Wall clock time and date at job start Tue Mar 31 2020 07:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47430 * 2 1 4 4 C 1.42898 * 114.00103 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46934 * 179.97438 * 4 3 2 6 6 O 1.42903 * 109.47551 * 64.99615 * 5 4 3 7 7 C 1.42898 * 114.00323 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46855 * 330.00370 * 7 6 5 9 9 C 1.52996 * 109.47211 * 90.00214 * 7 6 5 10 10 C 1.50702 * 109.46959 * 210.00559 * 7 6 5 11 11 O 1.21273 * 120.00299 * 359.97438 * 10 7 6 12 12 N 1.34778 * 119.99613 * 180.02562 * 10 7 6 13 13 C 1.46498 * 119.99714 * 179.97438 * 12 10 7 14 14 H 1.09003 * 110.64397 * 36.68895 * 13 12 10 15 15 C 1.55158 * 110.72023 * 160.02257 * 13 12 10 16 16 C 1.54909 * 101.58340 * 153.86277 * 15 13 12 17 17 N 1.47421 * 104.83642 * 322.99483 * 16 15 13 18 18 C 1.36930 * 125.65293 * 204.15846 * 17 16 15 19 19 H 1.08002 * 120.00334 * 161.47271 * 18 17 16 20 20 C 1.38815 * 119.99801 * 341.47563 * 18 17 16 21 21 N 1.31624 * 119.99698 * 157.61524 * 20 18 17 22 22 Si 1.86797 * 120.00072 * 337.61645 * 20 18 17 23 23 H 1.48499 * 109.47027 * 84.53694 * 22 20 18 24 24 H 1.48500 * 109.47388 * 204.53813 * 22 20 18 25 25 H 1.48505 * 109.46967 * 324.53415 * 22 20 18 26 26 C 1.47027 * 108.69998 * 24.12700 * 17 16 15 27 27 H 1.09000 * 109.47082 * 300.00172 * 1 2 3 28 28 H 1.08998 * 109.46929 * 60.00079 * 1 2 3 29 29 H 1.09003 * 109.47416 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47419 * 120.00074 * 2 1 3 31 31 H 1.09000 * 109.47082 * 239.99828 * 2 1 3 32 32 H 1.08999 * 109.47037 * 299.99236 * 4 3 2 33 33 H 1.08994 * 109.47390 * 59.99543 * 4 3 2 34 34 H 1.09004 * 109.47036 * 185.00011 * 5 4 3 35 35 H 1.09000 * 109.47353 * 304.99782 * 5 4 3 36 36 H 1.09002 * 109.46960 * 59.99529 * 9 7 6 37 37 H 1.08992 * 109.47240 * 180.02562 * 9 7 6 38 38 H 1.09007 * 109.46853 * 300.00563 * 9 7 6 39 39 H 0.97000 * 120.00101 * 359.97438 * 12 10 7 40 40 H 1.08996 * 111.00564 * 271.94358 * 15 13 12 41 41 H 1.09010 * 111.00294 * 35.79172 * 15 13 12 42 42 H 1.08996 * 110.37126 * 204.15094 * 16 15 13 43 43 H 1.09002 * 110.45619 * 81.87908 * 16 15 13 44 44 H 0.97002 * 119.99344 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.88031 * 239.52748 * 26 17 16 46 46 H 1.08993 * 109.88620 * 118.36271 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8254 2.9383 -0.0012 6 8 3.3985 3.5458 1.2198 7 6 3.7203 4.9344 1.3218 8 1 4.6323 5.1381 0.7606 9 6 2.5721 5.7674 0.7487 10 6 3.9299 5.2964 2.7695 11 8 3.8145 4.4490 3.6294 12 7 4.2445 6.5623 3.1088 13 6 4.4476 6.9144 4.5163 14 1 4.9384 6.1000 5.0492 15 6 5.2641 8.2279 4.6412 16 6 4.7912 8.7584 6.0176 17 7 3.3590 8.4151 6.0827 18 6 2.4196 9.0518 6.8489 19 1 1.3701 8.9408 6.6196 20 6 2.8163 9.8401 7.9204 21 7 2.0162 10.7798 8.3779 22 14 4.4857 9.5674 8.7131 23 1 5.5220 10.3114 7.9531 24 1 4.4538 10.0559 10.1150 25 1 4.8083 8.1178 8.7013 26 6 3.1061 7.2762 5.1878 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.8340 0.9765 0.8892 33 1 3.8333 0.9766 -0.8907 34 1 4.9082 3.0253 -0.0912 35 1 3.3493 3.4411 -0.8430 36 1 1.6601 5.5636 1.3098 37 1 2.8177 6.8265 0.8260 38 1 2.4205 5.5054 -0.2985 39 1 4.3364 7.2402 2.4211 40 1 6.3347 8.0232 4.6481 41 1 5.0065 8.9254 3.8441 42 1 4.9253 9.8386 6.0744 43 1 5.3362 8.2664 6.8233 44 1 2.2933 11.3304 9.1269 45 1 2.3754 7.5561 4.4290 46 1 2.7388 6.4268 5.7636 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732153294.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:55 Heat of formation + Delta-G solvation = -128.405861 kcal Electronic energy + Delta-G solvation = -24756.523501 eV Core-core repulsion = 21067.294525 eV Total energy + Delta-G solvation = -3689.228976 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.21643 -39.63694 -39.03019 -38.10393 -35.70159 -34.20883 -33.19222 -32.14542 -31.11764 -29.82402 -29.35297 -26.44997 -25.13040 -23.68407 -23.44949 -22.85381 -21.98326 -21.25024 -19.14703 -18.34332 -18.20211 -17.79588 -17.38799 -17.20082 -16.66232 -16.56563 -15.85952 -15.67268 -15.42924 -15.31267 -15.07643 -14.50174 -14.38883 -14.07055 -13.83630 -13.71851 -13.57711 -13.29498 -13.16673 -13.13794 -13.04630 -12.62931 -12.58333 -12.43679 -12.30564 -12.17130 -12.12140 -11.84133 -11.67041 -11.51351 -10.98318 -10.85221 -10.57456 -10.45141 -10.16061 -9.10766 -8.20689 -5.48844 1.28152 1.39679 1.48313 1.53978 1.83133 2.39073 2.75793 2.86713 3.02435 3.32192 3.57655 3.73419 3.83582 3.93810 4.02728 4.13227 4.14132 4.15215 4.25667 4.33494 4.34523 4.45842 4.48991 4.49394 4.53912 4.65503 4.78924 4.79417 4.82965 4.89181 4.90240 4.92911 4.98344 5.02515 5.15001 5.23602 5.25309 5.47761 5.63356 6.06398 6.10703 6.31407 6.57922 6.71802 7.24508 7.49261 8.04160 8.99173 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.026475 B = 0.002639 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.343034 B =10607.914896 C =11017.070847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.411 6.411 4 C 0.058 3.942 5 C 0.055 3.945 6 O -0.388 6.388 7 C 0.078 3.922 8 H 0.129 0.871 9 C -0.166 4.166 10 C 0.507 3.493 11 O -0.575 6.575 12 N -0.698 5.698 13 C 0.147 3.853 14 H 0.084 0.916 15 C -0.112 4.112 16 C 0.098 3.902 17 N -0.625 5.625 18 C -0.241 4.241 19 H 0.053 0.947 20 C -0.036 4.036 21 N -0.955 5.955 22 Si 0.949 3.051 23 H -0.255 1.255 24 H -0.307 1.307 25 H -0.276 1.276 26 C 0.125 3.875 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.042 0.958 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.420 0.580 40 H 0.113 0.887 41 H 0.101 0.899 42 H 0.055 0.945 43 H 0.024 0.976 44 H 0.264 0.736 45 H 0.035 0.965 46 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.110 -16.563 -25.618 31.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.331 6.331 4 C -0.018 4.018 5 C -0.021 4.021 6 O -0.307 6.307 7 C 0.017 3.983 8 H 0.147 0.853 9 C -0.224 4.224 10 C 0.294 3.706 11 O -0.453 6.453 12 N -0.352 5.352 13 C 0.041 3.959 14 H 0.102 0.898 15 C -0.150 4.150 16 C -0.026 4.026 17 N -0.352 5.352 18 C -0.370 4.370 19 H 0.071 0.929 20 C -0.230 4.230 21 N -0.601 5.601 22 Si 0.777 3.223 23 H -0.180 1.180 24 H -0.235 1.235 25 H -0.202 1.202 26 C -0.002 4.002 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.259 0.741 40 H 0.131 0.869 41 H 0.119 0.881 42 H 0.073 0.927 43 H 0.042 0.958 44 H 0.073 0.927 45 H 0.053 0.947 46 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 8.717 -16.978 -24.736 31.243 hybrid contribution 0.190 0.151 0.908 0.940 sum 8.907 -16.826 -23.828 30.500 Atomic orbital electron populations 1.21767 0.93483 1.03242 1.02368 1.22624 0.96089 0.83101 1.00771 1.87938 1.21832 1.27758 1.95572 1.22690 0.81448 0.95900 1.01736 1.22919 0.99966 0.92529 0.86703 1.88108 1.80866 1.21883 1.39801 1.21989 1.01349 0.83628 0.91365 0.85350 1.22240 0.97193 1.00523 1.02420 1.21214 0.75362 0.82139 0.91857 1.90716 1.51207 1.50339 1.53023 1.45712 1.71033 1.10377 1.08081 1.21682 0.94457 0.97730 0.82055 0.89791 1.22965 1.00743 0.94675 0.96659 1.22145 0.84264 0.99196 0.97003 1.44832 1.05220 1.34830 1.50366 1.18555 0.88452 1.22603 1.07387 0.92890 1.25670 1.01711 0.97374 0.98276 1.69971 1.40325 1.21063 1.28764 0.85905 0.81102 0.78218 0.77043 1.18050 1.23500 1.20219 1.21780 0.97096 0.88589 0.92709 0.93498 0.91886 0.89095 0.93634 0.91435 0.93534 0.88696 0.88955 0.90835 0.93908 0.88757 0.89182 0.74141 0.86869 0.88068 0.92697 0.95805 0.92680 0.94728 0.97521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 10.28 71.98 0.74 -1.50 16 2 C 0.05 0.80 6.66 71.98 0.48 1.28 16 3 O -0.41 -8.95 10.31 -144.34 -1.49 -10.44 16 4 C 0.06 0.94 6.32 71.98 0.45 1.40 16 5 C 0.05 0.83 6.13 71.98 0.44 1.27 16 6 O -0.39 -9.70 9.49 -125.55 -1.19 -10.89 16 7 C 0.08 1.51 3.14 29.85 0.09 1.60 16 8 H 0.13 1.34 7.79 -2.39 -0.02 1.33 16 9 C -0.17 -2.71 9.42 71.98 0.68 -2.03 16 10 C 0.51 14.34 7.23 87.66 0.63 14.98 16 11 O -0.57 -23.06 16.22 16.03 0.26 -22.80 16 12 N -0.70 -16.70 5.02 -436.92 -2.19 -18.90 16 13 C 0.15 4.66 3.24 46.18 0.15 4.81 16 14 H 0.08 2.92 7.69 -2.39 -0.02 2.90 16 15 C -0.11 -3.07 6.69 31.99 0.21 -2.86 16 16 C 0.10 4.02 4.70 86.86 0.41 4.42 16 17 N -0.63 -31.16 3.21 -691.99 -2.22 -33.37 16 18 C -0.24 -14.52 10.57 84.04 0.89 -13.63 16 19 H 0.05 3.49 8.06 -2.91 -0.02 3.47 16 20 C -0.04 -2.15 5.43 84.86 0.46 -1.69 16 21 N -0.95 -61.37 13.97 21.65 0.30 -61.07 16 22 Si 0.95 47.49 24.27 68.60 1.66 49.16 16 23 H -0.26 -11.48 6.49 99.48 0.65 -10.84 16 24 H -0.31 -15.47 7.11 99.48 0.71 -14.76 16 25 H -0.28 -13.71 6.66 99.48 0.66 -13.05 16 26 C 0.12 5.35 6.99 86.73 0.61 5.95 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 0.86 8.08 -2.39 -0.02 0.84 16 35 H 0.07 0.89 7.87 -2.39 -0.02 0.87 16 36 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 1.10 7.56 -2.39 -0.02 1.08 16 38 H 0.09 1.10 7.87 -2.38 -0.02 1.08 16 39 H 0.42 6.48 7.93 -92.71 -0.74 5.74 16 40 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.10 2.32 8.00 -2.38 -0.02 2.30 16 42 H 0.05 2.33 6.63 -2.39 -0.02 2.32 16 43 H 0.02 1.02 5.57 -2.39 -0.01 1.00 16 44 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 45 H 0.03 1.48 8.03 -2.38 -0.02 1.46 16 46 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -85.53 370.37 1.50 -84.04 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.11 Total: 10.27 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 6.25 Total: 14.00 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -4.11 Total: -113.34 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -2.42 Total: -44.13 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 1.66 Total: 49.16 kcal Total: -85.53 1.50 -84.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732153294.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.368 kcal (2) G-P(sol) polarization free energy of solvation -85.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds