Wall clock time and date at job start Tue Mar 31 2020 07:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 119.99693 * 2 1 4 4 H 1.48509 * 109.47057 * 239.99655 * 3 2 1 5 5 H 1.48507 * 109.47611 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47446 * 119.99598 * 3 2 1 7 7 C 1.37873 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99668 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00395 * 0.02562 * 7 2 1 10 10 C 1.53937 * 113.73227 * 179.97438 * 9 7 2 11 11 N 1.47955 * 86.18157 * 138.07796 * 10 9 7 12 12 C 1.46896 * 111.00525 * 222.41550 * 11 10 9 13 13 C 1.50703 * 109.47363 * 169.99959 * 12 11 10 14 14 C 1.38288 * 119.92072 * 269.72828 * 13 12 11 15 15 C 1.38113 * 120.06854 * 179.72906 * 14 13 12 16 16 C 1.38916 * 119.92253 * 0.54293 * 15 14 13 17 17 N 1.39678 * 120.06737 * 179.75286 * 16 15 14 18 18 C 1.46850 * 110.99776 * 124.19009 * 17 16 15 19 19 C 1.53032 * 109.52075 * 174.15610 * 18 17 16 20 20 C 1.53110 * 109.28067 * 59.17921 * 19 18 17 21 21 C 1.53123 * 109.16046 * 302.34571 * 20 19 18 22 22 C 1.46841 * 111.00338 * 359.97438 * 17 16 15 23 23 C 1.38910 * 119.85292 * 359.73083 * 16 15 14 24 24 C 1.38102 * 119.92358 * 359.97438 * 23 16 15 25 25 C 1.47961 * 90.76430 * 335.31007 * 11 10 9 26 26 H 0.96994 * 120.00600 * 0.02562 * 1 2 3 27 27 H 1.08998 * 113.01170 * 48.36480 * 9 7 2 28 28 H 1.09005 * 113.75745 * 252.39518 * 10 9 7 29 29 H 1.08996 * 113.76539 * 23.76205 * 10 9 7 30 30 H 1.08998 * 109.47190 * 290.00447 * 12 11 10 31 31 H 1.09002 * 109.47036 * 50.00132 * 12 11 10 32 32 H 1.07998 * 119.96446 * 359.97438 * 14 13 12 33 33 H 1.07999 * 120.03573 * 180.27142 * 15 14 13 34 34 H 1.09000 * 109.45952 * 294.17502 * 18 17 16 35 35 H 1.09003 * 109.46162 * 54.14104 * 18 17 16 36 36 H 1.08998 * 109.50485 * 299.23782 * 19 18 17 37 37 H 1.09003 * 109.50076 * 179.11852 * 19 18 17 38 38 H 1.08997 * 109.52797 * 182.44122 * 20 19 18 39 39 H 1.09008 * 109.52555 * 62.24793 * 20 19 18 40 40 H 1.09003 * 109.50128 * 297.70899 * 21 20 19 41 41 H 1.09002 * 109.50088 * 177.59133 * 21 20 19 42 42 H 1.08999 * 109.46124 * 305.85351 * 22 17 16 43 43 H 1.08996 * 109.46107 * 65.82209 * 22 17 16 44 44 H 1.07991 * 120.03578 * 180.02562 * 23 16 15 45 45 H 1.07998 * 119.96229 * 179.97438 * 24 23 16 46 46 H 1.09002 * 113.75838 * 270.37219 * 25 11 10 47 47 H 1.09002 * 113.76303 * 139.00391 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.1618 -3.7402 0.0005 11 7 1.2179 -4.3106 0.9869 12 6 1.9374 -4.9921 2.0712 13 6 0.9707 -5.3430 3.1727 14 6 0.7451 -4.4489 4.2032 15 6 -0.1444 -4.7650 5.2114 16 6 -0.8042 -5.9873 5.1953 17 7 -1.7006 -6.3123 6.2161 18 6 -3.0210 -6.6497 5.6692 19 6 -3.9318 -7.1391 6.7974 20 6 -4.0624 -6.0395 7.8548 21 6 -2.6691 -5.6727 8.3731 22 6 -1.7948 -5.2257 7.1994 23 6 -0.5709 -6.8855 4.1616 24 6 0.3152 -6.5605 3.1535 25 6 0.7984 -2.9532 1.4000 26 1 -0.4851 0.8399 -0.0004 27 1 0.4611 -2.5351 -0.7496 28 1 2.1783 -4.2728 -0.9504 29 1 3.1577 -3.5543 0.4025 30 1 2.3962 -5.9030 1.6865 31 1 2.7118 -4.3331 2.4637 32 1 1.2620 -3.5007 4.2176 33 1 -0.3235 -4.0644 6.0136 34 1 -3.4591 -5.7654 5.2064 35 1 -2.9144 -7.4357 4.9216 36 1 -3.5012 -8.0314 7.2516 37 1 -4.9166 -7.3746 6.3938 38 1 -4.6753 -6.3996 8.6811 39 1 -4.5289 -5.1602 7.4103 40 1 -2.2185 -6.5420 8.8522 41 1 -2.7517 -4.8604 9.0953 42 1 -0.7977 -4.9776 7.5631 43 1 -2.2386 -4.3482 6.7294 44 1 -1.0825 -7.8364 4.1460 45 1 0.4974 -7.2585 2.3497 46 1 1.3956 -2.5369 2.2113 47 1 -0.2744 -2.8569 1.5673 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826990557.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:50 Heat of formation + Delta-G solvation = 40.203388 kcal Electronic energy + Delta-G solvation = -24092.370231 eV Core-core repulsion = 20853.594715 eV Total energy + Delta-G solvation = -3238.775516 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.42124 -40.48859 -38.72576 -35.22814 -34.52711 -32.58032 -32.13438 -31.32151 -29.37778 -27.20926 -26.68840 -25.38284 -24.86316 -23.64379 -22.65665 -21.67600 -20.57850 -20.37777 -18.68728 -18.43710 -16.81365 -16.78445 -16.44986 -16.20138 -15.94133 -15.81087 -15.45144 -15.04434 -14.96776 -14.73006 -14.47291 -14.16406 -14.02205 -13.89668 -13.50002 -13.32171 -13.18102 -12.97166 -12.88048 -12.65388 -12.36434 -12.21975 -12.19378 -11.82891 -11.71906 -11.51653 -11.40742 -11.30469 -11.17250 -10.95852 -10.54648 -10.47304 -9.84862 -9.58803 -8.70676 -8.15387 -6.27316 0.40268 0.49081 1.41494 1.42880 1.50761 2.41273 2.59769 2.91612 3.13740 3.40775 3.75567 3.81863 3.87240 3.97534 4.00898 4.05777 4.16655 4.26871 4.35037 4.40628 4.47342 4.48040 4.49856 4.58401 4.59917 4.70309 4.71486 4.76743 4.82928 4.86788 4.89235 4.93308 4.99534 5.08850 5.14284 5.18922 5.21784 5.22809 5.32701 5.37090 5.43791 5.55911 5.61809 5.78597 5.82722 5.84689 6.06670 6.29306 6.34079 6.39141 6.81696 7.41044 8.93798 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.018744 B = 0.003106 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.476386 B = 9011.594844 C = 9858.809352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.957 3.043 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.533 4.533 8 H 0.059 0.941 9 C 0.019 3.981 10 C 0.011 3.989 11 N -0.483 5.483 12 C 0.064 3.936 13 C -0.109 4.109 14 C -0.097 4.097 15 C -0.178 4.178 16 C 0.101 3.899 17 N -0.489 5.489 18 C 0.053 3.947 19 C -0.113 4.113 20 C -0.124 4.124 21 C -0.113 4.113 22 C 0.045 3.955 23 C -0.144 4.144 24 C -0.081 4.081 25 C 0.034 3.966 26 H 0.262 0.738 27 H 0.024 0.976 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.038 0.962 32 H 0.110 0.890 33 H 0.133 0.867 34 H 0.029 0.971 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.036 0.964 44 H 0.141 0.859 45 H 0.137 0.863 46 H 0.047 0.953 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.145 -14.727 16.053 22.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.782 3.218 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.571 4.571 8 H 0.077 0.923 9 C 0.000 4.000 10 C -0.117 4.117 11 N -0.205 5.205 12 C -0.064 4.064 13 C -0.110 4.110 14 C -0.117 4.117 15 C -0.199 4.199 16 C 0.004 3.996 17 N -0.205 5.205 18 C -0.072 4.072 19 C -0.151 4.151 20 C -0.161 4.161 21 C -0.151 4.151 22 C -0.081 4.081 23 C -0.164 4.164 24 C -0.100 4.100 25 C -0.095 4.095 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.056 0.944 32 H 0.128 0.872 33 H 0.151 0.849 34 H 0.048 0.952 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.055 0.945 44 H 0.159 0.841 45 H 0.155 0.845 46 H 0.065 0.935 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.671 -15.546 16.153 23.125 hybrid contribution 0.756 2.398 -0.239 2.526 sum -4.915 -13.148 15.915 21.220 Atomic orbital electron populations 1.70095 1.07548 1.27596 1.50821 1.25836 0.95602 1.02711 0.94373 0.85633 0.78379 0.78742 0.79049 1.19307 1.21056 1.19437 1.21408 0.93023 0.91560 1.51129 0.92254 1.20302 0.94222 0.92347 0.93089 1.23970 0.95234 0.95826 0.96665 1.68524 1.27035 1.15225 1.09760 1.21538 0.93923 0.99846 0.91091 1.19745 1.00136 0.95472 0.95662 1.21014 0.97961 0.98503 0.94181 1.21362 1.01250 0.96404 1.00849 1.19065 0.96107 0.92755 0.91718 1.59161 1.09296 1.39370 1.12630 1.22332 0.86747 1.00199 0.97896 1.21616 0.99083 0.99015 0.95369 1.21628 0.96845 0.98587 0.99070 1.21610 0.94992 1.02262 0.96224 1.22350 1.01207 0.91351 0.93236 1.20917 1.01064 0.99930 0.94491 1.21039 0.95079 0.95951 0.97948 1.23648 0.98064 0.88385 0.99392 0.92900 0.95767 0.90041 0.91792 0.88882 0.94363 0.87218 0.84919 0.95212 0.89720 0.90716 0.89783 0.89982 0.92524 0.90923 0.89898 0.90172 0.94543 0.84118 0.84536 0.93464 0.94203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.78 13.27 21.45 0.28 -54.49 16 2 C 0.01 0.79 5.46 84.65 0.46 1.25 16 3 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.53 -29.49 8.77 25.60 0.22 -29.26 16 8 H 0.06 3.17 7.81 -2.91 -0.02 3.14 16 9 C 0.02 1.01 3.61 -10.89 -0.04 0.97 16 10 C 0.01 0.48 7.53 86.41 0.65 1.13 16 11 N -0.48 -19.83 6.25 -912.59 -5.71 -25.53 16 12 C 0.06 2.17 4.97 85.56 0.43 2.60 16 13 C -0.11 -3.54 5.12 -19.84 -0.10 -3.64 16 14 C -0.10 -3.18 8.97 22.25 0.20 -2.98 16 15 C -0.18 -5.16 8.82 22.40 0.20 -4.96 16 16 C 0.10 2.71 5.64 38.21 0.22 2.92 16 17 N -0.49 -10.87 4.70 -695.42 -3.27 -14.13 16 18 C 0.05 1.03 5.26 86.32 0.45 1.48 16 19 C -0.11 -1.59 6.09 30.64 0.19 -1.40 16 20 C -0.12 -1.63 6.00 30.67 0.18 -1.45 16 21 C -0.11 -1.64 6.09 30.65 0.19 -1.45 16 22 C 0.05 0.89 4.15 86.32 0.36 1.25 16 23 C -0.14 -3.73 9.16 22.40 0.21 -3.53 16 24 C -0.08 -2.30 9.69 22.25 0.22 -2.09 16 25 C 0.03 1.65 6.50 86.41 0.56 2.21 16 26 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 27 H 0.02 1.41 8.13 -2.39 -0.02 1.39 16 28 H 0.08 3.15 8.14 -2.38 -0.02 3.13 16 29 H 0.06 2.57 7.74 -2.39 -0.02 2.55 16 30 H 0.09 2.74 8.08 -2.39 -0.02 2.72 16 31 H 0.04 1.33 7.63 -2.39 -0.02 1.31 16 32 H 0.11 3.70 7.45 -2.91 -0.02 3.68 16 33 H 0.13 3.42 5.81 -2.91 -0.02 3.41 16 34 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.08 1.55 6.70 -2.39 -0.02 1.54 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 39 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.08 1.57 6.98 -2.39 -0.02 1.55 16 43 H 0.04 0.78 7.73 -2.39 -0.02 0.76 16 44 H 0.14 2.99 7.15 -2.92 -0.02 2.97 16 45 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 46 H 0.05 2.28 7.06 -2.39 -0.02 2.26 16 47 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -62.64 364.85 -1.15 -63.79 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.93 Total: 21.78 kcal Atomic # 6 Polarization: -41.53 SS G_CDS: 4.59 Total: -36.95 kcal Atomic # 7 Polarization: -85.47 SS G_CDS: -8.69 Total: -94.16 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -62.64 -1.15 -63.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826990557.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.991 kcal (2) G-P(sol) polarization free energy of solvation -62.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds