Wall clock time and date at job start Tue Mar 31 2020 07:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46851 * 2 1 4 4 C 1.36854 * 120.00384 * 264.11427 * 3 2 1 5 5 H 1.07993 * 120.00371 * 137.90488 * 4 3 2 6 6 C 1.39027 * 119.99495 * 317.91061 * 4 3 2 7 7 N 1.31387 * 120.00245 * 345.41731 * 6 4 3 8 8 Si 1.86799 * 119.99456 * 165.41491 * 6 4 3 9 9 H 1.48499 * 109.47056 * 90.00049 * 8 6 4 10 10 H 1.48500 * 109.47073 * 209.99756 * 8 6 4 11 11 H 1.48496 * 109.47768 * 329.99910 * 8 6 4 12 12 C 1.34782 * 119.99965 * 84.12042 * 3 2 1 13 13 O 1.21755 * 119.99763 * 5.53955 * 12 3 2 14 14 C 1.46415 * 119.99855 * 185.26596 * 12 3 2 15 15 O 1.34963 * 125.98835 * 354.89064 * 14 12 3 16 16 C 1.33988 * 109.36631 * 179.82500 * 15 14 12 17 17 Br 1.89097 * 125.62726 * 180.17237 * 16 15 14 18 18 C 1.35356 * 108.74917 * 0.43593 * 16 15 14 19 19 C 1.36719 * 125.98543 * 175.19486 * 14 12 3 20 20 C 1.50707 * 126.63489 * 0.02562 * 19 14 12 21 21 H 1.08994 * 109.47331 * 300.00096 * 1 2 3 22 22 H 1.09008 * 109.47350 * 59.99974 * 1 2 3 23 23 H 1.08995 * 109.47221 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47062 * 240.00063 * 2 1 3 25 25 H 1.08997 * 109.46898 * 120.00229 * 2 1 3 26 26 H 0.96999 * 119.99940 * 180.02562 * 7 6 4 27 27 H 1.08002 * 126.43194 * 179.76748 * 18 16 15 28 28 H 1.08991 * 109.47178 * 90.00052 * 20 19 14 29 29 H 1.09003 * 109.47036 * 209.99522 * 20 19 14 30 30 H 1.08996 * 109.47036 * 329.99322 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3609 1.9860 -1.1789 5 1 2.0749 3.0109 -1.3632 6 6 3.0772 1.2807 -2.1393 7 7 3.6703 0.1527 -1.8197 8 14 3.1962 1.9368 -3.8842 9 1 4.3861 2.8175 -4.0018 10 1 3.3253 0.8012 -4.8324 11 1 1.9720 2.7133 -4.2058 12 6 2.1301 2.0565 1.1611 13 8 1.9225 1.4886 2.2179 14 6 2.5072 3.4712 1.1518 15 8 2.8627 4.1901 0.0663 16 6 3.1365 5.4483 0.4368 17 35 3.6760 6.8443 -0.7190 18 6 2.9690 5.5538 1.7758 19 6 2.5664 4.2940 2.2421 20 6 2.2590 3.9194 3.6692 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 4.1703 -0.3392 -2.4897 27 1 3.1170 6.4415 2.3728 28 1 3.1685 3.5683 4.1566 29 1 1.8762 4.7914 4.1993 30 1 1.5101 3.1276 3.6837 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068232321.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:17 Heat of formation + Delta-G solvation = -13.392825 kcal Electronic energy + Delta-G solvation = -17374.823514 eV Core-core repulsion = 14411.645411 eV Total energy + Delta-G solvation = -2963.178104 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 301.010 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.07200 -38.43122 -35.27343 -33.47504 -31.95941 -31.86325 -30.20796 -28.71257 -26.90440 -24.97972 -22.87575 -21.29651 -20.24349 -19.14883 -17.89238 -16.00836 -15.76899 -15.43385 -14.86117 -14.49013 -13.70226 -13.42432 -12.92833 -12.70409 -12.66221 -12.57881 -12.06947 -11.82622 -11.74825 -11.38204 -11.18767 -11.02945 -10.92587 -10.65430 -10.44903 -10.33768 -9.99768 -9.24571 -9.16517 -8.79586 -7.97563 -7.56752 -6.50401 -4.22714 1.21947 1.65224 2.67889 3.09880 3.16625 3.20556 3.78402 4.02108 4.19683 4.62857 4.94363 5.21310 5.63390 5.66706 5.95165 6.08467 6.16980 6.23849 6.28779 6.29724 6.40134 6.58526 6.73505 6.88223 6.95147 7.25003 7.40407 7.42796 7.79677 8.26597 8.91164 9.27306 9.69864 10.51556 Molecular weight = 301.01amu Principal moments of inertia in cm(-1) A = 0.014192 B = 0.008092 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.483720 B = 3459.224427 C = 5145.748186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.113 3.887 3 N -0.413 5.413 4 C -0.338 4.338 5 H 0.101 0.899 6 C 0.050 3.950 7 N -0.855 5.855 8 Si 0.916 3.084 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.265 1.265 12 C 0.532 3.468 13 O -0.581 6.581 14 C 0.013 3.987 15 O -0.110 6.110 16 C -0.042 4.042 17 Br 0.030 6.970 18 C -0.163 4.163 19 C -0.144 4.144 20 C -0.078 4.078 21 H 0.047 0.953 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.104 0.896 25 H 0.059 0.941 26 H 0.273 0.727 27 H 0.153 0.847 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.880 10.319 1.536 10.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.010 4.010 3 N -0.128 5.128 4 C -0.466 4.466 5 H 0.118 0.882 6 C -0.157 4.157 7 N -0.490 5.490 8 Si 0.741 3.259 9 H -0.197 1.197 10 H -0.205 1.205 11 H -0.189 1.189 12 C 0.320 3.680 13 O -0.468 6.468 14 C -0.042 4.042 15 O -0.004 6.004 16 C -0.172 4.172 17 Br 0.114 6.886 18 C -0.185 4.185 19 C -0.148 4.148 20 C -0.135 4.135 21 H 0.066 0.934 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.122 0.878 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.171 0.829 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.660 10.210 1.167 10.298 hybrid contribution 0.197 0.209 -0.761 0.813 sum -0.464 10.419 0.406 10.437 Atomic orbital electron populations 1.22097 0.97837 1.00492 1.01374 1.21411 0.91770 0.84045 1.03807 1.43453 1.52523 1.11951 1.04919 1.19677 1.34699 0.99146 0.93083 0.88183 1.25478 0.93627 0.95986 1.00652 1.69885 1.28739 1.15543 1.34860 0.86089 0.79462 0.78788 0.81516 1.19731 1.20493 1.18941 1.16969 0.83066 0.83043 0.84879 1.90693 1.58169 1.67130 1.30856 1.22601 1.04179 0.93657 0.83794 1.84729 1.64074 1.17177 1.34400 1.24072 1.12538 0.86871 0.93747 1.96715 1.89594 1.36979 1.65304 1.21342 1.06002 0.99122 0.92071 1.20415 1.05375 0.92126 0.96838 1.20218 1.02486 1.01389 0.89397 0.93432 0.92860 0.92980 0.87790 0.92248 0.91658 0.82921 0.91641 0.92512 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 10.19 37.16 0.38 -2.79 16 2 C 0.11 2.64 5.61 -4.04 -0.02 2.62 16 3 N -0.41 -10.54 2.50 -116.39 -0.29 -10.83 16 4 C -0.34 -8.73 8.00 -15.02 -0.12 -8.85 16 5 H 0.10 2.58 5.86 -52.49 -0.31 2.27 16 6 C 0.05 1.27 5.03 -17.45 -0.09 1.18 16 7 N -0.85 -22.39 11.46 55.50 0.64 -21.76 16 8 Si 0.92 19.64 29.58 -169.99 -5.03 14.61 16 9 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 10 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 11 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 12 C 0.53 13.43 7.55 -12.97 -0.10 13.33 16 13 O -0.58 -15.03 14.44 5.14 0.07 -14.96 16 14 C 0.01 0.31 6.82 -36.84 -0.25 0.06 16 15 O -0.11 -2.47 7.50 4.70 0.04 -2.43 16 16 C -0.04 -0.78 7.80 29.70 0.23 -0.55 16 17 Br 0.03 0.45 34.09 -68.01 -2.32 -1.86 16 18 C -0.16 -2.80 10.78 -39.86 -0.43 -3.23 16 19 C -0.14 -2.81 6.20 -104.42 -0.65 -3.45 16 20 C -0.08 -1.32 9.76 36.01 0.35 -0.97 16 21 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 22 H 0.05 1.05 8.14 -51.92 -0.42 0.62 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.10 2.55 5.70 -51.93 -0.30 2.26 16 25 H 0.06 1.42 7.53 -51.93 -0.39 1.03 16 26 H 0.27 6.70 8.31 -40.82 -0.34 6.37 16 27 H 0.15 2.07 8.06 -52.49 -0.42 1.65 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.58 6.56 -51.93 -0.34 1.24 16 LS Contribution 281.37 15.07 4.24 4.24 Total: -1.00 -27.97 281.37 -6.35 -34.32 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -3.01 Total: 1.32 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -0.69 Total: -2.66 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 0.35 Total: -32.58 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: 0.11 Total: -17.39 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.03 Total: 14.61 kcal Atomic # 35 Polarization: 0.45 SS G_CDS: -2.32 Total: -1.86 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -27.97 -6.35 -34.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068232321.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.929 kcal (2) G-P(sol) polarization free energy of solvation -27.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds