Wall clock time and date at job start Tue Mar 31 2020 08:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36357 * 119.92121 * 2 1 4 4 C 1.40861 * 119.83580 * 179.97438 * 3 2 1 5 5 C 1.41139 * 120.15647 * 179.97438 * 4 3 2 6 6 H 1.08004 * 119.99905 * 334.54178 * 5 4 3 7 7 C 1.39864 * 120.00160 * 154.54741 * 5 4 3 8 8 N 1.30903 * 120.00289 * 343.03849 * 7 5 4 9 9 Si 1.86810 * 119.99799 * 163.04065 * 7 5 4 10 10 H 1.48500 * 109.46998 * 89.99834 * 9 7 5 11 11 H 1.48496 * 109.46739 * 209.99823 * 9 7 5 12 12 H 1.48501 * 109.46939 * 329.99685 * 9 7 5 13 13 C 1.40905 * 119.69252 * 0.02562 * 4 3 2 14 14 C 1.36327 * 119.83239 * 359.76136 * 13 4 3 15 15 C 1.39540 * 119.91689 * 180.02562 * 2 1 3 16 16 N 1.38864 * 119.84165 * 359.97438 * 15 2 1 17 17 C 1.46503 * 119.99931 * 180.02562 * 16 15 2 18 18 C 1.52997 * 109.47030 * 180.02562 * 17 16 15 19 19 C 1.53390 * 110.11521 * 299.72267 * 18 17 16 20 20 C 1.54776 * 107.99037 * 179.57350 * 19 18 17 21 21 N 1.46946 * 109.55548 * 0.73435 * 20 19 18 22 22 C 1.46899 * 111.05852 * 61.54559 * 21 20 19 23 23 C 1.53145 * 109.37176 * 298.00623 * 22 21 20 24 24 C 1.46947 * 110.96316 * 297.50185 * 21 20 19 25 25 C 1.53121 * 109.35416 * 62.09113 * 24 21 20 26 26 H 1.09006 * 109.47289 * 269.98192 * 1 2 3 27 27 H 1.09000 * 109.46898 * 29.97803 * 1 2 3 28 28 H 1.09001 * 109.47572 * 149.97647 * 1 2 3 29 29 H 1.07998 * 120.08006 * 359.97438 * 3 2 1 30 30 H 0.96993 * 120.00264 * 179.97438 * 8 7 5 31 31 H 1.07998 * 120.08427 * 179.97438 * 13 4 3 32 32 H 1.07997 * 119.91612 * 180.25260 * 14 13 4 33 33 H 0.96991 * 120.00213 * 0.02562 * 16 15 2 34 34 H 1.09004 * 109.46724 * 300.00194 * 17 16 15 35 35 H 1.09002 * 109.47227 * 59.99990 * 17 16 15 36 36 H 1.09005 * 109.57249 * 300.16938 * 19 18 17 37 37 H 1.09004 * 109.57548 * 60.54953 * 19 18 17 38 38 H 1.08994 * 109.72594 * 240.49681 * 20 19 18 39 39 H 1.09005 * 109.07299 * 120.55994 * 20 19 18 40 40 H 1.09000 * 109.48797 * 178.03218 * 22 21 20 41 41 H 1.09003 * 109.50720 * 57.98306 * 22 21 20 42 42 H 1.09001 * 109.57418 * 240.19813 * 23 22 21 43 43 H 1.08992 * 109.68636 * 119.87058 * 23 22 21 44 44 H 1.09004 * 109.48980 * 182.05214 * 24 21 20 45 45 H 1.08997 * 109.49266 * 302.10027 * 24 21 20 46 46 H 1.09004 * 109.57256 * 240.12770 * 25 24 21 47 47 H 1.09001 * 109.58091 * 119.74803 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.1818 0.0000 4 6 3.5958 1.1797 0.0005 5 6 4.3066 2.3990 0.0000 6 1 3.8492 3.2906 -0.4028 7 6 5.6035 2.4527 0.5210 8 7 6.0374 1.4920 1.2971 9 14 6.7164 3.8956 0.1094 10 1 6.5324 4.9669 1.1212 11 1 8.1318 3.4464 0.1158 12 1 6.3695 4.4202 -1.2358 13 6 4.2919 -0.0454 0.0005 14 6 3.5988 -1.2193 0.0049 15 6 2.2029 -1.2095 -0.0005 16 7 1.5036 -2.4091 -0.0005 17 6 2.2307 -3.6809 -0.0005 18 6 1.2316 -4.8396 -0.0012 19 6 0.3458 -4.7731 1.2493 20 6 -0.6498 -5.9568 1.1934 21 7 -0.4032 -6.7501 -0.0186 22 6 0.9521 -7.3167 -0.0119 23 6 1.9780 -6.1796 -0.0012 24 6 -0.6342 -5.9480 -1.2280 25 6 0.3468 -4.7726 -1.2524 26 1 -0.3634 -0.0003 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5142 29 1 1.6472 2.1171 -0.0004 30 1 6.9369 1.5291 1.6581 31 1 5.3718 -0.0544 0.0005 32 1 4.1310 -2.1590 0.0091 33 1 0.5337 -2.4051 -0.0005 34 1 2.8572 -3.7412 -0.8906 35 1 2.8572 -3.7413 0.8895 36 1 0.9686 -4.8364 2.1417 37 1 -0.2087 -3.8347 1.2546 38 1 -1.6716 -5.5776 1.1783 39 1 -0.5075 -6.5838 2.0736 40 1 1.0954 -7.9274 -0.9034 41 1 1.0842 -7.9339 0.8767 42 1 2.6073 -6.2472 -0.8886 43 1 2.5976 -6.2526 0.8925 44 1 -0.4802 -6.5686 -2.1109 45 1 -1.6562 -5.5693 -1.2235 46 1 -0.2078 -3.8342 -1.2576 47 1 0.9701 -4.8354 -2.1443 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169802849.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:26 Heat of formation + Delta-G solvation = 3.543237 kcal Electronic energy + Delta-G solvation = -24743.011933 eV Core-core repulsion = 21502.646713 eV Total energy + Delta-G solvation = -3240.365220 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.84725 -39.94137 -36.96149 -35.33264 -33.30265 -32.93808 -31.92462 -31.81810 -30.43479 -27.53231 -27.27572 -25.65833 -23.97835 -23.87818 -23.17274 -21.80983 -21.63459 -18.78611 -18.27412 -17.82953 -17.27713 -17.23374 -16.84013 -16.52313 -15.91229 -15.34025 -15.16854 -14.51598 -14.41834 -14.25492 -13.93059 -13.90708 -13.89154 -13.64701 -13.56455 -13.22117 -13.11119 -13.09340 -12.89882 -12.80658 -12.71873 -12.56742 -12.35937 -12.14112 -12.05738 -11.50060 -11.42301 -11.23502 -11.12979 -11.02352 -10.98742 -10.29081 -9.24152 -9.19971 -8.53511 -8.11670 -6.01662 1.10396 1.15258 1.38314 1.50774 1.57775 2.26283 2.81679 2.86929 3.09379 3.57416 3.63465 3.73240 3.81194 4.11789 4.21194 4.27938 4.29806 4.32469 4.34032 4.37244 4.41573 4.65013 4.72458 4.73528 4.74990 4.78664 4.90361 4.96125 4.99113 4.99529 5.00085 5.01838 5.08224 5.12553 5.17520 5.21410 5.30658 5.33216 5.35336 5.52196 5.69178 5.87382 5.98135 6.15908 6.17048 6.19827 6.40399 6.66714 6.86523 7.08200 7.13807 7.31314 8.48341 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.029948 B = 0.003142 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.738279 B = 8910.274807 C = 9428.846948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.142 4.142 3 C -0.194 4.194 4 C 0.038 3.962 5 C -0.507 4.507 6 H 0.067 0.933 7 C 0.031 3.969 8 N -0.844 5.844 9 Si 0.976 3.024 10 H -0.264 1.264 11 H -0.269 1.269 12 H -0.261 1.261 13 C -0.146 4.146 14 C -0.175 4.175 15 C 0.114 3.886 16 N -0.743 5.743 17 C 0.154 3.846 18 C -0.060 4.060 19 C -0.138 4.138 20 C 0.057 3.943 21 N -0.535 5.535 22 C 0.057 3.943 23 C -0.140 4.140 24 C 0.056 3.944 25 C -0.138 4.138 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.281 0.719 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.395 0.605 34 H 0.038 0.962 35 H 0.034 0.966 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.060 0.940 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.064 -16.348 -2.203 19.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.147 4.147 3 C -0.214 4.214 4 C 0.035 3.965 5 C -0.538 4.538 6 H 0.085 0.915 7 C -0.180 4.180 8 N -0.472 5.472 9 Si 0.798 3.202 10 H -0.189 1.189 11 H -0.194 1.194 12 H -0.185 1.185 13 C -0.167 4.167 14 C -0.197 4.197 15 C 0.015 3.985 16 N -0.380 5.380 17 C 0.029 3.971 18 C -0.062 4.062 19 C -0.178 4.178 20 C -0.072 4.072 21 N -0.255 5.255 22 C -0.071 4.071 23 C -0.180 4.180 24 C -0.072 4.072 25 C -0.177 4.177 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.113 0.887 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.232 0.768 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.079 0.921 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.096 -16.982 -2.070 20.391 hybrid contribution 1.441 1.748 0.074 2.267 sum -9.655 -15.234 -1.996 18.146 Atomic orbital electron populations 1.20484 0.90421 1.02019 1.01503 1.19090 0.96110 0.91452 1.08014 1.20656 0.93699 0.96223 1.10819 1.17785 0.91988 0.93553 0.93166 1.19576 0.99941 0.96095 1.38191 0.91508 1.26613 0.99335 0.99922 0.92174 1.69923 1.18463 1.34315 1.24540 0.85306 0.77194 0.78070 0.79671 1.18931 1.19352 1.18543 1.20817 0.98811 0.92162 1.04869 1.20203 0.92808 0.97026 1.09696 1.17262 0.90409 0.86080 1.04796 1.43946 1.07046 1.01263 1.85752 1.20999 0.93996 0.83100 0.99039 1.20642 0.95186 0.94148 0.96179 1.22525 0.98307 1.00079 0.96871 1.22510 0.98646 0.92988 0.93040 1.62549 1.26071 1.34355 1.02507 1.22212 0.85849 0.95532 1.03504 1.22236 0.98887 0.94137 1.02748 1.22229 0.98882 0.92953 0.93138 1.22222 0.98444 1.00103 0.96913 0.91884 0.91822 0.91592 0.88719 0.90872 0.88638 0.88322 0.76813 0.94418 0.94767 0.92070 0.92179 0.89941 0.90055 0.89770 0.89879 0.91402 0.91549 0.89888 0.90023 0.92096 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.84 9.55 71.24 0.68 -2.16 16 2 C -0.14 -6.23 5.86 -19.99 -0.12 -6.34 16 3 C -0.19 -9.84 9.37 22.47 0.21 -9.63 16 4 C 0.04 2.16 5.57 -21.27 -0.12 2.04 16 5 C -0.51 -29.07 9.03 23.38 0.21 -28.86 16 6 H 0.07 3.72 7.90 -2.91 -0.02 3.69 16 7 C 0.03 1.67 5.15 85.23 0.44 2.11 16 8 N -0.84 -47.14 10.96 21.82 0.24 -46.90 16 9 Si 0.98 40.90 29.59 68.60 2.03 42.93 16 10 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 11 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 12 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 13 C -0.15 -8.13 8.63 22.48 0.19 -7.94 16 14 C -0.18 -8.48 9.23 22.15 0.20 -8.27 16 15 C 0.11 4.91 6.65 38.67 0.26 5.17 16 16 N -0.74 -24.44 5.06 -338.98 -1.71 -26.15 16 17 C 0.15 4.44 3.87 86.38 0.33 4.77 16 18 C -0.06 -1.28 0.56 -51.79 -0.03 -1.31 16 19 C -0.14 -2.77 5.03 31.33 0.16 -2.62 16 20 C 0.06 0.93 6.13 86.90 0.53 1.46 16 21 N -0.53 -8.86 5.22 -891.75 -4.65 -13.51 16 22 C 0.06 0.88 6.10 86.35 0.53 1.41 16 23 C -0.14 -2.56 5.07 30.77 0.16 -2.40 16 24 C 0.06 0.90 6.09 86.33 0.53 1.43 16 25 C -0.14 -2.68 4.91 30.77 0.15 -2.53 16 26 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 28 H 0.07 1.82 6.53 -2.39 -0.02 1.81 16 29 H 0.09 4.58 8.06 -2.91 -0.02 4.56 16 30 H 0.28 14.30 8.30 -92.71 -0.77 13.53 16 31 H 0.10 5.60 6.19 -2.91 -0.02 5.58 16 32 H 0.10 4.41 6.68 -2.91 -0.02 4.39 16 33 H 0.39 11.39 4.24 -92.71 -0.39 10.99 16 34 H 0.04 1.17 7.94 -2.39 -0.02 1.15 16 35 H 0.03 1.09 7.92 -2.39 -0.02 1.07 16 36 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.06 1.29 6.96 -2.38 -0.02 1.27 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 45 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.06 1.26 6.97 -2.38 -0.02 1.25 16 47 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -62.93 354.27 0.77 -62.16 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: 0.55 Total: 35.15 kcal Atomic # 6 Polarization: -57.99 SS G_CDS: 4.32 Total: -53.67 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -6.13 Total: -86.57 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -62.93 0.77 -62.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169802849.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.699 kcal (2) G-P(sol) polarization free energy of solvation -62.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds