Wall clock time and date at job start Tue Mar 31 2020 08:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36360 * 120.08117 * 2 1 4 4 C 1.39552 * 120.15739 * 180.02562 * 3 2 1 5 5 N 1.38857 * 119.83305 * 179.97438 * 4 3 2 6 6 C 1.46509 * 119.99424 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.36511 * 324.74433 * 6 5 4 8 8 C 1.53158 * 109.36354 * 204.99646 * 6 5 4 9 9 C 1.54009 * 108.49684 * 185.80995 * 8 6 5 10 10 H 1.08997 * 113.03420 * 187.87335 * 9 8 6 11 11 C 1.55000 * 107.05780 * 314.12141 * 9 8 6 12 12 C 1.54062 * 104.76078 * 87.42753 * 11 9 8 13 13 N 1.48236 * 106.70049 * 358.98596 * 12 11 9 14 14 C 1.47678 * 108.90899 * 271.83337 * 13 12 11 15 15 C 1.48800 * 105.17645 * 27.48460 * 13 12 11 16 16 H 1.08997 * 110.93684 * 199.10144 * 15 13 12 17 17 C 1.53002 * 110.96382 * 75.45071 * 15 13 12 18 18 C 1.39576 * 120.32014 * 359.97438 * 4 3 2 19 19 C 1.36322 * 120.16367 * 0.24792 * 18 4 3 20 20 C 1.40874 * 120.08622 * 180.02562 * 2 1 3 21 21 C 1.41141 * 120.15303 * 359.97438 * 20 2 1 22 22 H 1.08000 * 119.99730 * 25.89104 * 21 20 2 23 23 C 1.39864 * 120.00456 * 205.88710 * 21 20 2 24 24 N 1.30909 * 119.99511 * 17.25938 * 23 21 20 25 25 Si 1.86800 * 120.00261 * 197.25807 * 23 21 20 26 26 H 1.48500 * 109.47111 * 94.50001 * 25 23 21 27 27 H 1.48499 * 109.46921 * 214.50053 * 25 23 21 28 28 H 1.48496 * 109.46804 * 334.49953 * 25 23 21 29 29 H 1.08997 * 109.46561 * 90.00492 * 1 2 3 30 30 H 1.09003 * 109.47126 * 210.00058 * 1 2 3 31 31 H 1.08997 * 109.47269 * 330.00272 * 1 2 3 32 32 H 1.07995 * 119.91509 * 0.02562 * 3 2 1 33 33 H 0.96997 * 120.00300 * 0.02562 * 5 4 3 34 34 H 1.08996 * 109.63043 * 305.51547 * 8 6 5 35 35 H 1.08999 * 109.62776 * 66.10693 * 8 6 5 36 36 H 1.09000 * 110.38027 * 206.25175 * 11 9 8 37 37 H 1.08999 * 110.37522 * 328.61017 * 11 9 8 38 38 H 1.08997 * 110.01200 * 239.67097 * 12 11 9 39 39 H 1.08997 * 110.04688 * 118.31845 * 12 11 9 40 40 H 1.08999 * 109.50479 * 287.14149 * 14 13 12 41 41 H 1.09003 * 109.49721 * 167.03195 * 14 13 12 42 42 H 1.09005 * 109.46947 * 307.40739 * 17 15 13 43 43 H 1.09005 * 109.47156 * 67.40644 * 17 15 13 44 44 H 1.08993 * 109.47352 * 187.40726 * 17 15 13 45 45 H 1.08003 * 119.91855 * 179.97438 * 18 4 3 46 46 H 1.07999 * 120.08269 * 179.70214 * 19 18 4 47 47 H 0.97003 * 119.99485 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5860 1.1818 -0.0005 5 7 4.2752 2.3873 -0.0011 6 6 5.7402 2.3933 -0.0022 7 1 6.1056 1.5551 0.5911 8 6 6.2431 3.7050 0.6080 9 6 7.7756 3.7550 0.4640 10 1 8.2267 4.5935 0.9946 11 6 8.3186 2.3702 0.8998 12 6 8.2779 1.5123 -0.3792 13 7 7.7191 2.3711 -1.4505 14 6 6.2470 2.2537 -1.4390 15 6 8.0746 3.7622 -1.0598 16 1 7.4439 4.4852 -1.5770 17 6 9.5549 4.0440 -1.3251 18 6 4.2922 -0.0221 -0.0005 19 6 3.6222 -1.2093 -0.0051 20 6 2.2132 -1.2189 -0.0005 21 6 1.5126 -2.4442 -0.0005 22 1 0.5140 -2.4952 -0.4086 23 6 2.1116 -3.5924 0.5278 24 7 3.1528 -3.4847 1.3139 25 14 1.4258 -5.2794 0.1118 26 1 2.1661 -5.8431 -1.0455 27 1 1.5794 -6.1788 1.2834 28 1 -0.0134 -5.1573 -0.2332 29 1 -0.3632 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6504 2.1152 0.0004 33 1 3.7867 3.2253 -0.0007 34 1 5.7979 4.5486 0.0805 35 1 5.9728 3.7453 1.6632 36 1 9.3421 2.4611 1.2635 37 1 7.6789 1.9364 1.6683 38 1 7.6378 0.6436 -0.2254 39 1 9.2847 1.1910 -0.6458 40 1 5.9565 1.2804 -1.8344 41 1 5.8144 3.0415 -2.0557 42 1 10.1620 3.2716 -0.8528 43 1 9.7380 4.0436 -2.3996 44 1 9.8192 5.0172 -0.9118 45 1 5.3722 -0.0131 -0.0014 46 1 4.1699 -2.1400 -0.0100 47 1 3.5685 -4.2810 1.6800 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170970542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:30 Heat of formation + Delta-G solvation = 26.273185 kcal Electronic energy + Delta-G solvation = -24982.571601 eV Core-core repulsion = 21743.192025 eV Total energy + Delta-G solvation = -3239.379575 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.190 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.09487 -38.03764 -35.39548 -33.24301 -32.08186 -31.52221 -30.84003 -30.24979 -28.29528 -26.50203 -25.38149 -24.57229 -23.84850 -21.38191 -20.96928 -20.48598 -19.48822 -18.91896 -17.08970 -16.64407 -16.11687 -15.43885 -14.94955 -14.47461 -14.23626 -13.97636 -13.72161 -13.61397 -12.94548 -12.92501 -12.61781 -12.56508 -12.38528 -12.30059 -12.14902 -11.82905 -11.55926 -11.51949 -11.25217 -11.09758 -11.07566 -10.99106 -10.86598 -10.79338 -10.65490 -10.45971 -10.43998 -10.19677 -9.54091 -9.27064 -9.21384 -8.79893 -8.18421 -7.32551 -6.62740 -6.34769 -4.01895 2.91010 3.07237 3.15991 3.19375 3.36253 3.89477 4.06234 4.23495 4.50557 4.67612 4.76136 4.83811 5.12971 5.13280 5.16486 5.25548 5.28697 5.40619 5.49402 5.60501 5.67655 5.74196 5.79405 5.84244 5.90602 5.93840 6.00231 6.10993 6.16230 6.20378 6.26181 6.28101 6.42299 6.46576 6.72288 6.73492 6.87723 6.90452 6.98191 7.08040 7.23963 7.37285 7.62815 7.75989 7.82911 8.16131 8.32493 8.50130 8.70585 8.80471 9.07650 9.16911 10.38754 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.022224 B = 0.003667 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.608517 B = 7633.871938 C = 8428.012193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.158 4.158 3 C -0.157 4.157 4 C 0.097 3.903 5 N -0.755 5.755 6 C 0.133 3.867 7 H 0.079 0.921 8 C -0.123 4.123 9 C -0.117 4.117 10 H 0.091 0.909 11 C -0.147 4.147 12 C 0.025 3.975 13 N -0.490 5.490 14 C 0.021 3.979 15 C 0.055 3.945 16 H 0.083 0.917 17 C -0.135 4.135 18 C -0.167 4.167 19 C -0.120 4.120 20 C 0.079 3.921 21 C -0.463 4.463 22 H 0.075 0.925 23 C 0.075 3.925 24 N -0.808 5.808 25 Si 0.901 3.099 26 H -0.271 1.271 27 H -0.281 1.281 28 H -0.264 1.264 29 H 0.041 0.959 30 H 0.062 0.938 31 H 0.035 0.965 32 H 0.085 0.915 33 H 0.382 0.618 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.085 0.915 46 H 0.116 0.884 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.680 11.930 -1.538 15.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.160 4.160 3 C -0.179 4.179 4 C 0.000 4.000 5 N -0.389 5.389 6 C 0.025 3.975 7 H 0.097 0.903 8 C -0.161 4.161 9 C -0.137 4.137 10 H 0.109 0.891 11 C -0.186 4.186 12 C -0.103 4.103 13 N -0.212 5.212 14 C -0.110 4.110 15 C -0.054 4.054 16 H 0.102 0.898 17 C -0.192 4.192 18 C -0.189 4.189 19 C -0.140 4.140 20 C 0.076 3.924 21 C -0.494 4.494 22 H 0.093 0.907 23 C -0.140 4.140 24 N -0.435 5.435 25 Si 0.726 3.274 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.188 1.188 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.215 0.785 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.103 0.897 46 H 0.134 0.866 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.192 11.496 -1.982 15.491 hybrid contribution -0.776 -0.314 0.816 1.169 sum 9.416 11.182 -1.166 14.665 Atomic orbital electron populations 1.20413 0.93718 1.00471 0.99593 1.19300 0.94136 0.92743 1.09834 1.19647 0.91503 0.96401 1.10378 1.17311 0.90568 0.85073 1.07048 1.43880 1.02799 1.05249 1.86976 1.21362 0.82684 0.97446 0.96014 0.90347 1.22100 0.94780 0.97818 1.01415 1.23096 0.95486 0.97820 0.97347 0.89113 1.22968 1.01332 0.95300 0.98965 1.23099 1.00998 0.96955 0.89270 1.66420 1.09114 1.04439 1.41201 1.23147 0.87089 1.03420 0.97305 1.23130 0.97185 0.91851 0.93254 0.89842 1.21640 0.94692 1.00931 1.01963 1.20061 0.96876 0.92031 1.09935 1.20887 0.94631 0.95991 1.02524 1.17345 0.91586 0.91614 0.91893 1.19376 1.01797 0.92550 1.35726 0.90709 1.25794 0.94422 1.00889 0.92907 1.69863 1.19473 1.31003 1.23194 0.86423 0.80310 0.81924 0.78720 1.19639 1.20607 1.18817 0.94038 0.91939 0.94559 0.89683 0.78517 0.91787 0.91403 0.91500 0.90912 0.90632 0.90457 0.89798 0.91103 0.92409 0.92167 0.92532 0.89655 0.86608 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.79 9.39 36.01 0.34 -1.46 16 2 C -0.16 -3.83 5.90 -104.30 -0.62 -4.45 16 3 C -0.16 -3.51 9.46 -39.77 -0.38 -3.88 16 4 C 0.10 2.08 6.64 -83.69 -0.56 1.52 16 5 N -0.75 -12.89 5.21 -51.95 -0.27 -13.17 16 6 C 0.13 1.95 1.77 -67.85 -0.12 1.83 16 7 H 0.08 1.30 3.67 -51.93 -0.19 1.11 16 8 C -0.12 -1.46 4.98 -26.12 -0.13 -1.59 16 9 C -0.12 -1.21 3.82 -87.82 -0.34 -1.54 16 10 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 11 C -0.15 -1.60 5.40 -25.12 -0.14 -1.74 16 12 C 0.03 0.31 5.55 -2.53 -0.01 0.30 16 13 N -0.49 -6.34 5.82 -221.20 -1.29 -7.63 16 14 C 0.02 0.30 5.31 -3.40 -0.02 0.28 16 15 C 0.05 0.58 3.02 -65.44 -0.20 0.39 16 16 H 0.08 0.90 7.70 -51.93 -0.40 0.50 16 17 C -0.13 -1.21 9.45 37.16 0.35 -0.86 16 18 C -0.17 -3.87 8.72 -39.77 -0.35 -4.22 16 19 C -0.12 -3.13 8.62 -39.26 -0.34 -3.47 16 20 C 0.08 2.09 5.56 -106.79 -0.59 1.50 16 21 C -0.46 -12.38 8.10 -37.87 -0.31 -12.68 16 22 H 0.07 1.94 6.87 -52.49 -0.36 1.57 16 23 C 0.07 1.92 5.13 -17.34 -0.09 1.83 16 24 N -0.81 -21.37 11.02 55.54 0.61 -20.76 16 25 Si 0.90 19.24 29.59 -169.99 -5.03 14.21 16 26 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 27 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 28 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.35 6.77 -51.93 -0.35 1.00 16 31 H 0.04 0.67 8.08 -51.93 -0.42 0.26 16 32 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.38 5.90 8.60 -40.82 -0.35 5.55 16 34 H 0.06 0.71 8.07 -51.93 -0.42 0.29 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.88 6.94 -51.93 -0.36 0.52 16 38 H 0.08 1.05 6.82 -51.93 -0.35 0.70 16 39 H 0.08 0.87 7.89 -51.93 -0.41 0.46 16 40 H 0.08 1.43 7.53 -51.93 -0.39 1.04 16 41 H 0.07 1.02 7.87 -51.93 -0.41 0.61 16 42 H 0.06 0.53 6.96 -51.93 -0.36 0.17 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 1.82 5.82 -52.48 -0.31 1.52 16 46 H 0.12 3.14 6.25 -52.49 -0.33 2.82 16 47 H 0.28 6.69 8.30 -40.82 -0.34 6.36 16 LS Contribution 350.81 15.07 5.29 5.29 Total: -1.00 -27.35 350.81 -11.68 -39.03 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -7.50 Total: 11.27 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: -3.48 Total: -28.24 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: -0.95 Total: -41.55 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.35 -11.68 -39.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170970542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.300 kcal (2) G-P(sol) polarization free energy of solvation -27.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds