Wall clock time and date at job start Tue Mar 31 2020 08:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47462 * 2 1 4 4 F 1.39903 * 109.46400 * 240.00265 * 2 1 3 5 5 C 1.50696 * 109.47304 * 120.00883 * 2 1 3 6 6 O 1.21283 * 120.00127 * 354.99448 * 5 2 1 7 7 N 1.34779 * 120.00164 * 174.99941 * 5 2 1 8 8 C 1.46495 * 120.00302 * 180.02562 * 7 5 2 9 9 C 1.52998 * 109.47317 * 179.97438 * 8 7 5 10 10 H 1.09008 * 109.58173 * 59.77042 * 9 8 7 11 11 C 1.53193 * 109.70521 * 180.12062 * 9 8 7 12 12 C 1.53041 * 109.30986 * 174.48939 * 11 9 8 13 13 C 1.53035 * 109.54381 * 298.63905 * 12 11 9 14 14 C 1.52998 * 109.49912 * 181.31751 * 13 12 11 15 15 C 1.53006 * 109.49568 * 301.38297 * 13 12 11 16 16 C 1.52761 * 109.38303 * 61.24059 * 13 12 11 17 17 N 1.46923 * 109.58745 * 299.48590 * 9 8 7 18 18 C 1.36931 * 120.62808 * 6.44221 * 17 9 8 19 19 H 1.08007 * 119.99966 * 304.67307 * 18 17 9 20 20 C 1.38816 * 120.00472 * 124.67950 * 18 17 9 21 21 N 1.31618 * 120.00189 * 156.13324 * 20 18 17 22 22 Si 1.86794 * 119.99818 * 336.13952 * 20 18 17 23 23 H 1.48503 * 109.46911 * 275.63959 * 22 20 18 24 24 H 1.48507 * 109.47473 * 35.63641 * 22 20 18 25 25 H 1.48500 * 109.47319 * 155.63994 * 22 20 18 26 26 H 1.08999 * 109.46600 * 299.99480 * 1 2 3 27 27 H 1.08998 * 109.47067 * 59.99366 * 1 2 3 28 28 H 1.09003 * 109.47204 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47000 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.46948 * 300.01140 * 3 2 1 31 31 H 1.09008 * 109.46749 * 60.00464 * 3 2 1 32 32 H 0.97002 * 119.99624 * 359.97438 * 7 5 2 33 33 H 1.08996 * 109.47537 * 59.99266 * 8 7 5 34 34 H 1.09005 * 109.46769 * 299.99163 * 8 7 5 35 35 H 1.08997 * 109.49915 * 294.45095 * 11 9 8 36 36 H 1.09008 * 109.49017 * 54.51238 * 11 9 8 37 37 H 1.09000 * 109.45890 * 58.66459 * 12 11 9 38 38 H 1.09005 * 109.45202 * 178.61853 * 12 11 9 39 39 H 1.08994 * 109.46941 * 60.00213 * 14 13 12 40 40 H 1.09006 * 109.46934 * 180.02562 * 14 13 12 41 41 H 1.08995 * 109.46924 * 300.00236 * 14 13 12 42 42 H 1.09000 * 109.47125 * 60.00344 * 15 13 12 43 43 H 1.09001 * 109.46571 * 179.97438 * 15 13 12 44 44 H 1.08993 * 109.47573 * 299.99393 * 15 13 12 45 45 H 1.09001 * 109.51557 * 185.70678 * 16 13 12 46 46 H 1.09005 * 109.43296 * 65.42365 * 16 13 12 47 47 H 0.96997 * 120.00075 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 9 1.9962 -0.6595 -1.1424 5 6 2.0324 -0.7106 1.2303 6 8 1.2481 -1.0916 2.0733 7 7 3.3533 -0.9226 1.3940 8 6 3.8416 -1.6138 2.5897 9 6 5.3664 -1.7241 2.5281 10 1 5.8031 -0.7265 2.4784 11 6 5.8827 -2.4490 3.7750 12 6 7.3901 -2.6764 3.6405 13 6 7.6681 -3.5568 2.4200 14 6 9.1726 -3.8105 2.3054 15 6 6.9356 -4.8911 2.5754 16 6 7.1713 -2.8492 1.1606 17 7 5.7570 -2.4927 1.3385 18 6 4.8200 -2.8743 0.4158 19 1 3.9571 -3.4446 0.7266 20 6 4.9791 -2.5283 -0.9191 21 7 4.3941 -3.2413 -1.8581 22 14 6.0238 -1.0509 -1.3829 23 1 5.2027 0.1833 -1.2943 24 1 7.1756 -0.9469 -0.4512 25 1 6.5236 -1.2143 -2.7716 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6768 1.9563 0.8901 32 1 3.9806 -0.6181 0.7196 33 1 3.4071 -2.6124 2.6351 34 1 3.5533 -1.0513 3.4777 35 1 5.6836 -1.8414 4.6577 36 1 5.3767 -3.4096 3.8729 37 1 7.8925 -1.7169 3.5181 38 1 7.7642 -3.1702 4.5373 39 1 9.5255 -4.3149 3.2049 40 1 9.3701 -4.4373 1.4357 41 1 9.6938 -2.8598 2.1937 42 1 5.8637 -4.7099 2.6557 43 1 7.1336 -5.5176 1.7056 44 1 7.2872 -5.3961 3.4749 45 1 7.2754 -3.5149 0.3038 46 1 7.7582 -1.9453 0.9971 47 1 4.5056 -2.9998 -2.7908 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098861828.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:28 Heat of formation + Delta-G solvation = -81.428595 kcal Electronic energy + Delta-G solvation = -27404.037437 eV Core-core repulsion = 23729.218337 eV Total energy + Delta-G solvation = -3674.819100 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.195 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.26906 -39.36999 -38.54136 -35.23606 -33.30054 -33.06763 -32.16427 -30.76181 -27.82832 -27.12287 -26.74475 -25.51158 -24.21636 -22.44653 -22.08639 -20.18977 -19.25757 -18.24244 -17.34385 -16.37195 -15.75516 -15.60793 -15.24331 -14.72603 -14.47014 -14.17903 -13.92801 -13.85883 -13.52493 -13.39971 -12.95727 -12.67420 -12.64725 -12.41068 -12.30355 -12.08956 -11.87112 -11.80836 -11.63055 -11.51230 -11.48937 -11.32315 -11.17769 -10.80689 -10.77130 -10.61062 -10.58598 -10.34053 -9.92221 -9.71881 -9.68922 -9.50619 -9.12414 -8.52710 -8.21394 -6.46611 -6.06069 -3.64548 3.05989 3.25673 3.40500 3.43195 3.72436 4.47536 4.73990 4.76043 4.87494 5.09656 5.14185 5.18023 5.30368 5.35108 5.40549 5.60026 5.62258 5.71378 5.75334 5.83427 5.88474 5.99274 6.04407 6.07375 6.08843 6.17501 6.22042 6.29008 6.31609 6.33100 6.35168 6.37142 6.41837 6.55271 6.65327 6.77213 6.79634 6.89040 6.99392 7.12541 7.16430 8.06374 8.18310 8.53430 8.76914 8.97856 9.63110 10.18406 11.07228 Molecular weight = 300.20amu Principal moments of inertia in cm(-1) A = 0.017749 B = 0.006339 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.132884 B = 4415.822835 C = 5231.136649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.099 3.901 3 C -0.173 4.173 4 F -0.182 7.182 5 C 0.497 3.503 6 O -0.552 6.552 7 N -0.676 5.676 8 C 0.138 3.862 9 C 0.153 3.847 10 H 0.031 0.969 11 C -0.129 4.129 12 C -0.096 4.096 13 C -0.087 4.087 14 C -0.137 4.137 15 C -0.126 4.126 16 C 0.154 3.846 17 N -0.595 5.595 18 C -0.277 4.277 19 H 0.069 0.931 20 C 0.066 3.934 21 N -0.874 5.874 22 Si 0.840 3.160 23 H -0.283 1.283 24 H -0.257 1.257 25 H -0.295 1.295 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.409 0.591 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.068 0.932 43 H 0.047 0.953 44 H 0.033 0.967 45 H 0.064 0.936 46 H 0.022 0.978 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.921 6.367 6.873 9.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.078 3.922 3 C -0.230 4.230 4 F -0.162 7.162 5 C 0.280 3.720 6 O -0.431 6.431 7 N -0.325 5.325 8 C 0.014 3.986 9 C 0.047 3.953 10 H 0.049 0.951 11 C -0.169 4.169 12 C -0.133 4.133 13 C -0.089 4.089 14 C -0.195 4.195 15 C -0.183 4.183 16 C 0.029 3.971 17 N -0.320 5.320 18 C -0.406 4.406 19 H 0.086 0.914 20 C -0.139 4.139 21 N -0.511 5.511 22 Si 0.667 3.333 23 H -0.209 1.209 24 H -0.182 1.182 25 H -0.222 1.222 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.247 0.753 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.053 0.947 45 H 0.083 0.917 46 H 0.040 0.960 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.346 6.030 7.229 9.509 hybrid contribution 1.019 0.856 -0.977 1.651 sum 2.365 6.886 6.252 9.597 Atomic orbital electron populations 1.22112 0.91652 1.04346 1.02954 1.21112 0.96300 0.92616 0.82219 1.22398 1.02782 0.93946 1.03901 1.93026 1.90046 1.82351 1.50778 1.20597 0.83285 0.80453 0.87677 1.90634 1.55579 1.52326 1.44566 1.45903 1.06746 1.56210 1.23682 1.21251 0.94027 0.97396 0.85928 1.20936 0.91786 0.93819 0.88773 0.95140 1.21974 0.96258 1.01180 0.97451 1.21406 0.95927 0.98939 0.97059 1.21005 0.94065 0.96322 0.97491 1.21811 0.95963 1.00803 1.00938 1.21715 1.01622 0.95412 0.99522 1.21323 0.85317 0.95911 0.94542 1.44229 1.03664 1.61516 1.22618 1.18423 1.04519 1.31057 0.86577 0.91391 1.25837 0.95455 0.96374 0.96237 1.69878 1.44013 1.36931 1.00293 0.87446 0.82075 0.85910 0.77886 1.20938 1.18195 1.22167 0.90345 0.91309 0.90768 0.91139 0.90497 0.90353 0.75348 0.91121 0.92583 0.92892 0.91273 0.92923 0.93192 0.93466 0.92928 0.93359 0.91289 0.93388 0.94749 0.91728 0.95966 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 8.23 37.16 0.31 -2.00 16 2 C 0.10 1.77 1.53 -91.77 -0.14 1.63 16 3 C -0.17 -2.45 8.88 37.16 0.33 -2.12 16 4 F -0.18 -3.94 16.79 2.25 0.04 -3.90 16 5 C 0.50 10.13 6.82 -10.99 -0.07 10.05 16 6 O -0.55 -12.17 15.98 5.56 0.09 -12.08 16 7 N -0.68 -13.83 4.14 -60.30 -0.25 -14.08 16 8 C 0.14 2.63 4.54 -4.05 -0.02 2.61 16 9 C 0.15 2.80 3.00 -67.60 -0.20 2.60 16 10 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 11 C -0.13 -2.01 5.04 -26.61 -0.13 -2.14 16 12 C -0.10 -1.42 4.71 -26.69 -0.13 -1.54 16 13 C -0.09 -1.42 0.77 -154.61 -0.12 -1.54 16 14 C -0.14 -1.93 8.48 37.16 0.32 -1.61 16 15 C -0.13 -2.10 7.98 37.16 0.30 -1.80 16 16 C 0.15 3.08 3.37 -3.93 -0.01 3.06 16 17 N -0.60 -12.66 1.60 -165.03 -0.26 -12.92 16 18 C -0.28 -6.98 6.40 -15.06 -0.10 -7.08 16 19 H 0.07 1.98 7.38 -52.48 -0.39 1.59 16 20 C 0.07 1.74 5.06 -17.43 -0.09 1.66 16 21 N -0.87 -25.24 13.97 55.49 0.78 -24.46 16 22 Si 0.84 20.03 26.38 -169.99 -4.48 15.55 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.26 -5.85 5.12 56.52 0.29 -5.57 16 25 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 26 H 0.08 1.07 8.05 -51.93 -0.42 0.65 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.07 1.06 7.92 -51.93 -0.41 0.65 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 32 H 0.41 8.76 5.63 -40.82 -0.23 8.53 16 33 H 0.07 1.50 7.52 -51.93 -0.39 1.11 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.13 6.34 -51.92 -0.33 0.80 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 1.30 5.98 -51.93 -0.31 0.99 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 1.42 7.77 -51.93 -0.40 1.02 16 46 H 0.02 0.46 6.58 -51.93 -0.34 0.12 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -29.05 358.47 -6.85 -35.89 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -8.39 Total: 8.83 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 0.23 Total: 1.77 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: 0.26 Total: -51.47 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.09 Total: -12.08 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.04 Total: -3.90 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.48 Total: 15.55 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.05 -6.85 -35.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098861828.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.535 kcal (2) G-P(sol) polarization free energy of solvation -29.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds