Wall clock time and date at job start Tue Mar 31 2020 08:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36357 * 119.92121 * 2 1 4 4 C 1.40861 * 119.83580 * 179.97438 * 3 2 1 5 5 C 1.41139 * 120.15647 * 179.97438 * 4 3 2 6 6 H 1.08004 * 119.99905 * 334.54178 * 5 4 3 7 7 C 1.39864 * 120.00160 * 154.54741 * 5 4 3 8 8 N 1.30903 * 120.00289 * 343.03849 * 7 5 4 9 9 Si 1.86810 * 119.99799 * 163.04065 * 7 5 4 10 10 H 1.48500 * 109.46998 * 89.99834 * 9 7 5 11 11 H 1.48496 * 109.46739 * 209.99823 * 9 7 5 12 12 H 1.48501 * 109.46939 * 329.99685 * 9 7 5 13 13 C 1.40905 * 119.69252 * 0.02562 * 4 3 2 14 14 C 1.36327 * 119.83239 * 359.76136 * 13 4 3 15 15 C 1.39540 * 119.91689 * 180.02562 * 2 1 3 16 16 N 1.38864 * 119.84165 * 359.97438 * 15 2 1 17 17 C 1.46503 * 119.99931 * 180.02562 * 16 15 2 18 18 C 1.52997 * 109.47030 * 180.02562 * 17 16 15 19 19 C 1.53390 * 110.11521 * 299.72267 * 18 17 16 20 20 C 1.54776 * 107.99037 * 179.57350 * 19 18 17 21 21 N 1.46946 * 109.55548 * 0.73435 * 20 19 18 22 22 C 1.46899 * 111.05852 * 61.54559 * 21 20 19 23 23 C 1.53145 * 109.37176 * 298.00623 * 22 21 20 24 24 C 1.46947 * 110.96316 * 297.50185 * 21 20 19 25 25 C 1.53121 * 109.35416 * 62.09113 * 24 21 20 26 26 H 1.09006 * 109.47289 * 269.98192 * 1 2 3 27 27 H 1.09000 * 109.46898 * 29.97803 * 1 2 3 28 28 H 1.09001 * 109.47572 * 149.97647 * 1 2 3 29 29 H 1.07998 * 120.08006 * 359.97438 * 3 2 1 30 30 H 0.96993 * 120.00264 * 179.97438 * 8 7 5 31 31 H 1.07998 * 120.08427 * 179.97438 * 13 4 3 32 32 H 1.07997 * 119.91612 * 180.25260 * 14 13 4 33 33 H 0.96991 * 120.00213 * 0.02562 * 16 15 2 34 34 H 1.09004 * 109.46724 * 300.00194 * 17 16 15 35 35 H 1.09002 * 109.47227 * 59.99990 * 17 16 15 36 36 H 1.09005 * 109.57249 * 300.16938 * 19 18 17 37 37 H 1.09004 * 109.57548 * 60.54953 * 19 18 17 38 38 H 1.08994 * 109.72594 * 240.49681 * 20 19 18 39 39 H 1.09005 * 109.07299 * 120.55994 * 20 19 18 40 40 H 1.09000 * 109.48797 * 178.03218 * 22 21 20 41 41 H 1.09003 * 109.50720 * 57.98306 * 22 21 20 42 42 H 1.09001 * 109.57418 * 240.19813 * 23 22 21 43 43 H 1.08992 * 109.68636 * 119.87058 * 23 22 21 44 44 H 1.09004 * 109.48980 * 182.05214 * 24 21 20 45 45 H 1.08997 * 109.49266 * 302.10027 * 24 21 20 46 46 H 1.09004 * 109.57256 * 240.12770 * 25 24 21 47 47 H 1.09001 * 109.58091 * 119.74803 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.1818 0.0000 4 6 3.5958 1.1797 0.0005 5 6 4.3066 2.3990 0.0000 6 1 3.8492 3.2906 -0.4028 7 6 5.6035 2.4527 0.5210 8 7 6.0374 1.4920 1.2971 9 14 6.7164 3.8956 0.1094 10 1 6.5324 4.9669 1.1212 11 1 8.1318 3.4464 0.1158 12 1 6.3695 4.4202 -1.2358 13 6 4.2919 -0.0454 0.0005 14 6 3.5988 -1.2193 0.0049 15 6 2.2029 -1.2095 -0.0005 16 7 1.5036 -2.4091 -0.0005 17 6 2.2307 -3.6809 -0.0005 18 6 1.2316 -4.8396 -0.0012 19 6 0.3458 -4.7731 1.2493 20 6 -0.6498 -5.9568 1.1934 21 7 -0.4032 -6.7501 -0.0186 22 6 0.9521 -7.3167 -0.0119 23 6 1.9780 -6.1796 -0.0012 24 6 -0.6342 -5.9480 -1.2280 25 6 0.3468 -4.7726 -1.2524 26 1 -0.3634 -0.0003 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5142 29 1 1.6472 2.1171 -0.0004 30 1 6.9369 1.5291 1.6581 31 1 5.3718 -0.0544 0.0005 32 1 4.1310 -2.1590 0.0091 33 1 0.5337 -2.4051 -0.0005 34 1 2.8572 -3.7412 -0.8906 35 1 2.8572 -3.7413 0.8895 36 1 0.9686 -4.8364 2.1417 37 1 -0.2087 -3.8347 1.2546 38 1 -1.6716 -5.5776 1.1783 39 1 -0.5075 -6.5838 2.0736 40 1 1.0954 -7.9274 -0.9034 41 1 1.0842 -7.9339 0.8767 42 1 2.6073 -6.2472 -0.8886 43 1 2.5976 -6.2526 0.8925 44 1 -0.4802 -6.5686 -2.1109 45 1 -1.6562 -5.5693 -1.2235 46 1 -0.2078 -3.8342 -1.2576 47 1 0.9701 -4.8354 -2.1443 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169802849.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:26 Heat of formation + Delta-G solvation = 18.624045 kcal Electronic energy + Delta-G solvation = -24742.357980 eV Core-core repulsion = 21502.646713 eV Total energy + Delta-G solvation = -3239.711267 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.190 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.96686 -38.18218 -35.44559 -33.68031 -31.86863 -31.25369 -31.10557 -31.00038 -28.67319 -25.92560 -25.77930 -24.01118 -23.16164 -22.99722 -22.06508 -20.07378 -19.90475 -17.18350 -16.84770 -16.61327 -16.47272 -16.24244 -15.24477 -14.94887 -14.55473 -13.86383 -13.57862 -13.15797 -13.13439 -13.10574 -12.86208 -12.79077 -12.63854 -12.31867 -12.28216 -12.07718 -11.88640 -11.81479 -11.66571 -11.49843 -11.08856 -10.97796 -10.83675 -10.64827 -10.63741 -10.41352 -10.21991 -10.18151 -9.63891 -9.28066 -9.19232 -8.49591 -8.40965 -7.33756 -6.59903 -6.32545 -4.01632 2.93320 3.06808 3.15445 3.20315 3.35851 3.82037 4.06924 4.26369 4.43777 4.54720 4.69572 4.77002 4.95371 5.02693 5.07746 5.11496 5.15251 5.21106 5.55946 5.56906 5.69628 5.71964 5.76050 5.78637 5.81480 5.90351 5.92810 5.95858 5.96406 6.07217 6.11777 6.22126 6.27545 6.31395 6.35669 6.55614 6.90029 6.90746 6.91944 6.97027 7.25026 7.40736 7.58051 7.73297 7.87479 8.17573 8.32000 8.50650 8.72270 8.82270 9.08265 9.17529 10.40191 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.029948 B = 0.003142 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.738279 B = 8910.274807 C = 9428.846948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.135 4.135 3 C -0.183 4.183 4 C 0.076 3.924 5 C -0.468 4.468 6 H 0.071 0.929 7 C 0.075 3.925 8 N -0.810 5.810 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.279 1.279 12 H -0.263 1.263 13 C -0.124 4.124 14 C -0.164 4.164 15 C 0.099 3.901 16 N -0.757 5.757 17 C 0.155 3.845 18 C -0.066 4.066 19 C -0.141 4.141 20 C 0.052 3.948 21 N -0.532 5.532 22 C 0.055 3.945 23 C -0.143 4.143 24 C 0.053 3.947 25 C -0.141 4.141 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.091 0.909 30 H 0.275 0.725 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.383 0.617 34 H 0.045 0.955 35 H 0.046 0.954 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.352 -14.907 -1.914 17.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C -0.203 4.203 4 C 0.073 3.927 5 C -0.499 4.499 6 H 0.089 0.911 7 C -0.140 4.140 8 N -0.437 5.437 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.204 1.204 12 H -0.187 1.187 13 C -0.144 4.144 14 C -0.185 4.185 15 C 0.002 3.998 16 N -0.395 5.395 17 C 0.029 3.971 18 C -0.067 4.067 19 C -0.180 4.180 20 C -0.076 4.076 21 N -0.252 5.252 22 C -0.073 4.073 23 C -0.182 4.182 24 C -0.076 4.076 25 C -0.180 4.180 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.135 0.865 32 H 0.105 0.895 33 H 0.218 0.782 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.086 0.914 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.344 -15.501 -1.781 18.187 hybrid contribution 1.022 1.443 -0.022 1.768 sum -8.322 -14.058 -1.802 16.436 Atomic orbital electron populations 1.20469 0.94160 1.00268 1.00089 1.18623 0.93317 0.92361 1.09582 1.20438 0.94261 0.94807 1.10801 1.17458 0.90612 0.93190 0.91417 1.19340 0.98288 0.95926 1.36336 0.91051 1.25779 0.98390 0.96938 0.92903 1.69850 1.17848 1.32337 1.23696 0.86432 0.79218 0.81714 0.79966 1.19809 1.20372 1.18742 1.20926 0.99614 0.91110 1.02723 1.20069 0.91615 0.97425 1.09435 1.17139 0.90831 0.84350 1.07465 1.43950 1.06495 1.01896 1.87139 1.20902 0.93219 0.82897 1.00075 1.20727 0.95694 0.95000 0.95318 1.22544 0.98247 0.99558 0.97628 1.22503 0.98820 0.93611 0.92680 1.62527 1.25786 1.34438 1.02435 1.22168 0.86703 0.95988 1.02485 1.22240 0.98628 0.94602 1.02753 1.22213 0.99009 0.93529 0.92814 1.22244 0.98423 0.99600 0.97704 0.93299 0.92909 0.93918 0.89112 0.91402 0.86506 0.89524 0.78168 0.93638 0.93540 0.91303 0.91428 0.90739 0.90887 0.90792 0.90769 0.91439 0.91381 0.90846 0.90806 0.91417 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.63 9.55 36.01 0.34 -1.29 16 2 C -0.13 -3.00 5.86 -104.81 -0.61 -3.61 16 3 C -0.18 -4.55 9.37 -39.27 -0.37 -4.92 16 4 C 0.08 2.08 5.57 -106.79 -0.59 1.48 16 5 C -0.47 -12.84 9.03 -37.87 -0.34 -13.18 16 6 H 0.07 1.89 7.90 -52.48 -0.41 1.48 16 7 C 0.07 1.95 5.15 -17.34 -0.09 1.86 16 8 N -0.81 -21.75 10.96 55.54 0.61 -21.14 16 9 Si 0.90 19.44 29.59 -169.99 -5.03 14.41 16 10 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 11 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 12 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 13 C -0.12 -3.28 8.63 -39.26 -0.34 -3.62 16 14 C -0.16 -3.87 9.23 -39.77 -0.37 -4.24 16 15 C 0.10 2.16 6.65 -83.69 -0.56 1.61 16 16 N -0.76 -13.00 5.06 -58.50 -0.30 -13.30 16 17 C 0.15 2.31 3.87 -4.04 -0.02 2.29 16 18 C -0.07 -0.76 0.56 -153.91 -0.09 -0.85 16 19 C -0.14 -1.56 5.03 -25.59 -0.13 -1.68 16 20 C 0.05 0.50 6.13 -2.86 -0.02 0.49 16 21 N -0.53 -5.23 5.22 -233.21 -1.22 -6.44 16 22 C 0.06 0.50 6.10 -3.75 -0.02 0.48 16 23 C -0.14 -1.44 5.07 -26.46 -0.13 -1.57 16 24 C 0.05 0.50 6.09 -3.74 -0.02 0.48 16 25 C -0.14 -1.53 4.91 -26.47 -0.13 -1.66 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 28 H 0.04 0.66 6.53 -51.93 -0.34 0.32 16 29 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 30 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 31 H 0.12 3.22 6.19 -52.49 -0.32 2.89 16 32 H 0.09 1.89 6.68 -52.49 -0.35 1.54 16 33 H 0.38 6.00 4.24 -40.82 -0.17 5.83 16 34 H 0.05 0.72 7.94 -51.93 -0.41 0.31 16 35 H 0.05 0.75 7.92 -51.93 -0.41 0.34 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.80 6.96 -51.93 -0.36 0.44 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.07 0.79 6.97 -51.93 -0.36 0.43 16 47 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 354.27 15.07 5.34 5.34 Total: -1.00 -28.13 354.27 -11.86 -39.98 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -7.78 Total: 9.08 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: -3.48 Total: -27.93 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: -0.90 Total: -40.88 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.13 -11.86 -39.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169802849.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.607 kcal (2) G-P(sol) polarization free energy of solvation -28.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds