4.0880 2.1691 0.0102 33 1 7.7289 0.1786 -0.4136 34 1 6.5874 1.5354 -0.5710 35 1 6.2732 1.5562 1.8885 36 1 7.4146 0.1995 2.0459 37 1 8.0844 2.8184 0.8714 38 1 7.7273 2.9405 3.2720 39 1 8.8681 1.5833 3.4303 40 1 8.5065 5.1657 2.5824 41 1 10.1837 5.4074 2.0383 42 1 9.0531 4.4587 1.0430 43 1 9.3729 4.3212 4.7198 44 1 10.3993 2.8681 4.7782 45 1 13.4451 6.1663 6.1770 46 1 6.7020 -2.2173 0.0114 47 1 1.6451 -2.1301 -0.0097 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602526302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:28:18 Heat of formation + Delta-G solvation = 9.127613 kcal Electronic energy + Delta-G solvation = -22962.937619 eV Core-core repulsion = 19722.814556 eV Total energy + Delta-G solvation = -3240.123063 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.16501 -38.62550 -38.22656 -36.16975 -34.49973 -33.46169 -32.29695 -30.75062 -29.68396 -28.64109 -27.04287 -26.41053 -24.10469 -23.67918 -22.98094 -21.80823 -20.72582 -20.09297 -18.94776 -18.60712 -17.27950 -16.84296 -16.44212 -16.07966 -15.76529 -15.48340 -15.28620 -15.21724 -14.92479 -14.69435 -14.63618 -14.16712 -13.96045 -13.84301 -13.54466 -13.27783 -13.08182 -12.88895 -12.83301 -12.75938 -12.52229 -12.42234 -12.11306 -12.09328 -11.89309 -11.74274 -11.60517 -11.40636 -11.18961 -11.03744 -10.72491 -10.38194 -9.30934 -9.04750 -8.48620 -8.25091 -6.27073 0.21330 0.69695 1.36243 1.37721 1.49699 1.75372 2.29011 2.38394 2.94140 3.09886 3.32718 3.82040 3.92355 4.07185 4.16091 4.17986 4.25620 4.32661 4.39414 4.43996 4.49529 4.54268 4.59270 4.72688 4.77758 4.81486 4.86696 4.87928 4.93346 4.99009 5.02902 5.04735 5.07339 5.22645 5.27224 5.32065 5.33660 5.38680 5.56271 5.64736 5.71938 5.72332 5.74218 5.84932 5.88205 6.14868 6.27633 6.36250 6.55163 6.75393 6.80338 7.36159 8.91564 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.023211 B = 0.002251 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.024878 B =12433.806423 C =12751.978586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.078 4.078 3 C -0.155 4.155 4 C -0.087 4.087 5 C -0.132 4.132 6 C -0.191 4.191 7 C -0.030 4.030 8 C 0.072 3.928 9 N -0.692 5.692 10 C 0.075 3.925 11 C -0.071 4.071 12 H 0.055 0.945 13 C -0.130 4.130 14 C -0.007 4.007 15 C -0.517 4.517 16 H 0.036 0.964 17 C -0.001 4.001 18 N -0.953 5.953 19 Si 0.948 3.052 20 H -0.268 1.268 21 H -0.285 1.285 22 H -0.249 1.249 23 C 0.061 3.939 24 N -0.588 5.588 25 H 0.429 0.571 26 C 0.081 3.919 27 C -0.140 4.140 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.134 0.866 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.018 0.982 36 H 0.066 0.934 37 H 0.343 0.657 38 H 0.027 0.973 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.035 0.965 42 H 0.066 0.934 43 H 0.016 0.984 44 H 0.014 0.986 45 H 0.264 0.736 46 H 0.198 0.802 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.681 -18.399 -13.160 34.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.079 4.079 3 C -0.174 4.174 4 C -0.105 4.105 5 C -0.137 4.137 6 C -0.199 4.199 7 C -0.069 4.069 8 C -0.057 4.057 9 N -0.324 5.324 10 C -0.054 4.054 11 C -0.090 4.090 12 H 0.073 0.927 13 C -0.187 4.187 14 C -0.045 4.045 15 C -0.555 4.555 16 H 0.054 0.946 17 C -0.197 4.197 18 N -0.594 5.594 19 Si 0.772 3.228 20 H -0.193 1.193 21 H -0.211 1.211 22 H -0.172 1.172 23 C -0.065 4.065 24 N -0.191 5.191 25 H 0.268 0.732 26 C -0.027 4.027 27 C -0.161 4.161 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.152 0.848 32 H 0.138 0.862 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.036 0.964 36 H 0.084 0.916 37 H 0.163 0.837 38 H 0.045 0.955 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.085 0.915 43 H 0.035 0.965 44 H 0.033 0.967 45 H 0.073 0.927 46 H 0.215 0.785 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -26.093 -18.961 -13.067 34.801 hybrid contribution -0.316 0.505 1.069 1.224 sum -26.409 -18.456 -11.998 34.380 Atomic orbital electron populations 1.20799 0.89141 1.03541 1.03046 1.19908 0.97217 0.91997 0.98783 1.20790 0.93737 0.98426 1.04409 1.20457 0.94336 0.96636 0.99091 1.19419 0.93522 0.93224 1.07518 1.20329 0.92130 0.94068 1.13333 1.19723 0.94707 0.97139 0.95293 1.21890 0.90575 0.95794 0.97488 1.60521 1.41388 1.20017 1.10469 1.21880 0.96222 0.97436 0.89902 1.20892 0.96742 0.95190 0.96186 0.92680 1.21667 1.00330 0.97197 0.99504 1.19569 0.94871 0.95324 0.94742 1.21451 1.10894 1.30064 0.93106 0.94593 1.26010 0.95269 0.94861 1.03518 1.70075 1.23181 1.37556 1.28635 0.85686 0.80337 0.78109 0.78669 1.19320 1.21136 1.17217 1.22100 0.88591 0.93500 1.02347 1.41736 1.04178 1.08464 1.64763 0.73156 1.18472 0.91448 0.88368 1.04386 1.20133 0.89675 0.99118 1.07138 0.90318 0.90721 0.90829 0.84776 0.86157 0.89807 0.91677 0.96372 0.91572 0.83734 0.95524 0.91720 0.93439 0.94547 0.91473 0.96534 0.96739 0.92702 0.78471 0.84429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.99 71.23 0.71 -0.39 16 2 C -0.08 -1.28 5.88 -19.84 -0.12 -1.40 16 3 C -0.15 -2.86 9.62 22.04 0.21 -2.64 16 4 C -0.09 -1.87 10.05 22.23 0.22 -1.64 16 5 C -0.13 -2.97 6.35 -20.20 -0.13 -3.10 16 6 C -0.19 -3.87 5.57 -18.63 -0.10 -3.98 16 7 C -0.03 -0.61 6.01 29.85 0.18 -0.43 16 8 C 0.07 1.69 5.67 86.30 0.49 2.18 16 9 N -0.69 -18.88 6.50 -513.87 -3.34 -22.22 16 10 C 0.07 2.42 5.14 86.30 0.44 2.86 16 11 C -0.07 -2.82 2.55 -10.79 -0.03 -2.84 16 12 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 13 C -0.13 -4.78 8.77 71.98 0.63 -4.14 16 14 C -0.01 -0.34 3.52 29.85 0.10 -0.24 16 15 C -0.52 -30.21 8.96 25.60 0.23 -29.98 16 16 H 0.04 2.31 7.30 -2.91 -0.02 2.28 16 17 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 18 N -0.95 -60.89 13.96 21.45 0.30 -60.59 16 19 Si 0.95 45.36 27.47 68.60 1.88 47.24 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 21 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 22 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 23 C 0.06 0.94 11.73 83.00 0.97 1.92 16 24 N -0.59 -8.37 6.07 -187.61 -1.14 -9.51 16 25 H 0.43 3.22 8.96 -92.71 -0.83 2.39 16 26 C 0.08 1.57 7.28 39.03 0.28 1.85 16 27 C -0.14 -2.34 9.71 22.37 0.22 -2.12 16 28 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.60 8.08 -2.39 -0.02 0.58 16 30 H 0.07 0.66 8.08 -2.38 -0.02 0.64 16 31 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.12 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.34 8.76 6.98 -89.70 -0.63 8.13 16 38 H 0.03 0.84 8.14 -2.39 -0.02 0.83 16 39 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.04 1.55 6.95 -2.39 -0.02 1.53 16 42 H 0.07 2.02 6.68 -2.39 -0.02 2.00 16 43 H 0.02 0.78 7.20 -2.39 -0.02 0.76 16 44 H 0.01 0.67 7.57 -2.39 -0.02 0.65 16 45 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 46 H 0.20 1.77 8.06 -2.91 -0.02 1.75 16 47 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -71.45 378.63 1.93 -69.52 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -0.56 Total: 19.23 kcal Atomic # 6 Polarization: -48.45 SS G_CDS: 4.79 Total: -43.67 kcal Atomic # 7 Polarization: -88.14 SS G_CDS: -4.18 Total: -92.32 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.24 kcal Total: -71.45 1.93 -69.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602526302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.647 kcal (2) G-P(sol) polarization free energy of solvation -71.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds