Wall clock time and date at job start Tue Mar 31 2020 08:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00296 * 2 1 4 4 H 1.48493 * 109.47242 * 274.99445 * 3 2 1 5 5 H 1.48501 * 109.46782 * 34.99793 * 3 2 1 6 6 H 1.48504 * 109.46754 * 154.99380 * 3 2 1 7 7 C 1.37880 * 119.99701 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99847 * 189.56994 * 7 2 1 9 9 C 1.50701 * 119.99997 * 9.57476 * 7 2 1 10 10 C 1.53002 * 109.47146 * 185.44336 * 9 7 2 11 11 C 1.53002 * 109.47109 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47115 * 59.99955 * 11 10 9 13 13 N 1.46899 * 109.47115 * 59.99982 * 12 11 10 14 14 C 1.46893 * 111.00027 * 154.99701 * 13 12 11 15 15 H 1.09001 * 109.47148 * 35.00268 * 14 13 12 16 16 C 1.50700 * 109.47092 * 155.00036 * 14 13 12 17 17 C 1.38644 * 120.79150 * 39.71946 * 16 14 13 18 18 C 1.38206 * 119.16299 * 179.79904 * 17 16 14 19 19 N 1.31867 * 120.76414 * 0.48686 * 18 17 16 20 20 C 1.31866 * 121.72621 * 359.74598 * 19 18 17 21 21 C 1.38200 * 120.76453 * 0.02562 * 20 19 18 22 22 C 1.53001 * 109.47495 * 275.00374 * 14 13 12 23 23 C 1.52995 * 117.50030 * 180.02562 * 22 14 13 24 24 C 1.53002 * 60.00279 * 107.48319 * 23 22 14 25 25 C 1.53002 * 109.47169 * 300.00008 * 12 11 10 26 26 C 1.53001 * 109.47322 * 65.44141 * 9 7 2 27 27 H 0.96997 * 119.99865 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47078 * 305.44494 * 9 7 2 29 29 H 1.09002 * 109.46894 * 59.99728 * 10 9 7 30 30 H 1.08994 * 109.47125 * 299.99694 * 10 9 7 31 31 H 1.09008 * 109.46945 * 300.00120 * 11 10 9 32 32 H 1.08997 * 109.46794 * 180.02562 * 11 10 9 33 33 H 1.09000 * 109.47189 * 180.02562 * 12 11 10 34 34 H 1.00901 * 110.99618 * 31.04426 * 13 12 11 35 35 H 1.08002 * 120.41889 * 0.02562 * 17 16 14 36 36 H 1.08002 * 119.61615 * 180.20753 * 18 17 16 37 37 H 1.07997 * 119.61750 * 180.02562 * 20 19 18 38 38 H 1.08005 * 120.42074 * 179.97438 * 21 20 19 39 39 H 1.08996 * 115.56371 * 34.30391 * 22 14 13 40 40 H 1.09006 * 117.49959 * 359.97438 * 23 22 14 41 41 H 1.09005 * 117.50091 * 214.97782 * 23 22 14 42 42 H 1.09001 * 117.49678 * 107.48695 * 24 23 22 43 43 H 1.08997 * 117.49909 * 252.48506 * 24 23 22 44 44 H 1.08994 * 109.47212 * 180.02562 * 25 12 11 45 45 H 1.09004 * 109.46756 * 299.99617 * 25 12 11 46 46 H 1.09000 * 109.47051 * 299.99972 * 26 9 7 47 47 H 1.08994 * 109.47111 * 60.00207 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1073 -1.3947 5 1 1.5035 2.6198 0.8030 6 1 3.5956 1.4118 0.5919 7 6 2.0045 -1.1941 -0.0005 8 1 3.0732 -1.2007 0.1550 9 6 1.2667 -2.4900 -0.2182 10 6 2.2322 -3.6631 -0.0378 11 6 1.4829 -4.9788 -0.2582 12 6 0.9062 -5.0061 -1.6751 13 7 1.9988 -4.8955 -2.6507 14 6 1.6168 -5.4899 -3.9385 15 1 0.5562 -5.3148 -4.1192 16 6 2.4253 -4.8588 -5.0426 17 6 3.7683 -4.5662 -4.8607 18 6 4.4788 -3.9913 -5.8974 19 7 3.8914 -3.7128 -7.0447 20 6 2.6152 -3.9727 -7.2515 21 6 1.8424 -4.5513 -6.2626 22 6 1.8866 -6.9956 -3.9055 23 6 1.5528 -7.8009 -5.1628 24 6 3.0126 -7.5310 -4.7924 25 6 -0.0593 -3.8330 -1.8554 26 6 0.6904 -2.5170 -1.6353 27 1 -0.4850 0.8400 0.0004 28 1 0.4556 -2.5723 0.5054 29 1 2.6427 -3.6438 0.9717 30 1 3.0431 -3.5808 -0.7614 31 1 0.6721 -5.0609 0.4658 32 1 2.1707 -5.8145 -0.1292 33 1 0.3720 -5.9433 -1.8319 34 1 2.8447 -5.3154 -2.2954 35 1 4.2540 -4.7882 -3.9219 36 1 5.5261 -3.7635 -5.7648 37 1 2.1689 -3.7307 -8.2047 38 1 0.7976 -4.7614 -6.4378 39 1 1.7320 -7.4800 -2.9415 40 1 1.1405 -7.2581 -6.0135 41 1 1.1780 -8.8153 -5.0260 42 1 3.5982 -8.3679 -4.4119 43 1 3.5610 -6.8110 -5.3997 44 1 -0.4705 -3.8527 -2.8646 45 1 -0.8701 -3.9152 -1.1315 46 1 0.0025 -1.6813 -1.7637 47 1 1.5013 -2.4347 -2.3589 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330527.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:14 Heat of formation + Delta-G solvation = 46.455926 kcal Electronic energy + Delta-G solvation = -25216.630174 eV Core-core repulsion = 21978.125788 eV Total energy + Delta-G solvation = -3238.504386 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.190 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.56133 -38.65239 -37.32684 -34.19723 -32.76064 -31.50026 -31.10940 -29.74576 -28.77357 -25.84051 -24.34014 -23.48056 -22.82328 -22.32472 -21.60236 -20.63868 -19.96165 -18.19111 -16.90743 -16.22797 -16.17185 -16.12376 -15.58995 -14.96869 -14.70630 -14.28474 -14.23675 -13.85095 -13.51376 -13.48487 -12.79569 -12.65631 -12.49688 -12.04281 -11.90293 -11.71009 -11.52461 -11.43664 -11.28833 -11.13112 -10.78876 -10.62696 -10.56123 -10.25617 -10.17676 -10.09110 -9.77326 -9.45261 -9.39891 -9.24429 -9.03133 -8.73858 -8.56917 -8.17687 -8.02710 -5.90751 -3.90358 1.22474 1.34837 3.37162 3.44299 3.47137 3.55596 3.87293 4.31609 4.49884 4.53753 4.54249 4.64763 4.81031 4.87773 4.92406 5.16879 5.26119 5.36318 5.38268 5.43427 5.46263 5.50220 5.60709 5.66220 5.69248 5.72487 5.85023 5.89609 5.95933 6.13362 6.15053 6.30750 6.33680 6.44257 6.48606 6.53995 6.77517 6.79302 6.84557 7.01956 7.26144 7.34746 7.52268 7.61990 7.66824 7.88884 8.04480 8.18380 8.19947 8.60895 9.13965 9.71986 11.18355 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.014792 B = 0.004650 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.517669 B = 6020.660581 C = 7125.762078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.881 3.119 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.509 4.509 8 H 0.051 0.949 9 C 0.051 3.949 10 C -0.101 4.101 11 C -0.118 4.118 12 C 0.096 3.904 13 N -0.658 5.658 14 C 0.153 3.847 15 H 0.092 0.908 16 C -0.010 4.010 17 C -0.144 4.144 18 C 0.092 3.908 19 N -0.492 5.492 20 C 0.094 3.906 21 C -0.172 4.172 22 C -0.179 4.179 23 C -0.175 4.175 24 C -0.179 4.179 25 C -0.106 4.106 26 C -0.090 4.090 27 H 0.257 0.743 28 H 0.024 0.976 29 H 0.040 0.960 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.029 0.971 34 H 0.339 0.661 35 H 0.134 0.866 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.129 0.871 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.037 0.963 45 H 0.052 0.948 46 H 0.061 0.939 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.150 -15.706 -10.598 19.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.710 3.290 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.547 4.547 8 H 0.070 0.930 9 C 0.032 3.968 10 C -0.139 4.139 11 C -0.156 4.156 12 C -0.013 4.013 13 N -0.288 5.288 14 C 0.043 3.957 15 H 0.110 0.890 16 C -0.019 4.019 17 C -0.164 4.164 18 C -0.064 4.064 19 N -0.201 5.201 20 C -0.063 4.063 21 C -0.192 4.192 22 C -0.199 4.199 23 C -0.213 4.213 24 C -0.216 4.216 25 C -0.144 4.144 26 C -0.128 4.128 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.159 0.841 35 H 0.152 0.848 36 H 0.169 0.831 37 H 0.168 0.832 38 H 0.147 0.853 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.118 0.882 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.318 -14.539 -11.409 18.776 hybrid contribution -0.118 -0.354 0.918 0.991 sum 3.200 -14.893 -10.491 18.496 Atomic orbital electron populations 1.69973 1.05864 1.26128 1.50940 1.24927 0.94684 0.98788 0.95350 0.86755 0.80113 0.84277 0.77904 1.20836 1.21497 1.20005 1.21202 0.93915 0.91270 1.48293 0.93030 1.18609 0.93706 0.91342 0.93106 1.21529 0.99083 0.93912 0.99360 1.21755 0.99742 0.98926 0.95215 1.21514 0.91812 0.96762 0.91219 1.60562 1.06290 1.59715 1.02226 1.20085 0.98539 0.87821 0.89275 0.88987 1.20108 0.93961 0.94009 0.93804 1.21912 0.94610 0.99682 1.00186 1.22719 1.00198 0.94837 0.88651 1.67627 1.11754 1.17161 1.23588 1.22622 0.89770 0.95029 0.98838 1.21972 1.01227 1.01695 0.94334 1.23178 1.04922 0.95907 0.95920 1.22886 0.98743 1.00823 0.98802 1.23134 0.91548 1.03320 1.03609 1.21619 0.96829 0.96958 0.98983 1.21360 0.98762 0.93359 0.99340 0.93313 0.95745 0.94150 0.92641 0.92023 0.93950 0.95261 0.84135 0.84808 0.83087 0.83220 0.85298 0.87487 0.88757 0.89023 0.89137 0.88221 0.94406 0.92977 0.92074 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.02 12.16 55.43 0.67 -25.35 16 2 C 0.06 1.79 5.20 -17.82 -0.09 1.70 16 3 Si 0.88 21.80 29.55 -169.99 -5.02 16.77 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.51 -14.09 8.48 -34.44 -0.29 -14.39 16 8 H 0.05 1.43 7.77 -52.49 -0.41 1.02 16 9 C 0.05 1.24 1.96 -91.77 -0.18 1.06 16 10 C -0.10 -2.03 4.98 -26.73 -0.13 -2.16 16 11 C -0.12 -1.91 5.30 -26.73 -0.14 -2.05 16 12 C 0.10 1.46 2.63 -67.71 -0.18 1.28 16 13 N -0.66 -9.17 4.05 -100.96 -0.41 -9.58 16 14 C 0.15 1.84 2.43 -68.87 -0.17 1.67 16 15 H 0.09 1.18 7.01 -51.93 -0.36 0.82 16 16 C -0.01 -0.12 3.41 -104.32 -0.36 -0.48 16 17 C -0.14 -1.77 7.71 -39.44 -0.30 -2.07 16 18 C 0.09 1.16 11.18 -17.55 -0.20 0.96 16 19 N -0.49 -6.73 10.36 -13.26 -0.14 -6.86 16 20 C 0.09 1.14 11.18 -17.55 -0.20 0.94 16 21 C -0.17 -2.01 9.38 -39.44 -0.37 -2.38 16 22 C -0.18 -1.80 5.47 -90.62 -0.50 -2.29 16 23 C -0.17 -1.58 10.02 -26.73 -0.27 -1.85 16 24 C -0.18 -1.69 9.51 -26.73 -0.25 -1.94 16 25 C -0.11 -1.96 5.52 -26.70 -0.15 -2.11 16 26 C -0.09 -2.08 4.88 -26.71 -0.13 -2.21 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.02 0.67 8.09 -51.93 -0.42 0.25 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 1.11 7.48 -51.93 -0.39 0.72 16 31 H 0.06 1.02 8.14 -51.92 -0.42 0.59 16 32 H 0.04 0.58 8.12 -51.93 -0.42 0.16 16 33 H 0.03 0.41 7.48 -51.93 -0.39 0.02 16 34 H 0.34 4.40 7.38 -39.29 -0.29 4.11 16 35 H 0.13 1.53 7.37 -52.49 -0.39 1.15 16 36 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 39 H 0.11 1.09 7.94 -51.93 -0.41 0.67 16 40 H 0.09 0.85 7.73 -51.93 -0.40 0.45 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.10 1.04 5.42 -51.93 -0.28 0.76 16 44 H 0.04 0.66 7.43 -51.93 -0.39 0.27 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.06 1.62 6.91 -51.93 -0.36 1.26 16 47 H 0.05 1.20 7.60 -51.93 -0.39 0.80 16 LS Contribution 363.62 15.07 5.48 5.48 Total: -1.00 -29.80 363.62 -11.14 -40.93 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -7.82 Total: 4.91 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: -3.90 Total: -26.31 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.13 Total: -41.79 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.80 -11.14 -40.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330527.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.390 kcal (2) G-P(sol) polarization free energy of solvation -29.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds