Wall clock time and date at job start Tue Mar 31 2020 07:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00065 * 2 1 4 4 C 1.52991 * 109.47263 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46976 * 54.99939 * 4 3 2 6 6 O 1.42897 * 109.47170 * 295.00030 * 4 3 2 7 7 C 1.42904 * 113.99970 * 149.99934 * 6 4 3 8 8 C 1.50698 * 109.47210 * 175.00090 * 4 3 2 9 9 O 1.21279 * 119.99935 * 115.00133 * 8 4 3 10 10 N 1.34773 * 119.99970 * 295.27180 * 8 4 3 11 11 C 1.46929 * 120.63343 * 353.58968 * 10 8 4 12 12 C 1.52764 * 109.00865 * 233.58240 * 11 10 8 13 13 C 1.53041 * 109.38172 * 305.58345 * 12 11 10 14 14 C 1.53037 * 109.53592 * 61.23730 * 13 12 11 15 15 C 1.46931 * 120.63244 * 173.86181 * 10 8 4 16 16 H 1.08998 * 109.58586 * 246.16091 * 15 10 8 17 17 C 1.52998 * 109.58391 * 6.58478 * 15 10 8 18 18 N 1.46494 * 109.47297 * 292.95407 * 17 15 10 19 19 C 1.36935 * 119.99949 * 185.82267 * 18 17 15 20 20 H 1.08002 * 120.00551 * 0.02562 * 19 18 17 21 21 C 1.38816 * 119.99994 * 179.97438 * 19 18 17 22 22 N 1.31625 * 120.00085 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99906 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47073 * 90.00011 * 23 21 19 25 25 H 1.48506 * 109.46984 * 209.99860 * 23 21 19 26 26 H 1.48494 * 109.47071 * 329.99624 * 23 21 19 27 27 H 1.09008 * 109.46780 * 299.99537 * 1 2 3 28 28 H 1.09000 * 109.47630 * 59.99232 * 1 2 3 29 29 H 1.08996 * 109.47014 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46898 * 60.00125 * 3 2 1 31 31 H 1.08998 * 109.46733 * 300.00433 * 3 2 1 32 32 H 1.09005 * 109.47071 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47486 * 300.00000 * 7 6 4 34 34 H 1.09001 * 109.47457 * 60.00159 * 7 6 4 35 35 H 1.09003 * 109.57969 * 353.41536 * 11 10 8 36 36 H 1.08995 * 109.58891 * 113.83521 * 11 10 8 37 37 H 1.09004 * 109.56304 * 185.54660 * 12 11 10 38 38 H 1.08994 * 109.38533 * 65.51203 * 12 11 10 39 39 H 1.08997 * 109.45955 * 301.22153 * 13 12 11 40 40 H 1.08998 * 109.44649 * 181.25445 * 13 12 11 41 41 H 1.09002 * 109.49914 * 178.67841 * 14 13 12 42 42 H 1.09008 * 109.52248 * 58.60945 * 14 13 12 43 43 H 1.09003 * 109.47231 * 52.95624 * 17 15 10 44 44 H 1.08998 * 109.47084 * 172.95069 * 17 15 10 45 45 H 0.96997 * 120.00041 * 5.82762 * 18 17 15 46 46 H 0.97000 * 120.00047 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8507 0.5686 -0.8427 6 8 3.9658 0.5793 1.2201 7 6 5.1691 -0.1820 1.0987 8 6 4.1479 2.5560 -0.1245 9 8 4.8068 3.0104 0.7867 10 7 3.9588 3.2798 -1.2455 11 6 3.2786 2.6943 -2.4088 12 6 4.1656 2.8634 -3.6410 13 6 4.5319 4.3403 -3.8044 14 6 5.3131 4.8127 -2.5761 15 6 4.4342 4.6675 -1.3298 16 1 3.5813 5.3421 -1.4036 17 6 5.2530 5.0058 -0.0825 18 7 4.3754 5.0137 1.0905 19 6 4.8628 5.4088 2.3076 20 1 5.8941 5.7150 2.4029 21 6 4.0310 5.4169 3.4189 22 7 4.4996 5.7962 4.5890 23 14 2.2470 4.8880 3.2542 24 1 2.1399 3.4264 3.4937 25 1 1.4211 5.6149 4.2516 26 1 1.7618 5.2024 1.8864 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 5.4283 -0.6088 2.0676 33 1 5.0199 -0.9848 0.3766 34 1 5.9767 0.4665 0.7591 35 1 3.0997 1.6337 -2.2318 36 1 2.3295 3.2047 -2.5724 37 1 3.6295 2.5214 -4.5264 38 1 5.0744 2.2748 -3.5161 39 1 3.6215 4.9312 -3.9050 40 1 5.1464 4.4653 -4.6959 41 1 5.5939 5.8581 -2.7035 42 1 6.2115 4.2063 -2.4604 43 1 6.0342 4.2578 0.0533 44 1 5.7083 5.9888 -0.2023 45 1 3.4490 4.7390 1.0049 46 1 3.9183 5.8021 5.3655 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690479618.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:08 Heat of formation + Delta-G solvation = -89.157546 kcal Electronic energy + Delta-G solvation = -27414.163788 eV Core-core repulsion = 23726.636746 eV Total energy + Delta-G solvation = -3687.527042 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.85272 -39.50235 -38.50010 -37.73427 -36.46548 -34.23545 -33.74604 -32.11037 -31.39250 -28.07038 -27.67064 -27.08985 -25.88725 -24.60655 -24.06993 -22.84832 -21.55732 -20.42531 -19.61127 -18.36454 -17.87777 -17.51144 -16.90497 -16.67141 -16.56559 -16.30103 -15.95354 -15.72146 -15.62778 -15.29268 -15.02182 -14.86675 -14.57152 -14.23928 -14.02721 -13.81189 -13.74633 -13.43149 -13.36913 -12.96478 -12.78567 -12.68619 -12.36360 -12.23752 -12.10124 -12.00427 -11.87075 -11.73890 -11.48766 -11.41771 -11.24317 -10.95482 -10.74261 -9.77513 -9.61181 -8.89339 -7.98340 -5.20068 1.21506 1.34613 1.35828 1.62621 1.93703 2.48526 2.69636 2.76432 3.34863 3.53235 3.65385 3.74165 3.86152 3.90784 3.99555 4.06432 4.20090 4.27832 4.30098 4.32476 4.38858 4.47034 4.51049 4.51994 4.55444 4.59637 4.72049 4.76663 4.83003 4.84552 4.96010 5.02569 5.12162 5.15481 5.25887 5.30981 5.52306 5.73143 5.77874 5.99131 6.07015 6.25107 6.52115 7.13699 7.40425 7.92637 8.10090 9.25328 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.010345 B = 0.007934 C = 0.005643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.852347 B = 3528.371135 C = 4960.702969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.397 6.397 3 C 0.070 3.930 4 C 0.081 3.919 5 H 0.118 0.882 6 O -0.387 6.387 7 C 0.033 3.967 8 C 0.444 3.556 9 O -0.488 6.488 10 N -0.611 5.611 11 C 0.094 3.906 12 C -0.129 4.129 13 C -0.112 4.112 14 C -0.120 4.120 15 C 0.143 3.857 16 H 0.075 0.925 17 C 0.166 3.834 18 N -0.718 5.718 19 C -0.195 4.195 20 H 0.047 0.953 21 C -0.073 4.073 22 N -0.993 5.993 23 Si 0.951 3.049 24 H -0.294 1.294 25 H -0.292 1.292 26 H -0.256 1.256 27 H 0.033 0.967 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.029 0.971 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.031 0.969 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.058 0.942 43 H 0.021 0.979 44 H 0.022 0.978 45 H 0.356 0.644 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.133 -12.277 -24.590 28.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.317 6.317 3 C -0.007 4.007 4 C 0.019 3.981 5 H 0.135 0.865 6 O -0.304 6.304 7 C -0.063 4.063 8 C 0.229 3.771 9 O -0.358 6.358 10 N -0.351 5.351 11 C -0.027 4.027 12 C -0.167 4.167 13 C -0.150 4.150 14 C -0.159 4.159 15 C 0.040 3.960 16 H 0.093 0.907 17 C 0.040 3.960 18 N -0.362 5.362 19 C -0.326 4.326 20 H 0.066 0.934 21 C -0.263 4.263 22 N -0.646 5.646 23 Si 0.780 3.220 24 H -0.221 1.221 25 H -0.219 1.219 26 H -0.181 1.181 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.125 0.875 30 H 0.047 0.953 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.123 0.877 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.039 0.961 44 H 0.040 0.960 45 H 0.189 0.811 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.591 -12.121 -23.769 27.483 hybrid contribution -0.632 0.079 0.931 1.128 sum -7.223 -12.042 -22.837 26.809 Atomic orbital electron populations 1.23020 0.79043 1.04390 1.00924 1.87853 1.21749 1.26493 1.95562 1.22573 0.90393 0.86030 1.01723 1.22111 0.94141 0.92037 0.89816 0.86472 1.88013 1.43033 1.67642 1.31755 1.22915 0.85468 0.94268 1.03666 1.21534 0.84467 0.88261 0.82848 1.91193 1.37474 1.67479 1.39702 1.48152 1.59642 1.12822 1.14466 1.22093 0.96306 0.99603 0.84705 1.21843 1.00163 0.97067 0.97598 1.21495 1.00653 0.96115 0.96722 1.21861 0.98055 1.02598 0.93380 1.21464 0.97055 0.82267 0.95211 0.90684 1.20890 0.93489 0.96643 0.84994 1.42541 1.09359 1.78992 1.05329 1.18952 0.95291 1.31783 0.86614 0.93448 1.25304 1.02199 1.03749 0.95059 1.69879 1.36669 1.58076 0.99973 0.85440 0.81720 0.77248 0.77585 1.22130 1.21862 1.18069 0.94807 0.91589 0.87496 0.95294 0.88004 0.89179 0.91047 0.95042 0.88698 0.89631 0.87720 0.92091 0.90808 0.89869 0.89965 0.92345 0.96070 0.96044 0.81082 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -10.12 10.67 -144.34 -1.54 -11.65 16 3 C 0.07 1.92 5.22 71.98 0.38 2.29 16 4 C 0.08 2.45 1.96 29.84 0.06 2.51 16 5 H 0.12 2.68 6.81 -2.38 -0.02 2.67 16 6 O -0.39 -14.61 9.85 -125.58 -1.24 -15.84 16 7 C 0.03 0.96 10.81 113.37 1.23 2.19 16 8 C 0.44 15.92 6.31 87.66 0.55 16.47 16 9 O -0.49 -23.66 10.17 15.97 0.16 -23.50 16 10 N -0.61 -16.75 2.98 -795.85 -2.37 -19.12 16 11 C 0.09 1.50 4.81 86.22 0.42 1.92 16 12 C -0.13 -1.53 6.06 30.53 0.19 -1.34 16 13 C -0.11 -1.51 5.89 30.62 0.18 -1.33 16 14 C -0.12 -2.53 5.37 30.67 0.16 -2.37 16 15 C 0.14 4.25 2.95 44.97 0.13 4.38 16 16 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 17 C 0.17 7.08 4.87 86.38 0.42 7.50 16 18 N -0.72 -37.87 2.96 -343.46 -1.02 -38.88 16 19 C -0.19 -12.47 10.17 84.03 0.85 -11.61 16 20 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16 21 C -0.07 -4.83 5.50 84.86 0.47 -4.37 16 22 N -0.99 -69.78 13.97 21.65 0.30 -69.48 16 23 Si 0.95 51.85 27.74 68.60 1.90 53.76 16 24 H -0.29 -16.46 7.11 99.48 0.71 -15.75 16 25 H -0.29 -15.61 7.11 99.48 0.71 -14.90 16 26 H -0.26 -12.48 6.52 99.48 0.65 -11.83 16 27 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.11 1.44 8.14 -2.39 -0.02 1.43 16 30 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.10 2.04 5.86 -2.39 -0.01 2.02 16 32 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 33 H 0.07 1.56 8.09 -2.39 -0.02 1.54 16 34 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.09 1.28 5.12 -2.39 -0.01 1.27 16 36 H 0.09 1.09 8.09 -2.39 -0.02 1.07 16 37 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 43 H 0.02 1.02 6.50 -2.39 -0.02 1.01 16 44 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.36 18.37 4.68 -92.71 -0.43 17.93 16 46 H 0.25 16.94 8.31 -92.71 -0.77 16.17 16 Total: -1.00 -88.79 355.49 2.95 -85.84 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.47 Total: 21.00 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 6.28 Total: 17.88 kcal Atomic # 7 Polarization: -124.40 SS G_CDS: -3.08 Total: -127.48 kcal Atomic # 8 Polarization: -48.38 SS G_CDS: -2.61 Total: -50.99 kcal Atomic # 14 Polarization: 51.85 SS G_CDS: 1.90 Total: 53.76 kcal Total: -88.79 2.95 -85.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690479618.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.320 kcal (2) G-P(sol) polarization free energy of solvation -88.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds