Wall clock time and date at job start Tue Mar 31 2020 08:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00034 * 2 1 4 4 H 1.48497 * 109.47282 * 264.79219 * 3 2 1 5 5 H 1.48495 * 109.47400 * 24.79851 * 3 2 1 6 6 H 1.48508 * 109.46627 * 144.79685 * 3 2 1 7 7 C 1.38815 * 119.99500 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00271 * 340.87535 * 7 2 1 9 9 N 1.36939 * 119.99807 * 160.87561 * 7 2 1 10 10 C 1.47424 * 125.65056 * 152.51354 * 9 7 2 11 11 C 1.54905 * 104.83415 * 155.83849 * 10 9 7 12 12 C 1.55155 * 101.58341 * 37.01141 * 11 10 9 13 13 H 1.08996 * 110.71824 * 83.03692 * 12 11 10 14 14 O 1.42894 * 110.72449 * 206.13552 * 12 11 10 15 15 C 1.35922 * 117.00247 * 205.36545 * 14 12 11 16 16 C 1.38749 * 120.03463 * 355.38177 * 15 14 12 17 17 C 1.38135 * 119.97924 * 180.25227 * 16 15 14 18 18 C 1.38360 * 120.05421 * 359.44400 * 17 16 15 19 19 Cl 1.73606 * 119.96282 * 180.27720 * 18 17 16 20 20 C 1.38456 * 120.07408 * 0.56065 * 18 17 16 21 21 Cl 1.73604 * 119.99049 * 179.74134 * 20 18 17 22 22 C 1.38268 * 120.01918 * 359.71574 * 20 18 17 23 23 C 1.47319 * 125.61668 * 332.66329 * 9 7 2 24 24 H 0.96998 * 120.00037 * 0.02562 * 1 2 3 25 25 H 1.08998 * 110.36281 * 37.00106 * 10 9 7 26 26 H 1.09001 * 110.46354 * 274.73072 * 10 9 7 27 27 H 1.09003 * 111.00291 * 278.94090 * 11 10 9 28 28 H 1.08996 * 111.00605 * 155.08701 * 11 10 9 29 29 H 1.08000 * 120.00855 * 359.97438 * 16 15 14 30 30 H 1.07998 * 119.96795 * 179.72477 * 17 16 15 31 31 H 1.07998 * 120.03255 * 180.02562 * 22 20 18 32 32 H 1.09003 * 110.06842 * 61.74584 * 23 9 7 33 33 H 1.09008 * 109.84531 * 300.49003 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6078 1.9829 -1.3943 5 1 1.3971 2.6819 0.5872 6 1 3.4885 1.4742 0.8072 7 6 2.0102 -1.2022 -0.0005 8 1 1.5149 -2.1118 0.3055 9 7 3.3229 -1.2349 -0.3891 10 6 4.3288 -2.2131 0.0631 11 6 5.3949 -2.2339 -1.0604 12 6 5.4334 -0.7409 -1.4810 13 1 6.0815 -0.1697 -0.8165 14 8 5.8612 -0.6088 -2.8380 15 6 6.4440 0.5678 -3.1895 16 6 6.5143 1.6086 -2.2747 17 6 7.1022 2.8056 -2.6348 18 6 7.6312 2.9637 -3.9035 19 17 8.3759 4.4667 -4.3512 20 6 7.5621 1.9267 -4.8182 21 17 8.2206 2.1298 -6.4116 22 6 6.9693 0.7292 -4.4629 23 6 3.9639 -0.2959 -1.3260 24 1 -0.4850 0.8400 -0.0004 25 1 3.8762 -3.1984 0.1749 26 1 4.7756 -1.8929 1.0043 27 1 5.0762 -2.8653 -1.8898 28 1 6.3623 -2.5563 -0.6752 29 1 6.1056 1.4843 -1.2827 30 1 7.1529 3.6171 -1.9240 31 1 6.9157 -0.0800 -5.1761 32 1 3.9236 0.7174 -0.9261 33 1 3.4605 -0.3356 -2.2921 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126340747.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:59 Heat of formation + Delta-G solvation = 8.972779 kcal Electronic energy + Delta-G solvation = -19748.949301 eV Core-core repulsion = 16441.877894 eV Total energy + Delta-G solvation = -3307.071408 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 301.038 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.53204 -38.53766 -36.97197 -36.71987 -36.02366 -32.56199 -31.32897 -30.23933 -29.42502 -28.19199 -24.56757 -23.43045 -22.77701 -20.78978 -20.44632 -18.63771 -17.23647 -16.68991 -16.52101 -16.24103 -15.27354 -14.88616 -14.48912 -14.11592 -14.00538 -13.67965 -13.19483 -12.85167 -12.70336 -12.62193 -12.25161 -12.08286 -11.74083 -11.56175 -11.29434 -11.23181 -11.17157 -11.05175 -10.72005 -10.64685 -10.34574 -9.97014 -9.54180 -9.20717 -8.70620 -8.32419 -7.10817 -6.05952 -3.44285 0.75056 0.91828 1.61165 1.97118 3.11958 3.23462 3.24542 3.33884 3.40285 4.38077 4.43017 4.60983 4.73470 4.83539 4.86104 4.98719 5.11351 5.14913 5.31056 5.42154 5.49542 5.68554 5.80110 5.82473 5.93859 6.01504 6.10914 6.21507 6.41435 6.45910 6.61816 7.28692 7.65429 8.22321 8.71369 9.56260 10.04990 11.10418 Molecular weight = 301.04amu Principal moments of inertia in cm(-1) A = 0.020290 B = 0.004199 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.680537 B = 6666.488958 C = 7411.166918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.029 3.971 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.300 1.300 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.093 0.907 9 N -0.605 5.605 10 C 0.131 3.869 11 C -0.123 4.123 12 C 0.065 3.935 13 H 0.084 0.916 14 O -0.292 6.292 15 C 0.161 3.839 16 C -0.195 4.195 17 C -0.054 4.054 18 C -0.076 4.076 19 Cl -0.057 7.057 20 C 0.009 3.991 21 Cl -0.046 7.046 22 C -0.139 4.139 23 C 0.101 3.899 24 H 0.265 0.735 25 H 0.059 0.941 26 H 0.030 0.970 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.151 0.849 32 H 0.031 0.969 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.577 3.850 -7.782 20.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.171 4.171 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.228 1.228 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.110 0.890 9 N -0.334 5.334 10 C 0.006 3.994 11 C -0.161 4.161 12 C 0.009 3.991 13 H 0.102 0.898 14 O -0.204 6.204 15 C 0.114 3.886 16 C -0.214 4.214 17 C -0.073 4.073 18 C -0.103 4.103 19 Cl -0.028 7.028 20 C -0.018 4.018 21 Cl -0.017 7.017 22 C -0.159 4.159 23 C -0.024 4.024 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.164 0.836 30 H 0.163 0.837 31 H 0.169 0.831 32 H 0.048 0.952 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 18.396 3.906 -8.043 20.454 hybrid contribution 0.443 1.398 0.036 1.467 sum 18.839 5.304 -8.007 21.146 Atomic orbital electron populations 1.69793 1.05584 1.26811 1.52479 1.25193 0.95221 0.97531 0.99121 0.86882 0.79144 0.84606 0.77710 1.21053 1.22757 1.20346 1.18638 0.82601 0.94874 1.41438 0.88984 1.44642 1.07097 1.33063 1.48565 1.21687 0.88983 0.94946 0.93768 1.22900 1.00023 0.93138 1.00045 1.23748 0.96439 0.99458 0.79475 0.89819 1.86172 1.71859 1.31617 1.30799 1.18897 0.90988 0.85963 0.92797 1.21500 1.05016 0.93433 1.01447 1.20815 0.94963 0.97655 0.93895 1.20544 1.05886 0.88676 0.95223 1.98368 1.80843 1.30803 1.92784 1.20337 1.00152 0.94007 0.87341 1.98387 1.83988 1.97335 1.21983 1.20150 1.02513 0.97356 0.95844 1.22163 0.90411 0.94147 0.95643 0.92469 0.92313 0.95243 0.89723 0.90513 0.83637 0.83713 0.83121 0.95216 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.97 55.49 0.78 -26.72 16 2 C 0.03 0.84 5.45 -17.43 -0.09 0.75 16 3 Si 0.89 22.17 24.47 -169.99 -4.16 18.01 16 4 H -0.28 -6.92 6.85 56.52 0.39 -6.53 16 5 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.28 -6.67 6.99 56.52 0.40 -6.28 16 7 C -0.25 -6.90 10.55 -15.06 -0.16 -7.06 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 N -0.61 -14.15 3.10 -169.83 -0.53 -14.68 16 10 C 0.13 2.39 7.23 -2.53 -0.02 2.37 16 11 C -0.12 -1.82 6.81 -24.59 -0.17 -1.99 16 12 C 0.07 1.05 2.75 -24.90 -0.07 0.98 16 13 H 0.08 1.20 6.11 -51.93 -0.32 0.88 16 14 O -0.29 -4.54 9.86 -19.49 -0.19 -4.73 16 15 C 0.16 2.27 6.68 -39.23 -0.26 2.01 16 16 C -0.20 -2.61 8.95 -39.43 -0.35 -2.97 16 17 C -0.05 -0.65 9.82 -39.57 -0.39 -1.04 16 18 C -0.08 -0.92 6.32 -39.46 -0.25 -1.17 16 19 Cl -0.06 -0.63 27.95 -51.86 -1.45 -2.08 16 20 C 0.01 0.11 6.32 -39.49 -0.25 -0.14 16 21 Cl -0.05 -0.51 27.95 -51.86 -1.45 -1.96 16 22 C -0.14 -1.75 9.77 -39.40 -0.38 -2.14 16 23 C 0.10 2.14 5.29 -2.90 -0.02 2.12 16 24 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.15 1.95 5.74 -52.49 -0.30 1.65 16 30 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 31 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.03 0.67 3.21 -51.93 -0.17 0.51 16 33 H 0.05 1.23 8.06 -51.92 -0.42 0.81 16 LS Contribution 302.38 15.07 4.56 4.56 Total: -1.00 -29.97 302.38 -8.18 -38.14 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -3.32 Total: -2.29 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -2.41 Total: -8.26 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.25 Total: -41.40 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.19 Total: -4.73 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.16 Total: 18.01 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -2.90 Total: -4.04 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.97 -8.18 -38.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126340747.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.116 kcal (2) G-P(sol) polarization free energy of solvation -29.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds