Wall clock time and date at job start Tue Mar 31 2020 08:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36357 * 119.92012 * 2 1 4 4 C 1.40862 * 119.83628 * 180.29761 * 3 2 1 5 5 C 1.41135 * 120.15890 * 179.74053 * 4 3 2 6 6 H 1.08002 * 119.99633 * 33.79372 * 5 4 3 7 7 C 1.39863 * 119.99927 * 213.80033 * 5 4 3 8 8 N 1.30900 * 120.00394 * 357.49171 * 7 5 4 9 9 Si 1.86802 * 119.99669 * 177.49297 * 7 5 4 10 10 H 1.48505 * 109.47099 * 269.99823 * 9 7 5 11 11 H 1.48499 * 109.47312 * 29.99912 * 9 7 5 12 12 H 1.48506 * 109.47093 * 149.99867 * 9 7 5 13 13 C 1.40904 * 119.68763 * 359.45607 * 4 3 2 14 14 C 1.36323 * 119.83945 * 0.26016 * 13 4 3 15 15 C 1.39547 * 119.91650 * 179.75478 * 2 1 3 16 16 N 1.38858 * 119.84562 * 359.95764 * 15 2 1 17 17 C 1.46499 * 120.00124 * 186.97270 * 16 15 2 18 18 H 1.08999 * 109.36616 * 357.76239 * 17 16 15 19 19 C 1.53152 * 109.36859 * 117.51360 * 17 16 15 20 20 C 1.54019 * 108.49999 * 66.19383 * 19 17 16 21 21 H 1.08997 * 113.03113 * 187.87180 * 20 19 17 22 22 C 1.54990 * 107.05196 * 313.18726 * 20 19 17 23 23 C 1.56387 * 103.66055 * 87.75203 * 22 20 19 24 24 N 1.48240 * 106.91096 * 358.91992 * 23 22 20 25 25 C 1.47672 * 108.91064 * 271.87891 * 24 23 22 26 26 C 1.48810 * 105.17682 * 27.53210 * 24 23 22 27 27 H 1.08995 * 110.93022 * 75.43151 * 26 24 23 28 28 C 1.52999 * 110.96013 * 199.09078 * 26 24 23 29 29 H 1.09004 * 109.47103 * 270.24678 * 1 2 3 30 30 H 1.08999 * 109.46761 * 30.24652 * 1 2 3 31 31 H 1.09003 * 109.47070 * 150.24639 * 1 2 3 32 32 H 1.07999 * 120.08056 * 0.02562 * 3 2 1 33 33 H 0.97002 * 120.00354 * 180.02562 * 8 7 5 34 34 H 1.08000 * 120.08469 * 180.27320 * 13 4 3 35 35 H 1.08001 * 119.92252 * 179.97438 * 14 13 4 36 36 H 0.97000 * 119.99708 * 6.96754 * 16 15 2 37 37 H 1.09004 * 109.62817 * 185.89370 * 19 17 16 38 38 H 1.08994 * 109.63108 * 306.29038 * 19 17 16 39 39 H 1.09002 * 110.38320 * 206.25235 * 22 20 19 40 40 H 1.09001 * 110.38644 * 328.61322 * 22 20 19 41 41 H 1.09004 * 109.87006 * 239.56141 * 23 22 20 42 42 H 1.09002 * 109.97870 * 118.34051 * 23 22 20 43 43 H 1.09006 * 109.50413 * 287.14155 * 25 24 23 44 44 H 1.09004 * 109.50098 * 167.03639 * 25 24 23 45 45 H 1.08999 * 109.46495 * 178.91381 * 28 26 24 46 46 H 1.09005 * 109.46568 * 298.90621 * 28 26 24 47 47 H 1.08991 * 109.47619 * 58.90906 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1872 1.1818 0.0000 4 6 3.5958 1.1798 -0.0063 5 6 4.3066 2.3991 -0.0119 6 1 3.9094 3.2580 0.5085 7 6 5.5253 2.4949 -0.6914 8 7 6.0308 1.4411 -1.2808 9 14 6.4317 4.1270 -0.7579 10 1 5.9896 4.8904 -1.9525 11 1 6.1327 4.9096 0.4683 12 1 7.8934 3.8784 -0.8423 13 6 4.2919 -0.0453 -0.0010 14 6 3.5989 -1.2192 0.0048 15 6 2.2030 -1.2095 0.0052 16 7 1.5038 -2.4092 0.0112 17 6 2.2229 -3.6755 0.1706 18 1 3.2933 -3.4783 0.2296 19 6 1.7614 -4.3630 1.4590 20 6 0.2841 -4.7667 1.2953 21 1 -0.1607 -5.1401 2.2176 22 6 -0.4606 -3.5389 0.7119 23 6 -0.2966 -3.7078 -0.8342 24 7 0.5086 -4.9335 -1.0510 25 6 1.9408 -4.5743 -1.0348 26 6 0.2347 -5.7939 0.1318 27 1 -0.7511 -6.2531 0.0594 28 6 1.3204 -6.8592 0.2968 29 1 -0.3633 0.0044 1.0277 30 1 -0.3633 0.8878 -0.5177 31 1 -0.3633 -0.8922 -0.5100 32 1 1.6472 2.1171 0.0004 33 1 6.8762 1.5075 -1.7518 34 1 5.3719 -0.0543 -0.0014 35 1 4.1311 -2.1590 0.0085 36 1 0.5391 -2.4087 -0.0901 37 1 2.3665 -5.2521 1.6366 38 1 1.8654 -3.6756 2.2984 39 1 -1.5138 -3.5655 0.9916 40 1 0.0017 -2.6146 1.0582 41 1 0.2215 -2.8429 -1.2485 42 1 -1.2748 -3.8162 -1.3028 43 1 2.1931 -4.0424 -1.9523 44 1 2.5424 -5.4803 -0.9619 45 1 1.1066 -7.4621 1.1794 46 1 1.3379 -7.4996 -0.5851 47 1 2.2898 -6.3750 0.4136 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170969665.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:26 Heat of formation + Delta-G solvation = 106.311595 kcal Electronic energy + Delta-G solvation = -25737.710423 eV Core-core repulsion = 22501.801573 eV Total energy + Delta-G solvation = -3235.908849 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.07484 -39.71804 -36.53411 -34.85478 -33.85562 -33.04366 -32.66084 -31.63920 -29.82611 -27.56125 -27.01204 -25.55165 -25.17728 -23.85091 -21.87138 -21.80235 -21.59661 -19.75932 -18.76604 -18.52607 -17.24581 -16.91266 -16.30757 -15.57474 -15.53461 -15.34894 -15.13030 -14.83543 -14.67444 -14.38373 -14.08027 -13.85961 -13.69961 -13.53167 -13.27666 -13.17131 -12.94681 -12.85233 -12.66954 -12.62311 -12.54607 -12.36869 -12.28503 -12.05210 -11.72072 -11.58824 -11.48728 -11.37066 -11.31544 -11.02218 -10.87659 -10.17910 -9.37056 -9.20990 -8.37715 -7.94023 -6.05816 1.11598 1.19272 1.38771 1.51892 1.56485 2.29172 2.89839 2.93904 3.03495 3.55757 3.68689 3.77574 3.87525 3.98716 4.07791 4.20464 4.23268 4.37530 4.40906 4.41786 4.47322 4.50125 4.59585 4.70861 4.78962 4.83507 4.88241 4.90333 4.97729 5.02458 5.04864 5.05871 5.09726 5.10943 5.16700 5.26022 5.28088 5.35586 5.40453 5.55540 5.73482 5.88514 5.89246 5.97982 6.05079 6.23292 6.43936 6.70850 6.90880 7.12458 7.16366 7.31848 8.57741 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.029049 B = 0.003776 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.658613 B = 7412.543242 C = 7934.609765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.155 4.155 3 C -0.180 4.180 4 C 0.026 3.974 5 C -0.505 4.505 6 H 0.063 0.937 7 C 0.024 3.976 8 N -0.859 5.859 9 Si 0.981 3.019 10 H -0.268 1.268 11 H -0.262 1.262 12 H -0.271 1.271 13 C -0.131 4.131 14 C -0.188 4.188 15 C 0.118 3.882 16 N -0.761 5.761 17 C 0.114 3.886 18 H 0.074 0.926 19 C -0.128 4.128 20 C -0.111 4.111 21 H 0.106 0.894 22 C -0.184 4.184 23 C -0.008 4.008 24 N -0.492 5.492 25 C 0.020 3.980 26 C 0.058 3.942 27 H 0.099 0.901 28 C -0.154 4.154 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.277 0.723 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.425 0.575 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.058 0.942 44 H 0.105 0.895 45 H 0.078 0.922 46 H 0.064 0.936 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.019 -15.141 3.577 19.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.159 4.159 3 C -0.200 4.200 4 C 0.023 3.977 5 C -0.538 4.538 6 H 0.082 0.918 7 C -0.185 4.185 8 N -0.490 5.490 9 Si 0.803 3.197 10 H -0.193 1.193 11 H -0.186 1.186 12 H -0.196 1.196 13 C -0.151 4.151 14 C -0.210 4.210 15 C 0.018 3.982 16 N -0.419 5.419 17 C 0.007 3.993 18 H 0.092 0.908 19 C -0.167 4.167 20 C -0.130 4.130 21 H 0.124 0.876 22 C -0.223 4.223 23 C -0.138 4.138 24 N -0.213 5.213 25 C -0.110 4.110 26 C -0.050 4.050 27 H 0.117 0.883 28 C -0.211 4.211 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.287 0.713 37 H 0.111 0.889 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.077 0.923 44 H 0.123 0.877 45 H 0.097 0.903 46 H 0.083 0.917 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.906 -15.613 2.879 19.261 hybrid contribution 0.896 1.596 0.454 1.885 sum -10.010 -14.017 3.332 17.544 Atomic orbital electron populations 1.20551 0.90698 1.01807 1.01640 1.19055 0.95917 0.91591 1.09350 1.20742 0.93850 0.96200 1.09233 1.17806 0.91861 0.93659 0.94388 1.19547 1.05134 0.97502 1.31594 0.91828 1.26578 0.97282 1.01357 0.93255 1.69879 1.18537 1.31359 1.29189 0.85224 0.77322 0.77793 0.79355 1.19280 1.18553 1.19556 1.21073 0.99421 0.92106 1.02533 1.20404 0.93039 0.97169 1.10344 1.17592 0.90752 0.87072 1.02792 1.47390 1.10203 1.01296 1.82979 1.21486 0.97657 0.84847 0.95359 0.90838 1.22308 0.97077 1.00610 0.96698 1.23009 0.94921 0.95101 0.99989 0.87570 1.24064 1.02152 1.00630 0.95502 1.24197 0.99687 0.94536 0.95343 1.66427 1.04322 1.11767 1.38808 1.23032 0.91256 0.99563 0.97144 1.23175 1.00681 0.93723 0.87440 0.88330 1.22066 0.98219 0.97916 1.02880 0.91452 0.91813 0.92206 0.88721 0.91298 0.87905 0.87671 0.71320 0.88897 0.92928 0.89607 0.88774 0.89572 0.89216 0.92342 0.87733 0.90311 0.91746 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.94 9.40 71.24 0.67 -2.27 16 2 C -0.15 -6.73 5.86 -19.99 -0.12 -6.85 16 3 C -0.18 -9.12 9.37 22.47 0.21 -8.91 16 4 C 0.03 1.45 5.55 -21.27 -0.12 1.33 16 5 C -0.51 -29.18 9.03 23.38 0.21 -28.97 16 6 H 0.06 3.57 7.85 -2.91 -0.02 3.54 16 7 C 0.02 1.31 5.41 85.23 0.46 1.77 16 8 N -0.86 -48.53 10.61 21.81 0.23 -48.30 16 9 Si 0.98 41.76 29.56 68.60 2.03 43.79 16 10 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 11 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 12 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 13 C -0.13 -7.26 8.60 22.48 0.19 -7.07 16 14 C -0.19 -8.94 9.22 22.15 0.20 -8.74 16 15 C 0.12 5.00 6.64 38.67 0.26 5.26 16 16 N -0.76 -24.69 2.68 -318.31 -0.85 -25.55 16 17 C 0.11 3.18 3.04 45.04 0.14 3.32 16 18 H 0.07 2.33 5.27 -2.39 -0.01 2.32 16 19 C -0.13 -2.88 5.09 30.99 0.16 -2.73 16 20 C -0.11 -2.06 4.03 -8.98 -0.04 -2.09 16 21 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 22 C -0.18 -3.85 5.76 32.45 0.19 -3.67 16 23 C -0.01 -0.19 5.98 87.22 0.52 0.33 16 24 N -0.49 -11.17 6.00 -894.03 -5.36 -16.53 16 25 C 0.02 0.50 5.45 86.15 0.47 0.97 16 26 C 0.06 1.02 3.65 45.33 0.17 1.18 16 27 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 28 C -0.15 -2.23 8.02 71.98 0.58 -1.65 16 29 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 31 H 0.06 1.70 6.01 -2.39 -0.01 1.68 16 32 H 0.09 4.57 8.06 -2.91 -0.02 4.55 16 33 H 0.28 14.36 8.30 -92.71 -0.77 13.59 16 34 H 0.10 6.07 6.14 -2.91 -0.02 6.06 16 35 H 0.11 4.56 5.74 -2.91 -0.02 4.55 16 36 H 0.43 12.09 0.08 -127.26 -0.01 12.08 16 37 H 0.09 1.72 5.85 -2.39 -0.01 1.71 16 38 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.09 2.43 5.00 -2.39 -0.01 2.42 16 41 H 0.09 2.44 4.76 -2.38 -0.01 2.43 16 42 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 44 H 0.10 2.21 5.61 -2.38 -0.01 2.20 16 45 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 47 H 0.07 1.03 4.04 -2.39 -0.01 1.02 16 Total: -1.00 -64.01 334.32 1.17 -62.84 By element: Atomic # 1 Polarization: 41.54 SS G_CDS: 0.98 Total: 42.52 kcal Atomic # 6 Polarization: -62.92 SS G_CDS: 4.15 Total: -58.77 kcal Atomic # 7 Polarization: -84.39 SS G_CDS: -5.98 Total: -90.37 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -64.01 1.17 -62.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170969665.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.150 kcal (2) G-P(sol) polarization free energy of solvation -64.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds