Wall clock time and date at job start Tue Mar 31 2020 07:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99983 * 2 1 4 4 C 1.53001 * 109.46859 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.47294 * 65.00096 * 4 3 2 6 6 C 1.42899 * 113.99875 * 180.02562 * 5 4 3 7 7 H 1.08997 * 109.47298 * 329.99839 * 6 5 4 8 8 C 1.53007 * 109.47044 * 89.99897 * 6 5 4 9 9 C 1.50705 * 109.46942 * 209.99779 * 6 5 4 10 10 O 1.21280 * 119.99658 * 348.31051 * 9 6 5 11 11 N 1.34777 * 119.99910 * 168.31842 * 9 6 5 12 12 C 1.46931 * 120.63107 * 4.25179 * 11 9 6 13 13 C 1.52761 * 109.00882 * 233.58878 * 12 11 9 14 14 C 1.53034 * 109.38501 * 305.59018 * 13 12 11 15 15 N 1.46496 * 109.45285 * 181.25656 * 14 13 12 16 16 C 1.36929 * 120.00331 * 84.93200 * 15 14 13 17 17 H 1.08001 * 120.00137 * 0.02562 * 16 15 14 18 18 C 1.38815 * 120.00438 * 180.02562 * 16 15 14 19 19 N 1.31621 * 119.99693 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00162 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47453 * 90.00064 * 20 18 16 22 22 H 1.48507 * 109.47115 * 210.00004 * 20 18 16 23 23 H 1.48497 * 109.47265 * 329.99831 * 20 18 16 24 24 C 1.53038 * 109.53866 * 61.24011 * 14 13 12 25 25 C 1.46926 * 120.62912 * 184.54132 * 11 9 6 26 26 H 1.08990 * 109.47192 * 300.00113 * 1 2 3 27 27 H 1.08999 * 109.47027 * 60.00475 * 1 2 3 28 28 H 1.09003 * 109.47080 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46902 * 59.99813 * 3 2 1 30 30 H 1.08996 * 109.46630 * 299.99941 * 3 2 1 31 31 H 1.08998 * 109.46556 * 185.00232 * 4 3 2 32 32 H 1.09003 * 109.47026 * 304.99346 * 4 3 2 33 33 H 1.08997 * 109.47105 * 56.91965 * 8 6 5 34 34 H 1.09006 * 109.46781 * 176.91899 * 8 6 5 35 35 H 1.08998 * 109.47037 * 296.91373 * 8 6 5 36 36 H 1.09001 * 109.58233 * 353.42561 * 12 11 9 37 37 H 1.08999 * 109.58335 * 113.84938 * 12 11 9 38 38 H 1.08992 * 109.56228 * 185.55179 * 13 12 11 39 39 H 1.09003 * 109.35721 * 65.50137 * 13 12 11 40 40 H 1.09006 * 109.46028 * 301.22073 * 14 13 12 41 41 H 0.97004 * 119.99532 * 264.94345 * 15 14 13 42 42 H 0.96996 * 120.00152 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.49875 * 178.68623 * 24 14 13 44 44 H 1.09001 * 109.49979 * 58.58626 * 24 14 13 45 45 H 1.08993 * 109.58099 * 246.15101 * 25 11 9 46 46 H 1.08998 * 109.58567 * 6.43303 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9659 0.5792 -1.2201 6 6 5.3822 0.4186 -1.3214 7 1 5.8787 1.2102 -0.7603 8 6 5.7836 -0.9420 -0.7479 9 6 5.7941 0.4948 -2.7691 10 8 4.9527 0.4560 -3.6417 11 7 7.0974 0.6060 -3.0940 12 6 8.1346 0.5608 -2.0542 13 6 9.0221 1.7975 -2.1826 14 6 9.5661 1.8862 -3.6103 15 7 10.4415 3.0551 -3.7270 16 6 11.7598 2.9618 -3.3689 17 1 12.1545 2.0263 -3.0008 18 6 12.5892 4.0695 -3.4790 19 7 12.1081 5.2097 -3.9271 20 14 14.3878 3.9419 -2.9912 21 1 15.1926 3.5323 -4.1701 22 1 14.8627 5.2610 -2.5017 23 1 14.5380 2.9308 -1.9140 24 6 8.4018 2.0209 -4.5943 25 6 7.5076 0.7811 -4.4939 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6886 1.8463 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 3.9784 2.1765 0.0903 32 1 3.8508 0.5685 0.8428 33 1 5.2452 -1.7308 -1.2732 34 1 6.8564 -1.0876 -0.8749 35 1 5.5352 -0.9767 0.3128 36 1 7.6654 0.5499 -1.0704 37 1 8.7412 -0.3358 -2.1821 38 1 9.8526 1.7251 -1.4806 39 1 8.4345 2.6885 -1.9612 40 1 10.1329 0.9838 -3.8396 41 1 10.0870 3.8953 -4.0578 42 1 12.6875 5.9839 -4.0037 43 1 8.7910 2.1075 -5.6087 44 1 7.8201 2.9098 -4.3501 45 1 8.0620 -0.0971 -4.8246 46 1 6.6248 0.9130 -5.1195 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202750429.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:32 Heat of formation + Delta-G solvation = -112.066834 kcal Electronic energy + Delta-G solvation = -25137.504588 eV Core-core repulsion = 21448.984125 eV Total energy + Delta-G solvation = -3688.520463 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.33608 -38.62322 -37.66853 -36.91193 -34.55746 -32.71889 -31.72075 -30.70146 -29.78343 -29.13618 -26.55839 -25.49273 -24.04098 -23.03057 -22.81581 -22.18895 -20.31174 -19.02071 -17.57643 -17.09858 -16.99638 -16.88361 -16.03454 -15.64637 -15.33550 -15.07789 -14.82342 -14.62733 -14.12119 -13.84084 -13.59265 -13.48497 -13.33376 -13.17917 -12.81649 -12.47251 -12.37078 -12.23204 -11.92599 -11.81856 -11.66156 -11.51934 -11.19354 -10.98654 -10.89774 -10.83835 -10.50099 -10.25881 -10.02469 -9.97087 -9.85040 -9.70517 -9.39603 -8.94075 -8.49670 -7.01488 -5.80929 -3.10311 2.65225 2.78378 3.39954 3.45045 3.46886 3.47604 3.65918 4.42660 4.54406 4.65946 4.76191 4.84838 4.88977 5.01690 5.02991 5.06208 5.13313 5.19496 5.28000 5.31477 5.34187 5.38013 5.40660 5.47901 5.50612 5.55571 5.59996 5.70856 5.92242 5.94287 6.00035 6.20366 6.33892 6.36193 6.48116 6.57689 6.81208 6.86221 6.95514 7.00857 7.50344 7.64960 8.26785 8.37257 9.48472 10.05977 10.40604 11.41578 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.028094 B = 0.002671 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.403559 B =10481.852018 C =10719.479852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.064 3.936 4 C 0.060 3.940 5 O -0.349 6.349 6 C 0.071 3.929 7 H 0.085 0.915 8 C -0.174 4.174 9 C 0.517 3.483 10 O -0.528 6.528 11 N -0.605 5.605 12 C 0.102 3.898 13 C -0.153 4.153 14 C 0.179 3.821 15 N -0.724 5.724 16 C -0.240 4.240 17 H 0.071 0.929 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.139 4.139 25 C 0.118 3.882 26 H 0.039 0.961 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.049 0.951 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.043 -10.360 9.472 22.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.013 4.013 4 C -0.017 4.017 5 O -0.267 6.267 6 C 0.010 3.990 7 H 0.103 0.897 8 C -0.231 4.231 9 C 0.304 3.696 10 O -0.404 6.404 11 N -0.340 5.340 12 C -0.021 4.021 13 C -0.194 4.194 14 C 0.069 3.931 15 N -0.364 5.364 16 C -0.371 4.371 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.178 4.178 25 C -0.005 4.005 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.332 -10.638 8.899 22.987 hybrid contribution 0.990 0.740 0.529 1.344 sum -17.342 -9.899 9.428 22.082 Atomic orbital electron populations 1.22739 0.81133 1.02813 0.99851 1.87964 1.19544 1.27299 1.95373 1.22544 0.92181 0.85541 1.01002 1.22648 0.93638 0.97585 0.87853 1.88108 1.19427 1.81586 1.37596 1.21893 0.83717 0.99047 0.94358 0.89710 1.22329 1.02581 0.96422 1.01793 1.20277 0.82227 0.76644 0.90486 1.90686 1.50299 1.49091 1.50288 1.48105 1.05222 1.71964 1.08695 1.21933 0.89804 1.00074 0.90280 1.22621 0.98725 0.95911 1.02126 1.20160 0.89859 0.92171 0.90947 1.42439 1.06944 1.09026 1.78036 1.19226 0.85765 0.96144 1.35989 0.91153 1.24760 0.98251 0.95849 1.02115 1.69662 1.35081 1.01025 1.52247 0.86202 0.85274 0.76704 0.78054 1.21714 1.21810 1.20771 1.22214 0.97152 0.97205 1.01224 1.21615 0.99216 0.98218 0.81405 0.94263 0.93955 0.89622 0.91734 0.92143 0.91492 0.92196 0.90960 0.90459 0.91268 0.90382 0.91168 0.90507 0.92229 0.93339 0.78257 0.93480 0.90459 0.91857 0.91491 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.28 10.67 -40.08 -0.43 -4.71 16 3 C 0.06 0.59 6.32 37.16 0.23 0.83 16 4 C 0.06 0.58 6.13 37.16 0.23 0.81 16 5 O -0.35 -4.81 9.51 -59.55 -0.57 -5.37 16 6 C 0.07 0.87 2.28 -27.88 -0.06 0.80 16 7 H 0.09 0.87 6.90 -51.93 -0.36 0.51 16 8 C -0.17 -1.71 9.12 37.16 0.34 -1.37 16 9 C 0.52 7.95 7.05 -10.98 -0.08 7.87 16 10 O -0.53 -10.16 15.97 -14.08 -0.22 -10.38 16 11 N -0.60 -8.53 2.98 -173.03 -0.52 -9.05 16 12 C 0.10 1.26 5.17 -3.93 -0.02 1.24 16 13 C -0.15 -2.44 5.64 -26.84 -0.15 -2.59 16 14 C 0.18 3.33 2.73 -67.90 -0.19 3.14 16 15 N -0.72 -17.45 5.12 -53.39 -0.27 -17.72 16 16 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 17 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 20 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 C -0.14 -2.27 5.55 -26.61 -0.15 -2.42 16 25 C 0.12 1.71 6.42 -3.71 -0.02 1.69 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 32 H 0.06 0.51 7.94 -51.93 -0.41 0.10 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.67 5.89 -51.93 -0.31 0.36 16 35 H 0.07 0.56 7.94 -51.93 -0.41 0.15 16 36 H 0.08 0.78 4.70 -51.93 -0.24 0.54 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 41 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.09 1.34 7.03 -51.93 -0.37 0.98 16 LS Contribution 369.24 15.07 5.56 5.56 Total: -1.00 -33.85 369.24 -7.62 -41.46 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -7.87 Total: 6.00 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 1.00 Total: 4.31 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -0.06 Total: -53.72 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -1.22 Total: -20.47 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.85 -7.62 -41.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202750429.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.603 kcal (2) G-P(sol) polarization free energy of solvation -33.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds