Wall clock time and date at job start Tue Mar 31 2020 07:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 119.99693 * 2 1 4 4 H 1.48509 * 109.47057 * 239.99655 * 3 2 1 5 5 H 1.48507 * 109.47611 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47446 * 119.99598 * 3 2 1 7 7 C 1.37873 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99668 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00395 * 0.02562 * 7 2 1 10 10 C 1.53937 * 113.73227 * 179.97438 * 9 7 2 11 11 N 1.47955 * 86.18157 * 138.07796 * 10 9 7 12 12 C 1.46896 * 111.00525 * 222.41550 * 11 10 9 13 13 C 1.50703 * 109.47363 * 169.99959 * 12 11 10 14 14 C 1.38288 * 119.92072 * 269.72828 * 13 12 11 15 15 C 1.38113 * 120.06854 * 179.72906 * 14 13 12 16 16 C 1.38916 * 119.92253 * 0.54293 * 15 14 13 17 17 N 1.39678 * 120.06737 * 179.75286 * 16 15 14 18 18 C 1.46850 * 110.99776 * 124.19009 * 17 16 15 19 19 C 1.53032 * 109.52075 * 174.15610 * 18 17 16 20 20 C 1.53110 * 109.28067 * 59.17921 * 19 18 17 21 21 C 1.53123 * 109.16046 * 302.34571 * 20 19 18 22 22 C 1.46841 * 111.00338 * 359.97438 * 17 16 15 23 23 C 1.38910 * 119.85292 * 359.73083 * 16 15 14 24 24 C 1.38102 * 119.92358 * 359.97438 * 23 16 15 25 25 C 1.47961 * 90.76430 * 335.31007 * 11 10 9 26 26 H 0.96994 * 120.00600 * 0.02562 * 1 2 3 27 27 H 1.08998 * 113.01170 * 48.36480 * 9 7 2 28 28 H 1.09005 * 113.75745 * 252.39518 * 10 9 7 29 29 H 1.08996 * 113.76539 * 23.76205 * 10 9 7 30 30 H 1.08998 * 109.47190 * 290.00447 * 12 11 10 31 31 H 1.09002 * 109.47036 * 50.00132 * 12 11 10 32 32 H 1.07998 * 119.96446 * 359.97438 * 14 13 12 33 33 H 1.07999 * 120.03573 * 180.27142 * 15 14 13 34 34 H 1.09000 * 109.45952 * 294.17502 * 18 17 16 35 35 H 1.09003 * 109.46162 * 54.14104 * 18 17 16 36 36 H 1.08998 * 109.50485 * 299.23782 * 19 18 17 37 37 H 1.09003 * 109.50076 * 179.11852 * 19 18 17 38 38 H 1.08997 * 109.52797 * 182.44122 * 20 19 18 39 39 H 1.09008 * 109.52555 * 62.24793 * 20 19 18 40 40 H 1.09003 * 109.50128 * 297.70899 * 21 20 19 41 41 H 1.09002 * 109.50088 * 177.59133 * 21 20 19 42 42 H 1.08999 * 109.46124 * 305.85351 * 22 17 16 43 43 H 1.08996 * 109.46107 * 65.82209 * 22 17 16 44 44 H 1.07991 * 120.03578 * 180.02562 * 23 16 15 45 45 H 1.07998 * 119.96229 * 179.97438 * 24 23 16 46 46 H 1.09002 * 113.75838 * 270.37219 * 25 11 10 47 47 H 1.09002 * 113.76303 * 139.00391 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.1618 -3.7402 0.0005 11 7 1.2179 -4.3106 0.9869 12 6 1.9374 -4.9921 2.0712 13 6 0.9707 -5.3430 3.1727 14 6 0.7451 -4.4489 4.2032 15 6 -0.1444 -4.7650 5.2114 16 6 -0.8042 -5.9873 5.1953 17 7 -1.7006 -6.3123 6.2161 18 6 -3.0210 -6.6497 5.6692 19 6 -3.9318 -7.1391 6.7974 20 6 -4.0624 -6.0395 7.8548 21 6 -2.6691 -5.6727 8.3731 22 6 -1.7948 -5.2257 7.1994 23 6 -0.5709 -6.8855 4.1616 24 6 0.3152 -6.5605 3.1535 25 6 0.7984 -2.9532 1.4000 26 1 -0.4851 0.8399 -0.0004 27 1 0.4611 -2.5351 -0.7496 28 1 2.1783 -4.2728 -0.9504 29 1 3.1577 -3.5543 0.4025 30 1 2.3962 -5.9030 1.6865 31 1 2.7118 -4.3331 2.4637 32 1 1.2620 -3.5007 4.2176 33 1 -0.3235 -4.0644 6.0136 34 1 -3.4591 -5.7654 5.2064 35 1 -2.9144 -7.4357 4.9216 36 1 -3.5012 -8.0314 7.2516 37 1 -4.9166 -7.3746 6.3938 38 1 -4.6753 -6.3996 8.6811 39 1 -4.5289 -5.1602 7.4103 40 1 -2.2185 -6.5420 8.8522 41 1 -2.7517 -4.8604 9.0953 42 1 -0.7977 -4.9776 7.5631 43 1 -2.2386 -4.3482 6.7294 44 1 -1.0825 -7.8364 4.1460 45 1 0.4974 -7.2585 2.3497 46 1 1.3956 -2.5369 2.2113 47 1 -0.2744 -2.8569 1.5673 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826990557.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:51 Heat of formation + Delta-G solvation = 56.636212 kcal Electronic energy + Delta-G solvation = -24091.657651 eV Core-core repulsion = 20853.594715 eV Total energy + Delta-G solvation = -3238.062935 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.190 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.37935 -38.94200 -37.58777 -34.14808 -32.63904 -31.66716 -30.76088 -30.34281 -27.83237 -25.60289 -24.95052 -24.18902 -23.94982 -22.16058 -21.64855 -20.57202 -19.72093 -18.50920 -17.50046 -16.61751 -15.64954 -15.36294 -15.04781 -14.88407 -14.75442 -14.34229 -14.23543 -14.02843 -13.94682 -13.54846 -13.40177 -13.22389 -12.72561 -12.41669 -12.19101 -11.89684 -11.79306 -11.50350 -11.38570 -11.14266 -11.03339 -10.98337 -10.86686 -10.69499 -10.62275 -10.50540 -10.25701 -9.68803 -9.60783 -9.13474 -8.98324 -8.69921 -8.43610 -7.86868 -7.59655 -6.04197 -4.08907 1.56490 1.64615 3.29679 3.34904 3.36990 3.58700 4.01957 4.40703 4.50689 4.56769 4.66656 4.91012 5.00827 5.07099 5.10784 5.13533 5.22018 5.26048 5.29199 5.35282 5.42662 5.51632 5.59415 5.59772 5.67923 5.69505 5.81560 5.82492 5.87215 5.93653 6.04664 6.10142 6.14646 6.26536 6.38570 6.39658 6.51752 6.58096 6.67805 6.82010 6.91516 6.96759 7.03564 7.18517 7.26932 7.41942 7.73599 7.92547 8.11393 8.38350 8.93592 9.55753 11.05100 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.018744 B = 0.003106 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.476386 B = 9011.594844 C = 9858.809352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.039 3.961 10 C -0.004 4.004 11 N -0.485 5.485 12 C 0.060 3.940 13 C -0.087 4.087 14 C -0.082 4.082 15 C -0.169 4.169 16 C 0.100 3.900 17 N -0.488 5.488 18 C 0.057 3.943 19 C -0.118 4.118 20 C -0.124 4.124 21 C -0.118 4.118 22 C 0.049 3.951 23 C -0.143 4.143 24 C -0.079 4.079 25 C 0.018 3.982 26 H 0.262 0.738 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.043 0.957 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.052 0.948 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.302 -13.579 14.828 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.074 0.926 9 C 0.020 3.980 10 C -0.132 4.132 11 N -0.208 5.208 12 C -0.068 4.068 13 C -0.088 4.088 14 C -0.102 4.102 15 C -0.190 4.190 16 C 0.003 3.997 17 N -0.204 5.204 18 C -0.069 4.069 19 C -0.156 4.156 20 C -0.161 4.161 21 C -0.156 4.156 22 C -0.078 4.078 23 C -0.163 4.163 24 C -0.098 4.098 25 C -0.111 4.111 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.063 0.937 44 H 0.137 0.863 45 H 0.140 0.860 46 H 0.070 0.930 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.835 -14.381 14.921 21.529 hybrid contribution 0.855 2.115 0.098 2.283 sum -4.980 -12.266 15.019 20.021 Atomic orbital electron populations 1.69959 1.05961 1.26787 1.49646 1.25010 0.94812 0.99088 0.94709 0.86698 0.79660 0.83207 0.78660 1.20166 1.21252 1.20276 1.21058 0.92701 0.90425 1.51491 0.92566 1.20314 0.93920 0.90927 0.92875 1.24105 0.95573 0.97947 0.95605 1.68604 1.26494 1.16903 1.08793 1.21525 0.93970 0.99565 0.91730 1.19757 0.99063 0.94396 0.95587 1.20982 0.97186 0.98700 0.93295 1.21207 1.01373 0.95625 1.00790 1.18835 0.96223 0.93223 0.91411 1.59095 1.08932 1.39205 1.13189 1.22235 0.87211 1.00620 0.96826 1.21622 0.98964 0.98934 0.96068 1.21607 0.97008 0.98850 0.98665 1.21616 0.95182 1.01748 0.97005 1.22260 1.00740 0.91905 0.92847 1.20664 1.01456 0.99141 0.95016 1.20844 0.95368 0.96358 0.97273 1.24007 0.99765 0.86547 1.00801 0.92855 0.92285 0.91628 0.92724 0.91118 0.93995 0.86149 0.86006 0.93892 0.90058 0.91038 0.91231 0.91700 0.92058 0.91068 0.91259 0.90016 0.93664 0.86264 0.86046 0.92965 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.27 55.43 0.74 -24.93 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.16 8.77 -34.44 -0.30 -14.46 16 8 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 9 C 0.04 0.98 3.61 -90.84 -0.33 0.65 16 10 C 0.00 -0.08 7.53 -2.77 -0.02 -0.10 16 11 N -0.49 -9.99 6.25 -239.80 -1.50 -11.49 16 12 C 0.06 1.05 4.97 -4.98 -0.02 1.02 16 13 C -0.09 -1.43 5.12 -104.59 -0.54 -1.96 16 14 C -0.08 -1.32 8.97 -39.61 -0.36 -1.68 16 15 C -0.17 -2.45 8.82 -39.38 -0.35 -2.80 16 16 C 0.10 1.38 5.64 -83.78 -0.47 0.91 16 17 N -0.49 -5.74 4.70 -171.16 -0.80 -6.54 16 18 C 0.06 0.59 5.26 -3.83 -0.02 0.57 16 19 C -0.12 -0.96 6.09 -26.66 -0.16 -1.12 16 20 C -0.12 -0.95 6.00 -26.61 -0.16 -1.11 16 21 C -0.12 -0.97 6.09 -26.65 -0.16 -1.13 16 22 C 0.05 0.51 4.15 -3.84 -0.02 0.49 16 23 C -0.14 -1.95 9.16 -39.38 -0.36 -2.32 16 24 C -0.08 -1.17 9.69 -39.62 -0.38 -1.56 16 25 C 0.02 0.41 6.50 -2.77 -0.02 0.39 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.06 1.64 8.13 -51.93 -0.42 1.22 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.05 1.13 7.74 -51.93 -0.40 0.73 16 30 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 31 H 0.04 0.74 7.63 -51.93 -0.40 0.34 16 32 H 0.12 1.94 7.45 -52.49 -0.39 1.55 16 33 H 0.12 1.56 5.81 -52.49 -0.30 1.25 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.82 6.70 -51.93 -0.35 0.47 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.83 6.98 -51.93 -0.36 0.47 16 43 H 0.05 0.49 7.73 -51.93 -0.40 0.09 16 44 H 0.12 1.41 7.15 -52.49 -0.38 1.03 16 45 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 46 H 0.05 1.22 7.06 -51.93 -0.37 0.85 16 47 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 364.85 15.07 5.50 5.50 Total: -1.00 -28.99 364.85 -12.82 -41.82 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.96 Total: 2.04 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -3.77 Total: -22.47 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: -1.57 Total: -42.97 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.99 -12.82 -41.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826990557.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.452 kcal (2) G-P(sol) polarization free energy of solvation -28.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds