Wall clock time and date at job start Tue Mar 31 2020 07:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47430 * 2 1 4 4 C 1.42898 * 114.00103 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46934 * 179.97438 * 4 3 2 6 6 O 1.42903 * 109.47551 * 64.99615 * 5 4 3 7 7 C 1.42898 * 114.00323 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46855 * 330.00370 * 7 6 5 9 9 C 1.52996 * 109.47211 * 90.00214 * 7 6 5 10 10 C 1.50702 * 109.46959 * 210.00559 * 7 6 5 11 11 O 1.21273 * 120.00299 * 359.97438 * 10 7 6 12 12 N 1.34778 * 119.99613 * 180.02562 * 10 7 6 13 13 C 1.46498 * 119.99714 * 179.97438 * 12 10 7 14 14 H 1.09003 * 110.64397 * 36.68895 * 13 12 10 15 15 C 1.55158 * 110.72023 * 160.02257 * 13 12 10 16 16 C 1.54909 * 101.58340 * 153.86277 * 15 13 12 17 17 N 1.47421 * 104.83642 * 322.99483 * 16 15 13 18 18 C 1.36930 * 125.65293 * 204.15846 * 17 16 15 19 19 H 1.08002 * 120.00334 * 161.47271 * 18 17 16 20 20 C 1.38815 * 119.99801 * 341.47563 * 18 17 16 21 21 N 1.31624 * 119.99698 * 157.61524 * 20 18 17 22 22 Si 1.86797 * 120.00072 * 337.61645 * 20 18 17 23 23 H 1.48499 * 109.47027 * 84.53694 * 22 20 18 24 24 H 1.48500 * 109.47388 * 204.53813 * 22 20 18 25 25 H 1.48505 * 109.46967 * 324.53415 * 22 20 18 26 26 C 1.47027 * 108.69998 * 24.12700 * 17 16 15 27 27 H 1.09000 * 109.47082 * 300.00172 * 1 2 3 28 28 H 1.08998 * 109.46929 * 60.00079 * 1 2 3 29 29 H 1.09003 * 109.47416 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47419 * 120.00074 * 2 1 3 31 31 H 1.09000 * 109.47082 * 239.99828 * 2 1 3 32 32 H 1.08999 * 109.47037 * 299.99236 * 4 3 2 33 33 H 1.08994 * 109.47390 * 59.99543 * 4 3 2 34 34 H 1.09004 * 109.47036 * 185.00011 * 5 4 3 35 35 H 1.09000 * 109.47353 * 304.99782 * 5 4 3 36 36 H 1.09002 * 109.46960 * 59.99529 * 9 7 6 37 37 H 1.08992 * 109.47240 * 180.02562 * 9 7 6 38 38 H 1.09007 * 109.46853 * 300.00563 * 9 7 6 39 39 H 0.97000 * 120.00101 * 359.97438 * 12 10 7 40 40 H 1.08996 * 111.00564 * 271.94358 * 15 13 12 41 41 H 1.09010 * 111.00294 * 35.79172 * 15 13 12 42 42 H 1.08996 * 110.37126 * 204.15094 * 16 15 13 43 43 H 1.09002 * 110.45619 * 81.87908 * 16 15 13 44 44 H 0.97002 * 119.99344 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.88031 * 239.52748 * 26 17 16 46 46 H 1.08993 * 109.88620 * 118.36271 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8254 2.9383 -0.0012 6 8 3.3985 3.5458 1.2198 7 6 3.7203 4.9344 1.3218 8 1 4.6323 5.1381 0.7606 9 6 2.5721 5.7674 0.7487 10 6 3.9299 5.2964 2.7695 11 8 3.8145 4.4490 3.6294 12 7 4.2445 6.5623 3.1088 13 6 4.4476 6.9144 4.5163 14 1 4.9384 6.1000 5.0492 15 6 5.2641 8.2279 4.6412 16 6 4.7912 8.7584 6.0176 17 7 3.3590 8.4151 6.0827 18 6 2.4196 9.0518 6.8489 19 1 1.3701 8.9408 6.6196 20 6 2.8163 9.8401 7.9204 21 7 2.0162 10.7798 8.3779 22 14 4.4857 9.5674 8.7131 23 1 5.5220 10.3114 7.9531 24 1 4.4538 10.0559 10.1150 25 1 4.8083 8.1178 8.7013 26 6 3.1061 7.2762 5.1878 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.8340 0.9765 0.8892 33 1 3.8333 0.9766 -0.8907 34 1 4.9082 3.0253 -0.0912 35 1 3.3493 3.4411 -0.8430 36 1 1.6601 5.5636 1.3098 37 1 2.8177 6.8265 0.8260 38 1 2.4205 5.5054 -0.2985 39 1 4.3364 7.2402 2.4211 40 1 6.3347 8.0232 4.6481 41 1 5.0065 8.9254 3.8441 42 1 4.9253 9.8386 6.0744 43 1 5.3362 8.2664 6.8233 44 1 2.2933 11.3304 9.1269 45 1 2.3754 7.5561 4.4290 46 1 2.7388 6.4268 5.7636 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732153294.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:55 Heat of formation + Delta-G solvation = -100.346922 kcal Electronic energy + Delta-G solvation = -24755.306774 eV Core-core repulsion = 21067.294525 eV Total energy + Delta-G solvation = -3688.012249 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.05118 -38.67376 -37.84546 -37.02890 -34.18531 -32.67794 -32.02999 -31.19406 -29.52313 -29.05407 -27.78861 -24.88250 -23.83486 -23.06018 -22.75578 -21.18445 -20.64427 -19.84660 -17.56694 -17.45451 -17.12150 -16.70714 -16.22506 -15.82375 -15.51398 -15.20402 -14.93371 -14.58949 -14.18376 -13.75614 -13.63392 -13.47786 -12.99281 -12.87648 -12.77078 -12.55232 -12.49017 -12.35393 -11.93397 -11.87030 -11.68275 -11.49725 -11.45594 -11.23634 -11.14800 -10.99159 -10.71286 -10.13318 -10.06741 -10.01738 -9.88527 -9.47315 -9.39034 -8.91025 -8.62874 -7.02685 -5.92235 -3.22665 2.66708 2.85165 3.35180 3.36409 3.50514 3.53584 3.73231 4.52559 4.56904 4.68000 4.71822 4.76319 4.79838 4.88327 4.94116 5.01747 5.02436 5.05650 5.08741 5.11588 5.30317 5.35099 5.41700 5.45326 5.47302 5.52497 5.56087 5.64136 5.86110 5.86834 5.96563 5.96805 6.15674 6.38511 6.54339 6.60087 6.75556 6.78132 6.89299 6.97543 7.60958 7.73086 8.32351 8.35174 8.85893 9.70858 10.18616 11.23906 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.026475 B = 0.002639 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.343034 B =10607.914896 C =11017.070847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.065 3.935 5 C 0.061 3.939 6 O -0.347 6.347 7 C 0.072 3.928 8 H 0.084 0.916 9 C -0.170 4.170 10 C 0.512 3.488 11 O -0.517 6.517 12 N -0.716 5.716 13 C 0.132 3.868 14 H 0.094 0.906 15 C -0.135 4.135 16 C 0.112 3.888 17 N -0.608 5.608 18 C -0.240 4.240 19 H 0.092 0.908 20 C 0.021 3.979 21 N -0.909 5.909 22 Si 0.882 3.118 23 H -0.285 1.285 24 H -0.302 1.302 25 H -0.276 1.276 26 C 0.127 3.873 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.398 0.602 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.028 0.972 44 H 0.263 0.737 45 H 0.036 0.964 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.026 -16.264 -22.660 28.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.299 6.299 4 C -0.011 4.011 5 C -0.016 4.016 6 O -0.265 6.265 7 C 0.010 3.990 8 H 0.102 0.898 9 C -0.228 4.228 10 C 0.297 3.703 11 O -0.391 6.391 12 N -0.369 5.369 13 C 0.028 3.972 14 H 0.112 0.888 15 C -0.174 4.174 16 C -0.014 4.014 17 N -0.336 5.336 18 C -0.367 4.367 19 H 0.110 0.890 20 C -0.178 4.178 21 N -0.553 5.553 22 Si 0.713 3.287 23 H -0.212 1.212 24 H -0.230 1.230 25 H -0.202 1.202 26 C 0.001 3.999 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.233 0.767 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.598 -16.690 -21.702 27.944 hybrid contribution 1.268 0.127 0.045 1.276 sum 6.866 -16.563 -21.657 28.115 Atomic orbital electron populations 1.21737 0.93668 1.02145 1.03356 1.22456 0.95803 0.83851 0.99859 1.87978 1.20362 1.26218 1.95367 1.22478 0.82400 0.95379 1.00882 1.22627 0.98193 0.92846 0.87888 1.88144 1.80077 1.20770 1.37485 1.21894 0.98917 0.84006 0.94135 0.89822 1.22232 0.99211 0.99509 1.01838 1.20337 0.77011 0.82639 0.90362 1.90736 1.48711 1.48609 1.51012 1.45953 1.71870 1.09995 1.09106 1.22064 0.97362 0.97247 0.80546 0.88766 1.23024 0.98854 0.95834 0.99705 1.21946 0.86490 0.99471 0.93457 1.44752 1.04182 1.33897 1.50723 1.18652 0.88804 1.22662 1.06566 0.88995 1.25005 0.97396 0.97629 0.97740 1.69847 1.37773 1.19735 1.27927 0.86983 0.85067 0.78307 0.78381 1.21207 1.22991 1.20161 1.21692 0.94158 0.90690 0.93403 0.91538 0.91945 0.91195 0.93310 0.93691 0.92183 0.91891 0.91716 0.92247 0.90750 0.90894 0.91348 0.76715 0.90973 0.90582 0.91842 0.95434 0.92719 0.94579 0.94485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.15 0.38 -0.77 16 2 C 0.06 0.47 6.66 37.15 0.25 0.72 16 3 O -0.38 -4.25 10.31 -40.08 -0.41 -4.66 16 4 C 0.07 0.58 6.32 37.16 0.23 0.81 16 5 C 0.06 0.55 6.13 37.16 0.23 0.77 16 6 O -0.35 -4.57 9.49 -59.73 -0.57 -5.14 16 7 C 0.07 0.80 3.14 -27.88 -0.09 0.71 16 8 H 0.08 0.65 7.79 -51.93 -0.40 0.24 16 9 C -0.17 -1.61 9.42 37.16 0.35 -1.26 16 10 C 0.51 7.62 7.23 -10.98 -0.08 7.54 16 11 O -0.52 -10.25 16.22 -14.35 -0.23 -10.48 16 12 N -0.72 -9.56 5.02 -52.03 -0.26 -9.82 16 13 C 0.13 2.23 3.24 -66.10 -0.21 2.02 16 14 H 0.09 1.70 7.69 -51.93 -0.40 1.30 16 15 C -0.14 -2.14 6.69 -24.58 -0.16 -2.30 16 16 C 0.11 2.41 4.70 -2.53 -0.01 2.39 16 17 N -0.61 -15.07 3.21 -170.07 -0.55 -15.62 16 18 C -0.24 -6.97 10.57 -15.06 -0.16 -7.13 16 19 H 0.09 2.84 8.06 -52.49 -0.42 2.42 16 20 C 0.02 0.61 5.43 -17.43 -0.09 0.52 16 21 N -0.91 -28.38 13.97 55.49 0.78 -27.61 16 22 Si 0.88 22.84 24.27 -169.99 -4.13 18.72 16 23 H -0.29 -6.97 6.49 56.52 0.37 -6.60 16 24 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 25 H -0.28 -7.12 6.66 56.52 0.38 -6.74 16 26 C 0.13 2.69 6.99 -3.06 -0.02 2.67 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.56 7.56 -51.93 -0.39 0.17 16 38 H 0.07 0.53 7.87 -51.92 -0.41 0.12 16 39 H 0.40 3.95 7.93 -40.82 -0.32 3.63 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 1.07 8.00 -51.92 -0.42 0.66 16 42 H 0.06 1.43 6.63 -51.93 -0.34 1.09 16 43 H 0.03 0.62 5.57 -51.93 -0.29 0.34 16 44 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 45 H 0.04 0.76 8.03 -51.93 -0.42 0.34 16 46 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 370.37 15.07 5.58 5.58 Total: -1.00 -36.64 370.37 -7.25 -43.89 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -8.07 Total: -1.56 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 0.61 Total: 6.71 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.03 Total: -53.04 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -1.21 Total: -20.29 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.13 Total: 18.72 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.64 -7.25 -43.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732153294.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.461 kcal (2) G-P(sol) polarization free energy of solvation -36.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds