Wall clock time and date at job start Tue Mar 31 2020 08:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00508 * 2 1 4 4 H 1.48503 * 109.47016 * 270.00306 * 3 2 1 5 5 H 1.48497 * 109.47015 * 29.99703 * 3 2 1 6 6 H 1.48492 * 109.47159 * 150.00173 * 3 2 1 7 7 C 1.37883 * 119.99250 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99295 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00615 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47682 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47651 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47100 * 59.99905 * 11 10 9 13 13 N 1.46902 * 109.47010 * 59.99892 * 12 11 10 14 14 C 1.46900 * 110.99786 * 154.99988 * 13 12 11 15 15 H 1.08998 * 109.46953 * 35.00622 * 14 13 12 16 16 C 1.50703 * 109.46790 * 155.00026 * 14 13 12 17 17 C 1.38230 * 119.61667 * 242.07919 * 16 14 13 18 18 C 1.38627 * 119.15830 * 180.02562 * 17 16 14 19 19 C 1.38671 * 118.42183 * 0.02562 * 18 17 16 20 20 C 1.38186 * 119.16545 * 0.27666 * 19 18 17 21 21 N 1.31854 * 119.61968 * 62.10458 * 16 14 13 22 22 C 1.53001 * 109.47225 * 275.00128 * 14 13 12 23 23 C 1.53001 * 117.49900 * 12.87801 * 22 14 13 24 24 C 1.52994 * 117.49998 * 304.21707 * 22 14 13 25 25 C 1.53007 * 109.46911 * 300.00060 * 12 11 10 26 26 C 1.52999 * 109.46891 * 60.00322 * 25 12 11 27 27 H 0.96999 * 119.99761 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46825 * 299.99932 * 9 7 2 29 29 H 1.09005 * 109.47083 * 59.99335 * 10 9 7 30 30 H 1.09003 * 109.46788 * 300.00406 * 10 9 7 31 31 H 1.09005 * 109.47037 * 300.00178 * 11 10 9 32 32 H 1.09002 * 109.47360 * 179.97438 * 11 10 9 33 33 H 1.08998 * 109.47120 * 180.02562 * 12 11 10 34 34 H 1.00900 * 110.99605 * 31.04631 * 13 12 11 35 35 H 1.07998 * 120.42201 * 0.04553 * 17 16 14 36 36 H 1.07995 * 120.79130 * 180.02562 * 18 17 16 37 37 H 1.08002 * 120.42080 * 180.02562 * 19 18 17 38 38 H 1.07997 * 119.61828 * 179.70708 * 20 19 18 39 39 H 1.09002 * 115.54952 * 158.54778 * 22 14 13 40 40 H 1.08997 * 117.49367 * 359.97438 * 23 22 14 41 41 H 1.08998 * 117.49874 * 145.02217 * 23 22 14 42 42 H 1.09000 * 117.49954 * 214.98171 * 24 22 14 43 43 H 1.09001 * 117.49749 * 359.97438 * 24 22 14 44 44 H 1.09003 * 109.46643 * 179.97438 * 25 12 11 45 45 H 1.08993 * 109.47243 * 300.00142 * 25 12 11 46 46 H 1.09002 * 109.46963 * 180.02562 * 26 25 12 47 47 H 1.08994 * 109.47874 * 59.99347 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9872 0.0012 12 6 0.5999 -5.0685 -1.2478 13 7 1.4441 -4.9911 -2.4475 14 6 0.7889 -5.6337 -3.5945 15 1 -0.2869 -5.4682 -3.5380 16 6 1.3217 -5.0416 -4.8739 17 6 0.4629 -4.3752 -5.7278 18 6 0.9630 -3.8347 -6.9023 19 6 2.3141 -3.9857 -7.1755 20 6 3.1104 -4.6702 -6.2772 21 7 2.6015 -5.1656 -5.1660 22 6 1.0759 -7.1364 -3.5697 23 6 1.6737 -7.7204 -2.2881 24 6 2.5412 -7.5754 -3.5409 25 6 -0.3943 -3.9055 -1.2477 26 6 0.3709 -2.5806 -1.2484 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 0.8904 29 1 2.8718 -3.6045 0.8905 30 1 2.8717 -3.6045 -0.8895 31 1 0.8536 -5.0446 0.8914 32 1 2.1883 -5.8157 0.0007 33 1 0.0546 -6.0123 -1.2471 34 1 2.3528 -5.3952 -2.2769 35 1 -0.5843 -4.2766 -5.4829 36 1 0.3158 -3.3084 -7.5882 37 1 2.7380 -3.5771 -8.0810 38 1 4.1627 -4.7963 -6.4851 39 1 0.3751 -7.7581 -4.1270 40 1 1.8629 -7.0339 -1.4628 41 1 1.3665 -8.7264 -2.0024 42 1 2.8045 -8.4861 -4.0789 43 1 3.3009 -6.7937 -3.5400 44 1 -1.0209 -3.9633 -2.1377 45 1 -1.0206 -3.9629 -0.3575 46 1 -0.3374 -1.7520 -1.2479 47 1 0.9973 -2.5231 -2.1385 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329642.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:27 Heat of formation + Delta-G solvation = 38.828708 kcal Electronic energy + Delta-G solvation = -25430.062057 eV Core-core repulsion = 22191.226930 eV Total energy + Delta-G solvation = -3238.835127 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.190 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.41040 -40.07391 -38.24114 -35.24694 -33.87607 -33.17933 -32.33669 -31.30527 -30.07322 -27.31015 -26.16597 -24.33265 -23.55411 -23.28808 -22.89521 -22.20515 -20.81282 -19.57636 -18.35084 -17.80981 -17.40199 -16.86173 -16.70424 -16.45641 -15.94553 -15.71498 -15.34179 -14.76167 -14.53773 -14.41869 -14.20816 -13.98430 -13.76650 -13.40743 -13.17469 -12.97451 -12.83787 -12.73877 -12.54701 -12.47303 -12.30003 -12.21519 -11.88399 -11.76831 -11.55777 -11.21114 -11.11340 -10.88938 -10.66086 -10.63951 -10.36817 -10.24449 -10.14469 -9.80093 -9.08123 -8.01664 -6.14401 0.30918 0.51159 1.39195 1.39834 1.49886 2.45614 2.87165 2.94629 3.23643 3.44885 3.56636 3.81726 3.94641 4.03539 4.10439 4.14095 4.20687 4.25503 4.34535 4.35775 4.37535 4.51247 4.66847 4.72341 4.80475 4.83556 4.88816 4.92991 4.96662 4.99784 5.06599 5.08281 5.16516 5.19717 5.30363 5.33427 5.38094 5.40395 5.43845 5.54343 5.65434 5.72435 5.87630 5.92587 6.20670 6.29027 6.35460 6.53644 6.63605 6.99128 7.23489 7.51978 9.01403 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.013454 B = 0.005028 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.620775 B = 5567.597197 C = 6763.005689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 0.946 3.054 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.529 4.529 8 H 0.043 0.957 9 C 0.050 3.950 10 C -0.092 4.092 11 C -0.112 4.112 12 C 0.105 3.895 13 N -0.670 5.670 14 C 0.167 3.833 15 H 0.091 0.909 16 C 0.140 3.860 17 C -0.181 4.181 18 C -0.082 4.082 19 C -0.181 4.181 20 C 0.081 3.919 21 N -0.486 5.486 22 C -0.180 4.180 23 C -0.187 4.187 24 C -0.158 4.158 25 C -0.100 4.100 26 C -0.080 4.080 27 H 0.257 0.743 28 H -0.014 1.014 29 H 0.033 0.967 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.344 0.656 35 H 0.138 0.862 36 H 0.155 0.845 37 H 0.158 0.842 38 H 0.171 0.829 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.049 0.951 45 H 0.045 0.955 46 H 0.041 0.959 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.368 -15.252 -12.925 20.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.772 3.228 4 H -0.205 1.205 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.567 4.567 8 H 0.061 0.939 9 C 0.031 3.969 10 C -0.130 4.130 11 C -0.150 4.150 12 C -0.004 4.004 13 N -0.303 5.303 14 C 0.056 3.944 15 H 0.109 0.891 16 C 0.002 3.998 17 C -0.201 4.201 18 C -0.108 4.108 19 C -0.200 4.200 20 C -0.076 4.076 21 N -0.195 5.195 22 C -0.200 4.200 23 C -0.224 4.224 24 C -0.195 4.195 25 C -0.138 4.138 26 C -0.118 4.118 27 H 0.066 0.934 28 H 0.004 0.996 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.166 0.834 35 H 0.156 0.844 36 H 0.172 0.828 37 H 0.176 0.824 38 H 0.188 0.812 39 H 0.127 0.873 40 H 0.112 0.888 41 H 0.124 0.876 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.566 -14.932 -12.473 19.519 hybrid contribution -0.196 0.946 -0.239 0.995 sum 1.370 -13.987 -12.712 18.950 Atomic orbital electron populations 1.70041 1.06967 1.26621 1.51979 1.25678 0.95633 1.02009 0.95251 0.85745 0.78887 0.80130 0.78021 1.20511 1.20761 1.19486 1.21630 0.92664 0.92796 1.49594 0.93891 1.18574 0.93038 0.91972 0.93285 1.21345 0.97792 0.94616 0.99225 1.21713 0.98612 0.97341 0.97336 1.21389 0.93682 0.96485 0.88889 1.60363 1.05689 1.60277 1.03967 1.19951 0.97850 0.89331 0.87230 0.89051 1.21141 0.89486 0.94218 0.94992 1.22168 1.01898 0.99922 0.96137 1.21881 0.96276 0.96323 0.96284 1.22413 0.94639 1.00824 1.02159 1.23182 1.01274 0.93743 0.89376 1.67394 1.13899 1.19379 1.18862 1.22876 0.98281 0.95927 1.02914 1.23302 1.04547 1.02641 0.91889 1.22875 0.93459 1.02715 1.00436 1.21528 0.96880 0.95895 0.99478 1.21094 0.98032 0.95105 0.97553 0.93368 0.99610 0.94774 0.93356 0.91887 0.90874 0.92337 0.83394 0.84419 0.82760 0.82417 0.81188 0.87300 0.88755 0.87644 0.88671 0.88553 0.93231 0.93595 0.94003 0.95267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.01 11.32 21.45 0.24 -54.76 16 2 C 0.01 0.71 5.30 84.66 0.45 1.16 16 3 Si 0.95 45.69 29.54 68.60 2.03 47.72 16 4 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 6 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.53 -30.72 8.56 25.60 0.22 -30.50 16 8 H 0.04 2.49 7.74 -2.91 -0.02 2.47 16 9 C 0.05 2.58 2.10 -11.54 -0.02 2.56 16 10 C -0.09 -3.92 4.98 30.59 0.15 -3.76 16 11 C -0.11 -3.71 5.14 30.59 0.16 -3.56 16 12 C 0.10 3.30 1.54 44.92 0.07 3.37 16 13 N -0.67 -20.78 4.37 -473.29 -2.07 -22.85 16 14 C 0.17 4.46 2.58 44.17 0.11 4.58 16 15 H 0.09 2.41 6.83 -2.39 -0.02 2.39 16 16 C 0.14 3.90 5.73 42.55 0.24 4.14 16 17 C -0.18 -4.57 9.71 22.36 0.22 -4.35 16 18 C -0.08 -1.73 10.18 22.47 0.23 -1.51 16 19 C -0.18 -3.60 10.11 22.36 0.23 -3.37 16 20 C 0.08 1.88 11.18 84.67 0.95 2.82 16 21 N -0.49 -13.50 8.27 -183.88 -1.52 -15.02 16 22 C -0.18 -4.01 5.68 -10.80 -0.06 -4.07 16 23 C -0.19 -3.88 8.83 30.62 0.27 -3.61 16 24 C -0.16 -3.45 8.92 30.62 0.27 -3.18 16 25 C -0.10 -3.84 5.52 30.60 0.17 -3.67 16 26 C -0.08 -3.93 4.82 30.60 0.15 -3.78 16 27 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 28 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 29 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.05 2.11 7.48 -2.39 -0.02 2.10 16 31 H 0.06 2.07 8.14 -2.38 -0.02 2.06 16 32 H 0.07 2.01 6.78 -2.39 -0.02 2.00 16 33 H 0.06 1.60 6.77 -2.39 -0.02 1.59 16 34 H 0.34 10.62 5.51 -89.69 -0.49 10.13 16 35 H 0.14 3.10 7.94 -2.91 -0.02 3.08 16 36 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 37 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 38 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16 39 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.09 2.15 3.73 -2.39 -0.01 2.15 16 41 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.10 2.46 6.49 -2.39 -0.02 2.44 16 44 H 0.05 1.77 7.43 -2.39 -0.02 1.75 16 45 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.04 2.37 6.07 -2.39 -0.01 2.35 16 47 H 0.03 1.50 7.60 -2.39 -0.02 1.48 16 Total: -1.00 -66.15 355.57 2.94 -63.21 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.46 Total: 28.43 kcal Atomic # 6 Polarization: -50.53 SS G_CDS: 3.80 Total: -46.73 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -3.35 Total: -92.63 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -66.15 2.94 -63.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329642.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.040 kcal (2) G-P(sol) polarization free energy of solvation -66.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds