Wall clock time and date at job start Tue Mar 31 2020 07:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00065 * 2 1 4 4 C 1.52991 * 109.47263 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46976 * 54.99939 * 4 3 2 6 6 O 1.42897 * 109.47170 * 295.00030 * 4 3 2 7 7 C 1.42904 * 113.99970 * 149.99934 * 6 4 3 8 8 C 1.50698 * 109.47210 * 175.00090 * 4 3 2 9 9 O 1.21279 * 119.99935 * 115.00133 * 8 4 3 10 10 N 1.34773 * 119.99970 * 295.27180 * 8 4 3 11 11 C 1.46929 * 120.63343 * 353.58968 * 10 8 4 12 12 C 1.52764 * 109.00865 * 233.58240 * 11 10 8 13 13 C 1.53041 * 109.38172 * 305.58345 * 12 11 10 14 14 C 1.53037 * 109.53592 * 61.23730 * 13 12 11 15 15 C 1.46931 * 120.63244 * 173.86181 * 10 8 4 16 16 H 1.08998 * 109.58586 * 246.16091 * 15 10 8 17 17 C 1.52998 * 109.58391 * 6.58478 * 15 10 8 18 18 N 1.46494 * 109.47297 * 292.95407 * 17 15 10 19 19 C 1.36935 * 119.99949 * 185.82267 * 18 17 15 20 20 H 1.08002 * 120.00551 * 0.02562 * 19 18 17 21 21 C 1.38816 * 119.99994 * 179.97438 * 19 18 17 22 22 N 1.31625 * 120.00085 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99906 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47073 * 90.00011 * 23 21 19 25 25 H 1.48506 * 109.46984 * 209.99860 * 23 21 19 26 26 H 1.48494 * 109.47071 * 329.99624 * 23 21 19 27 27 H 1.09008 * 109.46780 * 299.99537 * 1 2 3 28 28 H 1.09000 * 109.47630 * 59.99232 * 1 2 3 29 29 H 1.08996 * 109.47014 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46898 * 60.00125 * 3 2 1 31 31 H 1.08998 * 109.46733 * 300.00433 * 3 2 1 32 32 H 1.09005 * 109.47071 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47486 * 300.00000 * 7 6 4 34 34 H 1.09001 * 109.47457 * 60.00159 * 7 6 4 35 35 H 1.09003 * 109.57969 * 353.41536 * 11 10 8 36 36 H 1.08995 * 109.58891 * 113.83521 * 11 10 8 37 37 H 1.09004 * 109.56304 * 185.54660 * 12 11 10 38 38 H 1.08994 * 109.38533 * 65.51203 * 12 11 10 39 39 H 1.08997 * 109.45955 * 301.22153 * 13 12 11 40 40 H 1.08998 * 109.44649 * 181.25445 * 13 12 11 41 41 H 1.09002 * 109.49914 * 178.67841 * 14 13 12 42 42 H 1.09008 * 109.52248 * 58.60945 * 14 13 12 43 43 H 1.09003 * 109.47231 * 52.95624 * 17 15 10 44 44 H 1.08998 * 109.47084 * 172.95069 * 17 15 10 45 45 H 0.96997 * 120.00041 * 5.82762 * 18 17 15 46 46 H 0.97000 * 120.00047 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8507 0.5686 -0.8427 6 8 3.9658 0.5793 1.2201 7 6 5.1691 -0.1820 1.0987 8 6 4.1479 2.5560 -0.1245 9 8 4.8068 3.0104 0.7867 10 7 3.9588 3.2798 -1.2455 11 6 3.2786 2.6943 -2.4088 12 6 4.1656 2.8634 -3.6410 13 6 4.5319 4.3403 -3.8044 14 6 5.3131 4.8127 -2.5761 15 6 4.4342 4.6675 -1.3298 16 1 3.5813 5.3421 -1.4036 17 6 5.2530 5.0058 -0.0825 18 7 4.3754 5.0137 1.0905 19 6 4.8628 5.4088 2.3076 20 1 5.8941 5.7150 2.4029 21 6 4.0310 5.4169 3.4189 22 7 4.4996 5.7962 4.5890 23 14 2.2470 4.8880 3.2542 24 1 2.1399 3.4264 3.4937 25 1 1.4211 5.6149 4.2516 26 1 1.7618 5.2024 1.8864 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 5.4283 -0.6088 2.0676 33 1 5.0199 -0.9848 0.3766 34 1 5.9767 0.4665 0.7591 35 1 3.0997 1.6337 -2.2318 36 1 2.3295 3.2047 -2.5724 37 1 3.6295 2.5214 -4.5264 38 1 5.0744 2.2748 -3.5161 39 1 3.6215 4.9312 -3.9050 40 1 5.1464 4.4653 -4.6959 41 1 5.5939 5.8581 -2.7035 42 1 6.2115 4.2063 -2.4604 43 1 6.0342 4.2578 0.0533 44 1 5.7083 5.9888 -0.2023 45 1 3.4490 4.7390 1.0049 46 1 3.9183 5.8021 5.3655 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690479618.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:09 Heat of formation + Delta-G solvation = -60.900629 kcal Electronic energy + Delta-G solvation = -27412.938476 eV Core-core repulsion = 23726.636746 eV Total energy + Delta-G solvation = -3686.301730 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.55820 -38.34961 -37.38310 -36.47381 -34.60600 -32.96032 -32.06274 -30.42783 -30.19074 -26.89786 -26.43987 -25.89443 -24.57516 -23.46116 -22.48033 -21.29089 -20.52739 -19.10762 -17.64524 -17.02305 -16.68535 -16.32260 -15.78532 -15.45564 -15.26606 -14.77284 -14.57356 -14.45957 -14.30825 -13.98410 -13.84268 -13.56335 -13.09643 -12.80353 -12.65567 -12.49237 -12.33761 -12.25723 -11.86566 -11.75585 -11.32811 -11.27679 -11.09947 -10.99869 -10.85154 -10.70414 -10.62105 -10.28528 -10.01837 -9.90396 -9.74932 -9.38001 -8.74010 -8.30945 -8.21948 -6.77752 -5.54537 -2.80669 2.90827 3.15943 3.46557 3.54546 3.58658 3.78004 3.91111 4.60329 4.70575 4.77166 4.80022 4.89241 4.92320 4.97901 5.06892 5.19542 5.25283 5.28933 5.32313 5.38950 5.46793 5.49993 5.54661 5.62495 5.64021 5.68699 5.74364 5.79182 5.81704 5.89122 5.91949 5.98006 6.01517 6.12501 6.32902 6.52995 6.80552 6.99720 7.13258 7.24198 7.76261 8.20234 8.63623 8.74784 9.43978 10.17489 10.37284 11.65354 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.010345 B = 0.007934 C = 0.005643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.852347 B = 3528.371135 C = 4960.702969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.082 3.918 5 H 0.083 0.917 6 O -0.347 6.347 7 C 0.035 3.965 8 C 0.440 3.560 9 O -0.416 6.416 10 N -0.618 5.618 11 C 0.105 3.895 12 C -0.134 4.134 13 C -0.117 4.117 14 C -0.127 4.127 15 C 0.138 3.862 16 H 0.069 0.931 17 C 0.166 3.834 18 N -0.718 5.718 19 C -0.212 4.212 20 H 0.086 0.914 21 C -0.001 4.001 22 N -0.942 5.942 23 Si 0.880 3.120 24 H -0.282 1.282 25 H -0.295 1.295 26 H -0.285 1.285 27 H 0.043 0.957 28 H 0.040 0.960 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.037 0.963 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.045 0.955 44 H 0.026 0.974 45 H 0.355 0.645 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.716 -10.839 -20.201 23.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C 0.020 3.980 5 H 0.101 0.899 6 O -0.264 6.264 7 C -0.062 4.062 8 C 0.223 3.777 9 O -0.282 6.282 10 N -0.359 5.359 11 C -0.018 4.018 12 C -0.172 4.172 13 C -0.155 4.155 14 C -0.166 4.166 15 C 0.035 3.965 16 H 0.087 0.913 17 C 0.039 3.961 18 N -0.363 5.363 19 C -0.342 4.342 20 H 0.104 0.896 21 C -0.195 4.195 22 N -0.592 5.592 23 Si 0.711 3.289 24 H -0.209 1.209 25 H -0.222 1.222 26 H -0.212 1.212 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.043 0.957 45 H 0.188 0.812 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.150 -10.672 -19.253 22.400 hybrid contribution -1.488 -0.277 -0.315 1.546 sum -5.637 -10.949 -19.568 23.121 Atomic orbital electron populations 1.22756 0.80984 1.02700 1.00150 1.87884 1.19673 1.27199 1.95470 1.22661 0.91307 0.85484 1.01906 1.21955 0.93316 0.93208 0.89551 0.89901 1.88068 1.41806 1.66934 1.29586 1.22791 0.86910 0.94005 1.02462 1.20954 0.86196 0.87591 0.82947 1.91207 1.34215 1.65368 1.37372 1.48000 1.60580 1.13400 1.13928 1.21662 0.95427 0.98747 0.85981 1.21843 1.00391 0.97516 0.97486 1.21492 1.00378 0.95697 0.97929 1.21898 0.98779 1.01954 0.93942 1.21567 0.96946 0.81585 0.96409 0.91344 1.20837 0.93521 0.97666 0.84055 1.42643 1.08875 1.79055 1.05736 1.18984 0.97031 1.33801 0.84395 0.89578 1.24536 0.97295 1.02276 0.95376 1.69696 1.34958 1.55497 0.99072 0.86586 0.87289 0.78788 0.76188 1.20911 1.22204 1.21176 0.93847 0.94129 0.89534 0.91760 0.91271 0.89387 0.94457 0.93705 0.90157 0.91799 0.91043 0.91535 0.91870 0.91862 0.90713 0.91399 0.93769 0.95653 0.81187 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.42 10.67 -40.09 -0.43 -5.84 16 3 C 0.06 0.94 5.22 37.15 0.19 1.14 16 4 C 0.08 1.32 1.96 -27.89 -0.05 1.26 16 5 H 0.08 1.09 6.81 -51.93 -0.35 0.73 16 6 O -0.35 -6.56 9.85 -59.70 -0.59 -7.15 16 7 C 0.03 0.52 10.81 101.05 1.09 1.61 16 8 C 0.44 8.05 6.31 -10.99 -0.07 7.98 16 9 O -0.42 -9.79 10.17 -14.30 -0.15 -9.93 16 10 N -0.62 -9.20 2.98 -165.48 -0.49 -9.70 16 11 C 0.11 1.09 4.81 -3.93 -0.02 1.07 16 12 C -0.13 -1.15 6.06 -26.83 -0.16 -1.31 16 13 C -0.12 -1.07 5.89 -26.69 -0.16 -1.23 16 14 C -0.13 -1.50 5.37 -26.62 -0.14 -1.64 16 15 C 0.14 2.16 2.95 -67.60 -0.20 1.96 16 16 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 17 C 0.17 3.47 4.87 -4.05 -0.02 3.45 16 18 N -0.72 -18.50 2.96 -59.91 -0.18 -18.67 16 19 C -0.21 -6.47 10.17 -15.06 -0.15 -6.63 16 20 H 0.09 2.82 8.06 -52.49 -0.42 2.39 16 21 C 0.00 -0.03 5.50 -17.43 -0.10 -0.12 16 22 N -0.94 -31.66 13.97 55.49 0.78 -30.89 16 23 Si 0.88 24.27 27.74 -169.99 -4.71 19.55 16 24 H -0.28 -7.94 7.11 56.52 0.40 -7.53 16 25 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 26 H -0.28 -7.36 6.52 56.52 0.37 -6.99 16 27 H 0.04 0.47 8.14 -51.92 -0.42 0.04 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 0.84 5.86 -51.93 -0.30 0.53 16 32 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.04 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.75 5.12 -51.93 -0.27 0.49 16 36 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 43 H 0.04 1.01 6.50 -51.93 -0.34 0.67 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.36 9.17 4.68 -40.82 -0.19 8.97 16 46 H 0.25 8.19 8.31 -40.82 -0.34 7.85 16 LS Contribution 355.49 15.07 5.36 5.36 Total: -1.00 -37.74 355.49 -6.89 -44.63 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -7.80 Total: 3.68 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 1.32 Total: 8.97 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: 0.11 Total: -59.25 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -1.16 Total: -22.93 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -4.71 Total: 19.55 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.74 -6.89 -44.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690479618.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.275 kcal (2) G-P(sol) polarization free energy of solvation -37.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds