Wall clock time and date at job start Tue Mar 31 2020 07:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30862 * 1 3 3 Si 1.86809 * 119.99993 * 2 1 4 4 H 1.48500 * 109.46996 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47214 * 119.99936 * 3 2 1 6 6 H 1.48502 * 109.46817 * 240.00114 * 3 2 1 7 7 C 1.39934 * 120.00344 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00516 * 154.61365 * 7 2 1 9 9 C 1.41155 * 119.99698 * 334.61840 * 7 2 1 10 10 C 1.40732 * 120.29027 * 332.24008 * 9 7 2 11 11 C 1.36486 * 119.92865 * 180.02562 * 10 9 7 12 12 C 1.38828 * 120.53610 * 0.02562 * 11 10 9 13 13 C 1.38298 * 120.59499 * 359.97344 * 12 11 10 14 14 C 1.38451 * 120.04940 * 359.72301 * 13 12 11 15 15 O 1.35645 * 120.26460 * 180.27472 * 14 13 12 16 16 C 1.42900 * 116.99947 * 5.35482 * 15 14 13 17 17 H 1.08995 * 109.46998 * 29.64715 * 16 15 14 18 18 C 1.53002 * 109.47015 * 269.64299 * 16 15 14 19 19 C 1.53001 * 109.47010 * 180.02562 * 18 16 15 20 20 C 1.53005 * 109.47003 * 60.00195 * 19 18 16 21 21 H 1.08998 * 109.47010 * 180.02562 * 20 19 18 22 22 C 1.53000 * 109.46945 * 59.99820 * 20 19 18 23 23 C 1.53001 * 109.46666 * 179.97438 * 22 20 19 24 24 C 1.53004 * 109.47239 * 60.00466 * 23 22 20 25 25 C 1.53001 * 109.46945 * 299.99777 * 24 23 22 26 26 C 1.52997 * 109.47313 * 59.99650 * 25 24 23 27 27 H 1.08995 * 109.47202 * 179.97438 * 26 25 24 28 28 C 1.53001 * 109.46785 * 60.00142 * 26 25 24 29 29 H 0.97002 * 119.99917 * 174.12926 * 1 2 3 30 30 H 1.07999 * 120.03483 * 359.97438 * 10 9 7 31 31 H 1.08001 * 119.72990 * 179.97438 * 11 10 9 32 32 H 1.07997 * 119.70107 * 180.02562 * 12 11 10 33 33 H 1.08001 * 119.97629 * 179.97438 * 13 12 11 34 34 H 1.09004 * 109.47314 * 300.00088 * 18 16 15 35 35 H 1.08997 * 109.46875 * 60.00293 * 18 16 15 36 36 H 1.08995 * 109.46926 * 300.00368 * 19 18 16 37 37 H 1.08994 * 109.47131 * 179.97438 * 19 18 16 38 38 H 1.08998 * 109.47526 * 300.00002 * 22 20 19 39 39 H 1.08996 * 109.46735 * 60.00224 * 22 20 19 40 40 H 1.09004 * 109.46968 * 180.02562 * 23 22 20 41 41 H 1.08992 * 109.47673 * 300.00090 * 23 22 20 42 42 H 1.08998 * 109.47093 * 59.99731 * 24 23 22 43 43 H 1.08997 * 109.47044 * 179.97438 * 24 23 22 44 44 H 1.08999 * 109.46889 * 300.00348 * 25 24 23 45 45 H 1.08994 * 109.47285 * 179.97438 * 25 24 23 46 46 H 1.08996 * 109.47411 * 59.99719 * 28 26 25 47 47 H 1.09003 * 109.47553 * 299.99767 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 1.2776 2.7465 -0.0006 5 1 3.0964 1.6965 1.2125 6 1 3.0964 1.6964 -1.2125 7 6 2.0084 -1.2118 0.0005 8 1 3.0101 -1.2572 -0.4004 9 6 1.4048 -2.3750 0.5251 10 6 0.4250 -2.2747 1.5303 11 6 -0.1534 -3.4043 2.0326 12 6 0.2169 -4.6562 1.5603 13 6 1.1772 -4.7802 0.5730 14 6 1.7753 -3.6502 0.0416 15 8 2.7137 -3.7665 -0.9309 16 6 2.9553 -5.0774 -1.4459 17 1 2.0426 -5.6691 -1.3760 18 6 4.0624 -5.7494 -0.6312 19 6 4.3215 -7.1527 -1.1830 20 6 4.7544 -7.0531 -2.6472 21 1 4.9385 -8.0529 -3.0404 22 6 6.0354 -6.2222 -2.7448 23 6 6.4686 -6.1231 -4.2088 24 6 5.3617 -5.4514 -5.0240 25 6 4.0807 -6.2823 -4.9263 26 6 3.6474 -6.3815 -3.4623 27 1 2.7346 -6.9730 -3.3928 28 6 3.3882 -4.9780 -2.9110 29 1 -0.4850 -0.8357 -0.0859 30 1 0.1318 -1.3050 1.9045 31 1 -0.9046 -3.3236 2.8043 32 1 -0.2499 -5.5411 1.9671 33 1 1.4580 -5.7591 0.2132 34 1 4.9752 -5.1577 -0.7012 35 1 3.7542 -5.8199 0.4118 36 1 3.4089 -7.7446 -1.1135 37 1 5.1105 -7.6313 -0.6030 38 1 5.8509 -5.2224 -2.3517 39 1 6.8241 -6.7010 -2.1644 40 1 7.3815 -5.5315 -4.2783 41 1 6.6533 -7.1229 -4.6016 42 1 5.1771 -4.4515 -4.6312 43 1 5.6705 -5.3805 -6.0668 44 1 4.2654 -7.2822 -5.3190 45 1 3.2920 -5.8036 -5.5066 46 1 2.5997 -4.4994 -3.4917 47 1 4.3008 -4.3859 -2.9805 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:14 Heat of formation + Delta-G solvation = -72.432195 kcal Electronic energy + Delta-G solvation = -25279.826190 eV Core-core repulsion = 22003.873677 eV Total energy + Delta-G solvation = -3275.952513 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.183 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.61341 -40.21667 -38.11424 -35.69529 -35.34379 -33.06229 -31.51792 -30.82721 -30.17261 -29.31666 -26.89776 -24.82880 -23.93201 -23.20557 -22.70946 -22.06565 -21.42374 -20.01913 -18.90982 -18.29723 -16.98979 -16.51936 -16.50806 -16.15645 -15.95069 -15.68496 -15.20713 -15.02621 -14.86677 -14.63323 -14.23216 -14.08767 -13.92034 -13.60730 -13.36996 -13.15336 -12.96473 -12.93984 -12.76324 -12.43447 -12.33653 -12.17938 -12.12946 -11.96846 -11.76665 -11.60130 -11.58997 -11.32559 -11.22290 -10.95586 -10.81309 -10.71509 -10.64606 -9.59148 -9.28385 -8.85069 -6.32491 0.82215 0.94742 1.48423 1.61613 1.78456 2.33959 2.59571 2.69602 3.49517 3.63463 3.65204 3.78869 3.96966 4.05366 4.10633 4.16850 4.28919 4.34898 4.37348 4.40924 4.45905 4.49191 4.55246 4.60270 4.68564 4.70552 4.76015 4.86074 4.88411 4.95988 5.06751 5.11669 5.14283 5.17852 5.18853 5.21558 5.23660 5.33104 5.35131 5.43798 5.48267 5.52288 5.55828 5.66372 5.76129 5.82316 5.97593 6.15507 6.34360 6.53481 6.92029 7.15875 8.08151 Molecular weight = 300.18amu Principal moments of inertia in cm(-1) A = 0.015569 B = 0.004514 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.054807 B = 6201.559008 C = 7375.353525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.003 3.997 3 Si 1.114 2.886 4 H -0.268 1.268 5 H -0.264 1.264 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.048 3.952 10 C -0.214 4.214 11 C -0.119 4.119 12 C -0.211 4.211 13 C -0.174 4.174 14 C 0.008 3.992 15 O -0.327 6.327 16 C 0.081 3.919 17 H 0.060 0.940 18 C -0.134 4.134 19 C -0.105 4.105 20 C -0.076 4.076 21 H 0.093 0.907 22 C -0.121 4.121 23 C -0.113 4.113 24 C -0.125 4.125 25 C -0.108 4.108 26 C -0.073 4.073 27 H 0.073 0.927 28 C -0.105 4.105 29 H 0.280 0.720 30 H 0.092 0.908 31 H 0.117 0.883 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.058 0.942 46 H 0.048 0.952 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.048 -13.850 -7.808 18.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.211 4.211 3 Si 0.931 3.069 4 H -0.192 1.192 5 H -0.189 1.189 6 H -0.187 1.187 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.045 3.955 10 C -0.233 4.233 11 C -0.138 4.138 12 C -0.230 4.230 13 C -0.193 4.193 14 C -0.036 4.036 15 O -0.243 6.243 16 C 0.024 3.976 17 H 0.078 0.922 18 C -0.172 4.172 19 C -0.142 4.142 20 C -0.094 4.094 21 H 0.111 0.889 22 C -0.158 4.158 23 C -0.150 4.150 24 C -0.163 4.163 25 C -0.146 4.146 26 C -0.091 4.091 27 H 0.091 0.909 28 C -0.143 4.143 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.135 0.865 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.906 -12.070 -7.846 17.475 hybrid contribution -0.343 -1.458 0.280 1.524 sum 9.563 -13.528 -7.567 18.213 Atomic orbital electron populations 1.70586 1.08725 1.32766 1.32616 1.28337 0.95711 1.07115 0.89958 0.83055 0.74827 0.70087 0.78892 1.19194 1.18873 1.18736 1.20399 1.02908 0.95138 1.38933 0.92053 1.17500 0.93778 0.91372 0.92832 1.20661 1.04289 0.97710 1.00675 1.20619 1.00078 0.92759 1.00300 1.20589 1.02978 0.96795 1.02665 1.21023 1.01075 0.96471 1.00716 1.19352 0.96020 0.94178 0.94082 1.85967 1.55186 1.31366 1.51768 1.22529 0.97839 0.82609 0.94597 0.92225 1.21991 0.98506 0.97918 0.98750 1.21521 1.02085 0.94289 0.96311 1.21138 0.94359 0.99753 0.94123 0.88881 1.21689 0.96986 0.99936 0.97207 1.21493 0.97636 1.01352 0.94568 1.21599 0.95498 0.98834 1.00353 1.21515 0.97304 1.01177 0.94577 1.21075 0.98801 0.93656 0.95600 0.90875 1.21699 1.01283 0.99033 0.92284 0.90850 0.89033 0.86482 0.85509 0.85587 0.91833 0.93290 0.91348 0.90102 0.93407 0.91216 0.92027 0.90627 0.93550 0.91088 0.89933 0.92365 0.93315 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.81 12.39 21.83 0.27 -46.54 16 2 C 0.00 0.18 4.92 85.25 0.42 0.60 16 3 Si 1.11 46.26 30.00 68.60 2.06 48.32 16 4 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 7 C -0.54 -31.73 8.61 23.40 0.20 -31.53 16 8 H 0.06 3.64 7.77 -2.91 -0.02 3.62 16 9 C 0.05 2.73 5.25 -21.20 -0.11 2.62 16 10 C -0.21 -11.54 7.93 22.47 0.18 -11.36 16 11 C -0.12 -5.57 9.97 22.00 0.22 -5.35 16 12 C -0.21 -9.14 10.04 22.43 0.23 -8.92 16 13 C -0.17 -7.80 8.54 22.33 0.19 -7.61 16 14 C 0.01 0.43 6.69 23.08 0.15 0.58 16 15 O -0.33 -15.79 9.11 -89.60 -0.82 -16.61 16 16 C 0.08 2.86 2.09 30.63 0.06 2.93 16 17 H 0.06 2.12 5.96 -2.39 -0.01 2.10 16 18 C -0.13 -4.04 5.08 30.60 0.16 -3.89 16 19 C -0.10 -2.23 5.45 30.60 0.17 -2.06 16 20 C -0.08 -1.42 2.46 -10.79 -0.03 -1.45 16 21 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 22 C -0.12 -2.34 4.59 30.59 0.14 -2.20 16 23 C -0.11 -1.88 5.92 30.60 0.18 -1.70 16 24 C -0.13 -2.32 5.65 30.60 0.17 -2.15 16 25 C -0.11 -1.97 5.45 30.59 0.17 -1.80 16 26 C -0.07 -1.57 2.47 -10.79 -0.03 -1.60 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 C -0.11 -3.19 4.24 30.63 0.13 -3.06 16 29 H 0.28 16.58 6.80 -92.71 -0.63 15.95 16 30 H 0.09 5.15 6.67 -2.91 -0.02 5.13 16 31 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 32 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 33 H 0.13 4.84 5.67 -2.91 -0.02 4.82 16 34 H 0.06 2.00 6.43 -2.38 -0.02 1.99 16 35 H 0.05 1.62 7.55 -2.39 -0.02 1.60 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.05 1.18 4.81 -2.39 -0.01 1.17 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.05 1.06 6.43 -2.39 -0.02 1.04 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.07 2.18 4.81 -2.39 -0.01 2.17 16 Total: -1.00 -64.51 346.76 5.20 -59.31 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: 1.08 Total: 33.47 kcal Atomic # 6 Polarization: -80.55 SS G_CDS: 2.60 Total: -77.95 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.27 Total: -46.54 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.82 Total: -16.61 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.06 Total: 48.32 kcal Total: -64.51 5.20 -59.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.121 kcal (2) G-P(sol) polarization free energy of solvation -64.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds