Wall clock time and date at job start Tue Mar 31 2020 07:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38287 * 119.98749 * 2 1 4 4 C 1.38344 * 120.16961 * 179.97438 * 3 2 1 5 5 Cl 1.73592 * 119.93101 * 179.97438 * 4 3 2 6 6 C 1.38332 * 120.13382 * 0.02562 * 4 3 2 7 7 C 1.38679 * 119.97522 * 359.97438 * 6 4 3 8 8 N 1.40122 * 120.08585 * 180.02562 * 7 6 4 9 9 C 1.34778 * 119.99895 * 325.36075 * 8 7 6 10 10 O 1.21303 * 119.99771 * 4.45431 * 9 8 7 11 11 C 1.50694 * 120.00339 * 184.45647 * 9 8 7 12 12 S 1.80996 * 109.47661 * 179.97438 * 11 9 8 13 13 C 1.76194 * 100.00377 * 179.97438 * 12 11 9 14 14 H 1.08003 * 120.00054 * 359.97438 * 13 12 11 15 15 C 1.38801 * 120.00336 * 180.02562 * 13 12 11 16 16 N 1.31633 * 119.99550 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00236 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46846 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47131 * 119.99712 * 17 15 13 20 20 H 1.48504 * 109.46726 * 239.99764 * 17 15 13 21 21 C 1.38505 * 119.98795 * 179.97438 * 2 1 3 22 22 O 1.35994 * 120.06804 * 0.02792 * 21 2 1 23 23 H 1.09004 * 109.46940 * 90.00087 * 1 2 3 24 24 H 1.08993 * 109.47056 * 209.99686 * 1 2 3 25 25 H 1.09000 * 109.46788 * 330.00329 * 1 2 3 26 26 H 1.08007 * 119.91533 * 359.72314 * 3 2 1 27 27 H 1.07997 * 120.01284 * 180.02562 * 6 4 3 28 28 H 0.96996 * 120.00019 * 145.36178 * 8 7 6 29 29 H 1.09005 * 109.46799 * 299.99953 * 11 9 8 30 30 H 1.08997 * 109.46956 * 59.99489 * 11 9 8 31 31 H 0.97004 * 119.99802 * 180.02562 * 16 15 13 32 32 H 0.96693 * 113.99916 * 89.99684 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1977 0.0000 4 6 3.5816 1.2021 0.0005 5 17 4.4430 2.7093 -0.0001 6 6 4.2799 0.0080 0.0005 7 6 3.5926 -1.1965 0.0005 8 7 4.2976 -2.4075 0.0011 9 6 5.4668 -2.5069 -0.6619 10 8 5.9491 -1.5277 -1.1910 11 6 6.1749 -3.8344 -0.7459 12 16 7.7045 -3.6435 -1.6946 13 6 8.3098 -5.2971 -1.6353 14 1 7.7496 -6.0589 -1.1135 15 6 9.5072 -5.6207 -2.2584 16 7 10.1902 -4.6921 -2.8940 17 14 10.1485 -7.3740 -2.1962 18 1 9.2017 -8.2204 -1.4266 19 1 10.2762 -7.9037 -3.5776 20 1 11.4779 -7.3916 -1.5345 21 6 2.1993 -1.1996 0.0005 22 8 1.5205 -2.3780 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6566 2.1322 -0.0045 27 1 5.3599 0.0137 0.0014 28 1 3.9441 -3.1742 0.4786 29 1 6.4115 -4.1842 0.2590 30 1 5.5292 -4.5599 -1.2406 31 1 11.0268 -4.9183 -3.3297 32 1 1.3245 -2.7190 -0.8829 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179802244.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:50 Heat of formation + Delta-G solvation = -88.845035 kcal Electronic energy + Delta-G solvation = -18962.899206 eV Core-core repulsion = 15653.629806 eV Total energy + Delta-G solvation = -3309.269400 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 301.033 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.88652 -40.17037 -38.15570 -37.01969 -36.06180 -34.59706 -33.19753 -31.40297 -29.48392 -27.89856 -27.66972 -23.89019 -23.28209 -21.42417 -20.03430 -19.41178 -18.57293 -18.03525 -17.27862 -16.89286 -16.78862 -16.30551 -16.20383 -15.79464 -15.07249 -14.63826 -14.54677 -14.35164 -13.98008 -13.65091 -13.59711 -13.42524 -13.17150 -12.92846 -12.76478 -12.62827 -12.53773 -12.01622 -11.90213 -11.72389 -11.27955 -11.16810 -10.90525 -10.30824 -9.59486 -9.24096 -8.68887 -8.36342 -6.14617 -0.10411 0.07180 1.04148 1.21167 1.40758 1.41888 1.45239 1.56462 2.04669 2.25130 2.37453 2.98511 3.12526 3.25304 3.65948 3.77767 4.02670 4.15992 4.20333 4.24181 4.44707 4.53084 4.69810 4.85937 4.88878 5.06521 5.15384 5.26891 5.38820 5.41561 5.66330 6.18767 6.23633 6.68646 6.99398 7.05605 8.72978 Molecular weight = 301.03amu Principal moments of inertia in cm(-1) A = 0.023725 B = 0.003268 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.915313 B = 8566.396056 C = 9614.851591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.077 4.077 3 C -0.109 4.109 4 C -0.030 4.030 5 Cl -0.068 7.068 6 C -0.132 4.132 7 C 0.127 3.873 8 N -0.651 5.651 9 C 0.535 3.465 10 O -0.537 6.537 11 C -0.128 4.128 12 S -0.145 6.145 13 C -0.546 4.546 14 H 0.085 0.915 15 C 0.014 3.986 16 N -0.911 5.911 17 Si 0.999 3.001 18 H -0.256 1.256 19 H -0.274 1.274 20 H -0.275 1.275 21 C 0.089 3.911 22 O -0.487 6.487 23 H 0.088 0.912 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.163 0.837 27 H 0.125 0.875 28 H 0.431 0.569 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.271 0.729 32 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.548 7.249 7.637 24.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.079 4.079 3 C -0.128 4.128 4 C -0.058 4.058 5 Cl -0.039 7.039 6 C -0.153 4.153 7 C 0.032 3.968 8 N -0.299 5.299 9 C 0.323 3.677 10 O -0.412 6.412 11 C -0.279 4.279 12 S 0.082 5.918 13 C -0.694 4.694 14 H 0.103 0.897 15 C -0.191 4.191 16 N -0.548 5.548 17 Si 0.821 3.179 18 H -0.179 1.179 19 H -0.200 1.200 20 H -0.201 1.201 21 C 0.042 3.958 22 O -0.299 6.299 23 H 0.106 0.894 24 H 0.098 0.902 25 H 0.105 0.895 26 H 0.180 0.820 27 H 0.143 0.857 28 H 0.270 0.730 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.080 0.920 32 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -21.471 9.018 7.252 24.391 hybrid contribution 0.548 -2.127 0.100 2.199 sum -20.923 6.891 7.352 23.223 Atomic orbital electron populations 1.20768 0.87042 1.04512 1.03913 1.20264 0.98564 0.90329 0.98729 1.21099 0.90666 0.99747 1.01335 1.20805 0.93060 0.86589 1.05322 1.98368 1.77564 1.31073 1.96911 1.21021 1.01133 0.90468 1.02683 1.18078 0.90846 0.85773 1.02140 1.43208 1.21462 1.13117 1.52133 1.20357 0.80426 0.90142 0.76812 1.90723 1.65183 1.39339 1.45998 1.23348 1.01113 0.97163 1.06270 1.85614 1.20775 1.16098 1.69325 1.23240 1.10661 0.94836 1.40636 0.89698 1.26123 0.95819 1.03387 0.93791 1.70186 1.15432 1.35548 1.33590 0.84902 0.78183 0.76492 0.78353 1.17918 1.19963 1.20076 1.17986 0.86730 0.87036 1.04088 1.84752 1.75225 1.34657 1.35312 0.89382 0.90174 0.89532 0.81971 0.85671 0.72965 0.86677 0.86402 0.91987 0.73209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.79 71.24 0.70 -0.32 16 2 C -0.08 -1.30 5.89 -19.79 -0.12 -1.42 16 3 C -0.11 -2.03 9.47 22.31 0.21 -1.82 16 4 C -0.03 -0.76 6.32 22.32 0.14 -0.62 16 5 Cl -0.07 -1.68 28.95 -2.72 -0.08 -1.76 16 6 C -0.13 -3.97 8.48 22.40 0.19 -3.78 16 7 C 0.13 3.35 6.32 38.18 0.24 3.59 16 8 N -0.65 -17.04 5.19 -303.14 -1.57 -18.62 16 9 C 0.53 19.12 7.69 87.65 0.67 19.79 16 10 O -0.54 -23.92 13.28 -3.10 -0.04 -23.96 16 11 C -0.13 -4.82 6.16 71.23 0.44 -4.38 16 12 S -0.15 -7.85 20.57 -56.49 -1.16 -9.01 16 13 C -0.55 -30.48 9.50 67.95 0.65 -29.84 16 14 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 15 C 0.01 0.76 5.49 84.86 0.47 1.23 16 16 N -0.91 -55.35 13.22 21.65 0.29 -55.07 16 17 Si 1.00 42.97 29.55 68.60 2.03 44.99 16 18 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 21 C 0.09 1.77 6.69 22.60 0.15 1.92 16 22 O -0.49 -7.14 12.10 -93.49 -1.13 -8.27 16 23 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 24 H 0.08 0.77 7.52 -2.39 -0.02 0.75 16 25 H 0.09 0.60 8.09 -2.39 -0.02 0.58 16 26 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 27 H 0.13 4.58 6.20 -2.91 -0.02 4.56 16 28 H 0.43 8.39 8.57 -92.71 -0.79 7.59 16 29 H 0.12 3.88 8.14 -2.39 -0.02 3.86 16 30 H 0.12 3.90 8.14 -2.40 -0.02 3.88 16 31 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 32 H 0.41 2.99 9.06 -74.06 -0.67 2.32 16 Total: -1.00 -75.14 314.04 1.79 -73.35 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -0.28 Total: 13.99 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 3.74 Total: -15.64 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -1.29 Total: -73.69 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -1.17 Total: -32.23 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: -7.85 SS G_CDS: -1.16 Total: -9.01 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.08 Total: -1.76 kcal Total: -75.14 1.79 -73.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179802244.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.500 kcal (2) G-P(sol) polarization free energy of solvation -75.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds