Wall clock time and date at job start Tue Mar 31 2020 08:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47462 * 2 1 4 4 F 1.39903 * 109.46400 * 240.00265 * 2 1 3 5 5 C 1.50696 * 109.47304 * 120.00883 * 2 1 3 6 6 O 1.21283 * 120.00127 * 354.99448 * 5 2 1 7 7 N 1.34779 * 120.00164 * 174.99941 * 5 2 1 8 8 C 1.46495 * 120.00302 * 180.02562 * 7 5 2 9 9 C 1.52998 * 109.47317 * 179.97438 * 8 7 5 10 10 H 1.09008 * 109.58173 * 59.77042 * 9 8 7 11 11 C 1.53193 * 109.70521 * 180.12062 * 9 8 7 12 12 C 1.53041 * 109.30986 * 174.48939 * 11 9 8 13 13 C 1.53035 * 109.54381 * 298.63905 * 12 11 9 14 14 C 1.52998 * 109.49912 * 181.31751 * 13 12 11 15 15 C 1.53006 * 109.49568 * 301.38297 * 13 12 11 16 16 C 1.52761 * 109.38303 * 61.24059 * 13 12 11 17 17 N 1.46923 * 109.58745 * 299.48590 * 9 8 7 18 18 C 1.36931 * 120.62808 * 6.44221 * 17 9 8 19 19 H 1.08007 * 119.99966 * 304.67307 * 18 17 9 20 20 C 1.38816 * 120.00472 * 124.67950 * 18 17 9 21 21 N 1.31618 * 120.00189 * 156.13324 * 20 18 17 22 22 Si 1.86794 * 119.99818 * 336.13952 * 20 18 17 23 23 H 1.48503 * 109.46911 * 275.63959 * 22 20 18 24 24 H 1.48507 * 109.47473 * 35.63641 * 22 20 18 25 25 H 1.48500 * 109.47319 * 155.63994 * 22 20 18 26 26 H 1.08999 * 109.46600 * 299.99480 * 1 2 3 27 27 H 1.08998 * 109.47067 * 59.99366 * 1 2 3 28 28 H 1.09003 * 109.47204 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47000 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.46948 * 300.01140 * 3 2 1 31 31 H 1.09008 * 109.46749 * 60.00464 * 3 2 1 32 32 H 0.97002 * 119.99624 * 359.97438 * 7 5 2 33 33 H 1.08996 * 109.47537 * 59.99266 * 8 7 5 34 34 H 1.09005 * 109.46769 * 299.99163 * 8 7 5 35 35 H 1.08997 * 109.49915 * 294.45095 * 11 9 8 36 36 H 1.09008 * 109.49017 * 54.51238 * 11 9 8 37 37 H 1.09000 * 109.45890 * 58.66459 * 12 11 9 38 38 H 1.09005 * 109.45202 * 178.61853 * 12 11 9 39 39 H 1.08994 * 109.46941 * 60.00213 * 14 13 12 40 40 H 1.09006 * 109.46934 * 180.02562 * 14 13 12 41 41 H 1.08995 * 109.46924 * 300.00236 * 14 13 12 42 42 H 1.09000 * 109.47125 * 60.00344 * 15 13 12 43 43 H 1.09001 * 109.46571 * 179.97438 * 15 13 12 44 44 H 1.08993 * 109.47573 * 299.99393 * 15 13 12 45 45 H 1.09001 * 109.51557 * 185.70678 * 16 13 12 46 46 H 1.09005 * 109.43296 * 65.42365 * 16 13 12 47 47 H 0.96997 * 120.00075 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 9 1.9962 -0.6595 -1.1424 5 6 2.0324 -0.7106 1.2303 6 8 1.2481 -1.0916 2.0733 7 7 3.3533 -0.9226 1.3940 8 6 3.8416 -1.6138 2.5897 9 6 5.3664 -1.7241 2.5281 10 1 5.8031 -0.7265 2.4784 11 6 5.8827 -2.4490 3.7750 12 6 7.3901 -2.6764 3.6405 13 6 7.6681 -3.5568 2.4200 14 6 9.1726 -3.8105 2.3054 15 6 6.9356 -4.8911 2.5754 16 6 7.1713 -2.8492 1.1606 17 7 5.7570 -2.4927 1.3385 18 6 4.8200 -2.8743 0.4158 19 1 3.9571 -3.4446 0.7266 20 6 4.9791 -2.5283 -0.9191 21 7 4.3941 -3.2413 -1.8581 22 14 6.0238 -1.0509 -1.3829 23 1 5.2027 0.1833 -1.2943 24 1 7.1756 -0.9469 -0.4512 25 1 6.5236 -1.2143 -2.7716 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6768 1.9563 0.8901 32 1 3.9806 -0.6181 0.7196 33 1 3.4071 -2.6124 2.6351 34 1 3.5533 -1.0513 3.4777 35 1 5.6836 -1.8414 4.6577 36 1 5.3767 -3.4096 3.8729 37 1 7.8925 -1.7169 3.5181 38 1 7.7642 -3.1702 4.5373 39 1 9.5255 -4.3149 3.2049 40 1 9.3701 -4.4373 1.4357 41 1 9.6938 -2.8598 2.1937 42 1 5.8637 -4.7099 2.6557 43 1 7.1336 -5.5176 1.7056 44 1 7.2872 -5.3961 3.4749 45 1 7.2754 -3.5149 0.3038 46 1 7.7582 -1.9453 0.9971 47 1 4.5056 -2.9998 -2.7908 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098861828.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:27 Heat of formation + Delta-G solvation = -98.571993 kcal Electronic energy + Delta-G solvation = -27404.780830 eV Core-core repulsion = 23729.218337 eV Total energy + Delta-G solvation = -3675.562493 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.84104 -40.94040 -40.05068 -36.77024 -34.90138 -34.65818 -33.71357 -32.49008 -29.19539 -28.31905 -28.05772 -27.29020 -25.65971 -24.10865 -23.44916 -21.80939 -20.79432 -19.75160 -18.93489 -18.11124 -17.30673 -17.14291 -16.88428 -16.39833 -15.96127 -15.64206 -15.47056 -15.36771 -15.10543 -14.79968 -14.61251 -14.31925 -14.09423 -13.92154 -13.48449 -13.30785 -13.27672 -13.08550 -13.04633 -12.99090 -12.88166 -12.77109 -12.63542 -12.58852 -12.25468 -12.11273 -11.98043 -11.95507 -11.49158 -11.31201 -11.11575 -10.96060 -10.69678 -10.50181 -9.92376 -8.30125 -8.11580 -5.70005 1.33212 1.40989 1.45174 1.51194 2.21789 2.47092 3.08615 3.36555 3.43037 3.47975 3.72249 3.83226 3.92273 3.97559 4.10942 4.27431 4.37451 4.46482 4.54353 4.58157 4.61441 4.65836 4.70298 4.79118 4.87564 4.91826 4.97205 5.00651 5.01740 5.06646 5.09897 5.11225 5.13426 5.15868 5.22411 5.32065 5.46334 5.49051 5.57040 5.60519 5.77305 6.03062 6.41816 6.53283 7.12563 7.14267 7.64475 8.22862 9.03219 Molecular weight = 300.20amu Principal moments of inertia in cm(-1) A = 0.017749 B = 0.006339 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.132884 B = 4415.822835 C = 5231.136649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.086 3.914 3 C -0.166 4.166 4 F -0.208 7.208 5 C 0.488 3.512 6 O -0.574 6.574 7 N -0.681 5.681 8 C 0.139 3.861 9 C 0.152 3.848 10 H 0.047 0.953 11 C -0.124 4.124 12 C -0.091 4.091 13 C -0.085 4.085 14 C -0.132 4.132 15 C -0.120 4.120 16 C 0.153 3.847 17 N -0.604 5.604 18 C -0.244 4.244 19 H 0.016 0.984 20 C 0.021 3.979 21 N -0.928 5.928 22 Si 0.891 3.109 23 H -0.271 1.271 24 H -0.236 1.236 25 H -0.310 1.310 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.404 0.596 33 H 0.037 0.963 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.044 0.956 41 H 0.058 0.942 42 H 0.040 0.960 43 H 0.029 0.971 44 H 0.061 0.939 45 H 0.033 0.967 46 H 0.027 0.973 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.657 8.726 9.069 13.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.065 3.935 3 C -0.223 4.223 4 F -0.189 7.189 5 C 0.272 3.728 6 O -0.456 6.456 7 N -0.329 5.329 8 C 0.015 3.985 9 C 0.047 3.953 10 H 0.064 0.936 11 C -0.163 4.163 12 C -0.128 4.128 13 C -0.086 4.086 14 C -0.190 4.190 15 C -0.177 4.177 16 C 0.028 3.972 17 N -0.330 5.330 18 C -0.374 4.374 19 H 0.033 0.967 20 C -0.179 4.179 21 N -0.568 5.568 22 Si 0.718 3.282 23 H -0.197 1.197 24 H -0.160 1.160 25 H -0.238 1.238 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.241 0.759 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.080 0.920 45 H 0.051 0.949 46 H 0.045 0.955 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.109 8.408 9.472 13.041 hybrid contribution 0.431 0.013 -1.574 1.632 sum 3.541 8.421 7.898 12.076 Atomic orbital electron populations 1.22123 0.89556 1.03605 1.05214 1.21534 0.98030 0.94118 0.79836 1.22410 1.02131 0.91374 1.06405 1.92973 1.90554 1.83269 1.52132 1.21184 0.83045 0.80185 0.88391 1.90607 1.55939 1.53273 1.45744 1.46006 1.06936 1.56093 1.23875 1.21317 0.94647 0.95984 0.86560 1.21107 0.91198 0.94400 0.88589 0.93554 1.21934 0.96878 1.00665 0.96867 1.21402 0.95091 0.99329 0.97004 1.20955 0.95611 0.95689 0.96375 1.21759 0.93817 1.01579 1.01838 1.21644 1.00007 0.96002 1.00029 1.21310 0.84411 0.95791 0.95646 1.44280 1.03566 1.62268 1.22874 1.17929 1.03407 1.28917 0.87181 0.96682 1.26274 0.97029 0.98476 0.96098 1.70017 1.47351 1.39074 1.00397 0.86608 0.81416 0.83207 0.77019 1.19661 1.15980 1.23766 0.88662 0.88419 0.93033 0.92148 0.88086 0.87794 0.75918 0.94417 0.90050 0.89752 0.92614 0.91732 0.90468 0.91149 0.93641 0.92287 0.94118 0.95167 0.91990 0.94882 0.95541 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.30 8.23 71.98 0.59 -3.71 16 2 C 0.09 3.04 1.53 -11.54 -0.02 3.02 16 3 C -0.17 -4.33 8.88 71.98 0.64 -3.69 16 4 F -0.21 -9.24 16.79 44.97 0.76 -8.48 16 5 C 0.49 20.09 6.82 87.66 0.60 20.68 16 6 O -0.57 -25.71 15.98 -3.04 -0.05 -25.75 16 7 N -0.68 -28.07 4.14 -463.07 -1.92 -29.99 16 8 C 0.14 5.27 4.54 86.38 0.39 5.66 16 9 C 0.15 5.35 3.00 44.98 0.14 5.49 16 10 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 11 C -0.12 -3.51 5.04 30.67 0.15 -3.36 16 12 C -0.09 -2.31 4.71 30.62 0.14 -2.17 16 13 C -0.08 -2.57 0.77 -52.25 -0.04 -2.61 16 14 C -0.13 -3.27 8.48 71.98 0.61 -2.66 16 15 C -0.12 -3.91 7.98 71.98 0.57 -3.33 16 16 C 0.15 5.97 3.37 86.22 0.29 6.26 16 17 N -0.60 -25.73 1.60 -676.03 -1.08 -26.81 16 18 C -0.24 -12.84 6.40 84.04 0.54 -12.31 16 19 H 0.02 0.97 7.38 -2.91 -0.02 0.95 16 20 C 0.02 1.17 5.06 84.86 0.43 1.60 16 21 N -0.93 -56.49 13.97 21.65 0.30 -56.18 16 22 Si 0.89 41.85 26.38 68.60 1.81 43.66 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 24 H -0.24 -10.13 5.12 99.48 0.51 -9.62 16 25 H -0.31 -15.30 7.11 99.48 0.71 -14.59 16 26 H 0.09 2.43 8.05 -2.39 -0.02 2.41 16 27 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.06 1.70 7.92 -2.39 -0.02 1.68 16 30 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 32 H 0.40 17.31 5.63 -92.71 -0.52 16.79 16 33 H 0.04 1.67 7.52 -2.39 -0.02 1.65 16 34 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.06 1.75 6.34 -2.38 -0.02 1.73 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.04 1.54 5.98 -2.39 -0.01 1.53 16 43 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.03 1.47 7.77 -2.39 -0.02 1.46 16 46 H 0.03 1.02 6.58 -2.38 -0.02 1.01 16 47 H 0.26 15.29 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -67.62 358.47 5.08 -62.54 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: 0.22 Total: 32.13 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 5.04 Total: 8.89 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -2.69 Total: -112.98 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.05 Total: -25.75 kcal Atomic # 9 Polarization: -9.24 SS G_CDS: 0.76 Total: -8.48 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.81 Total: 43.66 kcal Total: -67.62 5.08 -62.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098861828.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.028 kcal (2) G-P(sol) polarization free energy of solvation -67.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds