Wall clock time and date at job start Tue Mar 31 2020 08:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 119.99691 * 2 1 4 4 H 1.48494 * 109.46915 * 84.29086 * 3 2 1 5 5 H 1.48504 * 109.46922 * 204.28694 * 3 2 1 6 6 H 1.48498 * 109.47137 * 324.28703 * 3 2 1 7 7 C 1.38809 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00584 * 21.13110 * 7 2 1 9 9 N 1.36936 * 119.99604 * 201.13810 * 7 2 1 10 10 C 1.46496 * 120.00420 * 41.11698 * 9 7 2 11 11 C 1.50698 * 109.47095 * 89.99769 * 10 9 7 12 12 C 1.38192 * 120.02003 * 259.72471 * 11 10 9 13 13 C 1.38338 * 120.06724 * 179.76970 * 12 11 10 14 14 Cl 1.73600 * 119.95501 * 180.23620 * 13 12 11 15 15 C 1.38390 * 120.08966 * 0.50890 * 13 12 11 16 16 C 1.38210 * 120.03312 * 359.74513 * 15 13 12 17 17 Cl 1.73595 * 120.03367 * 180.02562 * 16 15 13 18 18 C 1.38655 * 120.01621 * 80.00416 * 11 10 9 19 19 O 1.35958 * 120.04474 * 359.97438 * 18 11 10 20 20 C 1.46504 * 120.00087 * 221.11623 * 9 7 2 21 21 C 1.53006 * 117.49639 * 14.35267 * 20 9 7 22 22 C 1.53001 * 117.49974 * 305.69587 * 20 9 7 23 23 H 0.96996 * 120.00487 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47365 * 210.00219 * 10 9 7 25 25 H 1.08998 * 109.47079 * 329.99949 * 10 9 7 26 26 H 1.08004 * 119.96675 * 0.02732 * 12 11 10 27 27 H 1.08002 * 119.98330 * 179.72465 * 15 13 12 28 28 H 0.96696 * 113.99734 * 90.00290 * 19 18 11 29 29 H 1.09001 * 115.55179 * 160.02171 * 20 9 7 30 30 H 1.09008 * 117.49749 * 0.02562 * 21 20 9 31 31 H 1.08993 * 117.49752 * 145.01980 * 21 20 9 32 32 H 1.08990 * 117.49906 * 214.97786 * 22 20 9 33 33 H 1.09005 * 117.49649 * 359.96985 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.3770 2.1161 1.3931 5 1 3.6029 1.4085 -0.5759 6 1 1.5131 2.6149 -0.8172 7 6 2.0102 -1.2021 -0.0005 8 1 1.5248 -2.1058 -0.3381 9 7 3.3105 -1.2421 0.4271 10 6 3.7176 -0.4746 1.6067 11 6 3.5502 -1.3235 2.8406 12 6 2.4427 -1.1559 3.6500 13 6 2.2856 -1.9378 4.7803 14 17 0.8902 -1.7291 5.7916 15 6 3.2422 -2.8823 5.1090 16 6 4.3540 -3.0496 4.3052 17 17 5.5536 -4.2348 4.7171 18 6 4.5102 -2.2690 3.1675 19 8 5.6030 -2.4317 2.3752 20 6 4.2945 -2.0524 -0.2950 21 6 3.9100 -2.5553 -1.6879 22 6 3.9698 -3.5319 -0.5107 23 1 -0.4851 0.8400 0.0004 24 1 4.7626 -0.1813 1.5065 25 1 3.0966 0.4171 1.6921 26 1 1.6969 -0.4166 3.3975 27 1 3.1201 -3.4888 5.9943 28 1 6.3535 -1.8736 2.6209 29 1 5.3379 -1.7855 -0.1265 30 1 2.9250 -2.2830 -2.0672 31 1 4.7004 -2.6197 -2.4356 32 1 4.7994 -4.2382 -0.4845 33 1 3.0242 -3.9025 -0.1148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271145610.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:00 Heat of formation + Delta-G solvation = 22.374852 kcal Electronic energy + Delta-G solvation = -20471.970258 eV Core-core repulsion = 17165.480008 eV Total energy + Delta-G solvation = -3306.490250 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 301.038 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.83070 -37.20550 -36.92958 -36.39303 -35.77174 -33.77719 -31.93834 -30.22627 -29.23997 -25.94047 -23.92819 -22.48922 -21.50221 -21.36840 -19.76221 -18.25979 -17.05785 -16.34900 -15.98318 -15.43445 -15.27912 -14.93012 -14.30846 -13.83327 -13.40374 -13.23673 -12.71160 -12.45540 -12.38107 -12.27116 -12.08248 -11.91943 -11.14618 -10.98994 -10.87090 -10.71288 -10.67270 -10.59103 -10.45188 -10.06130 -10.02637 -9.61934 -9.35164 -8.59879 -8.55703 -8.25800 -6.76688 -6.13379 -3.58279 1.16512 1.29428 1.99172 2.47509 3.17627 3.37249 3.42418 3.57298 4.25488 4.38237 4.86558 4.87673 4.95587 5.20210 5.28288 5.40965 5.48148 5.83614 5.85446 5.93422 6.02577 6.06537 6.11959 6.30927 6.39145 6.50156 6.57854 6.63886 6.79464 6.96910 7.17163 7.76220 7.92660 8.32288 8.85404 9.55537 9.96693 11.00643 Molecular weight = 301.04amu Principal moments of inertia in cm(-1) A = 0.012757 B = 0.007316 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.410665 B = 3826.305636 C = 5287.360634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.044 3.956 3 Si 0.870 3.130 4 H -0.283 1.283 5 H -0.264 1.264 6 H -0.297 1.297 7 C -0.270 4.270 8 H 0.079 0.921 9 N -0.558 5.558 10 C 0.179 3.821 11 C -0.080 4.080 12 C -0.071 4.071 13 C -0.031 4.031 14 Cl -0.069 7.069 15 C -0.108 4.108 16 C -0.056 4.056 17 Cl -0.064 7.064 18 C 0.131 3.869 19 O -0.472 6.472 20 C 0.136 3.864 21 C -0.198 4.198 22 C -0.210 4.210 23 H 0.266 0.734 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.142 0.858 27 H 0.138 0.862 28 H 0.382 0.618 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.001 -2.725 9.442 14.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.158 4.158 3 Si 0.699 3.301 4 H -0.211 1.211 5 H -0.188 1.188 6 H -0.225 1.225 7 C -0.398 4.398 8 H 0.097 0.903 9 N -0.275 5.275 10 C 0.053 3.947 11 C -0.085 4.085 12 C -0.091 4.091 13 C -0.058 4.058 14 Cl -0.040 7.040 15 C -0.128 4.128 16 C -0.083 4.083 17 Cl -0.035 7.035 18 C 0.084 3.916 19 O -0.281 6.281 20 C 0.028 3.972 21 C -0.237 4.237 22 C -0.250 4.250 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.160 0.840 27 H 0.156 0.844 28 H 0.238 0.762 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.447 -3.083 9.213 13.551 hybrid contribution 0.433 0.929 0.389 1.097 sum 9.880 -2.154 9.602 13.944 Atomic orbital electron populations 1.69862 1.06031 1.27019 1.49841 1.25524 0.95024 0.97757 0.97541 0.87012 0.81203 0.84632 0.77298 1.21120 1.18827 1.22469 1.18658 0.85668 0.94339 1.41146 0.90305 1.43611 1.06825 1.53436 1.23598 1.20193 0.98787 0.92736 0.82992 1.21273 0.93264 0.97518 0.96429 1.21064 0.97477 0.98969 0.91586 1.20702 0.90512 0.99615 0.95000 1.98357 1.40868 1.96712 1.68048 1.20583 0.92511 0.99080 1.00631 1.21106 0.93716 0.96645 0.96853 1.98345 1.55691 1.56252 1.93208 1.17976 0.90152 0.94776 0.88711 1.84958 1.22633 1.66176 1.54333 1.20997 0.91909 0.90653 0.93622 1.23187 1.03096 1.05582 0.91787 1.23206 1.02118 0.95309 1.04384 0.92416 0.92481 0.91505 0.83980 0.84389 0.76230 0.88754 0.88001 0.90654 0.90779 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.58 13.97 55.49 0.78 -24.81 16 2 C 0.04 1.17 5.30 -17.43 -0.09 1.08 16 3 Si 0.87 20.53 25.13 -169.99 -4.27 16.26 16 4 H -0.28 -6.38 6.72 56.52 0.38 -6.00 16 5 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.27 -7.06 8.37 -15.06 -0.13 -7.19 16 8 H 0.08 2.31 7.52 -52.49 -0.39 1.92 16 9 N -0.56 -12.40 2.35 -167.03 -0.39 -12.79 16 10 C 0.18 3.51 4.34 -5.20 -0.02 3.49 16 11 C -0.08 -1.44 5.47 -104.49 -0.57 -2.02 16 12 C -0.07 -1.28 9.45 -39.56 -0.37 -1.66 16 13 C -0.03 -0.50 6.32 -39.49 -0.25 -0.75 16 14 Cl -0.07 -1.02 28.95 -51.86 -1.50 -2.52 16 15 C -0.11 -1.58 9.61 -39.54 -0.38 -1.96 16 16 C -0.06 -0.83 6.33 -39.37 -0.25 -1.08 16 17 Cl -0.06 -0.84 28.50 -51.86 -1.48 -2.31 16 18 C 0.13 2.07 6.67 -39.20 -0.26 1.81 16 19 O -0.47 -6.63 10.83 -19.61 -0.21 -6.84 16 20 C 0.14 2.69 5.61 -67.92 -0.38 2.31 16 21 C -0.20 -3.82 9.83 -26.69 -0.26 -4.08 16 22 C -0.21 -4.04 10.10 -26.69 -0.27 -4.31 16 23 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.06 0.97 7.75 -51.93 -0.40 0.56 16 25 H 0.07 1.42 3.53 -51.93 -0.18 1.24 16 26 H 0.14 2.74 8.03 -52.48 -0.42 2.32 16 27 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.38 3.54 9.06 45.56 0.41 3.95 16 29 H 0.09 1.67 7.76 -51.93 -0.40 1.27 16 30 H 0.10 2.22 7.03 -51.92 -0.37 1.85 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.83 7.97 -51.93 -0.41 1.41 16 LS Contribution 309.36 15.07 4.66 4.66 Total: -1.00 -28.55 309.36 -8.25 -36.80 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -2.60 Total: 5.91 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -3.24 Total: -14.36 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.38 Total: -37.60 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.21 Total: -6.84 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.27 Total: 16.26 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -2.98 Total: -4.83 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.55 -8.25 -36.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271145610.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.178 kcal (2) G-P(sol) polarization free energy of solvation -28.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds