Wall clock time and date at job start Tue Mar 31 2020 08:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 119.99691 * 2 1 4 4 H 1.48494 * 109.46915 * 84.29086 * 3 2 1 5 5 H 1.48504 * 109.46922 * 204.28694 * 3 2 1 6 6 H 1.48498 * 109.47137 * 324.28703 * 3 2 1 7 7 C 1.38809 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00584 * 21.13110 * 7 2 1 9 9 N 1.36936 * 119.99604 * 201.13810 * 7 2 1 10 10 C 1.46496 * 120.00420 * 41.11698 * 9 7 2 11 11 C 1.50698 * 109.47095 * 89.99769 * 10 9 7 12 12 C 1.38192 * 120.02003 * 259.72471 * 11 10 9 13 13 C 1.38338 * 120.06724 * 179.76970 * 12 11 10 14 14 Cl 1.73600 * 119.95501 * 180.23620 * 13 12 11 15 15 C 1.38390 * 120.08966 * 0.50890 * 13 12 11 16 16 C 1.38210 * 120.03312 * 359.74513 * 15 13 12 17 17 Cl 1.73595 * 120.03367 * 180.02562 * 16 15 13 18 18 C 1.38655 * 120.01621 * 80.00416 * 11 10 9 19 19 O 1.35958 * 120.04474 * 359.97438 * 18 11 10 20 20 C 1.46504 * 120.00087 * 221.11623 * 9 7 2 21 21 C 1.53006 * 117.49639 * 14.35267 * 20 9 7 22 22 C 1.53001 * 117.49974 * 305.69587 * 20 9 7 23 23 H 0.96996 * 120.00487 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47365 * 210.00219 * 10 9 7 25 25 H 1.08998 * 109.47079 * 329.99949 * 10 9 7 26 26 H 1.08004 * 119.96675 * 0.02732 * 12 11 10 27 27 H 1.08002 * 119.98330 * 179.72465 * 15 13 12 28 28 H 0.96696 * 113.99734 * 90.00290 * 19 18 11 29 29 H 1.09001 * 115.55179 * 160.02171 * 20 9 7 30 30 H 1.09008 * 117.49749 * 0.02562 * 21 20 9 31 31 H 1.08993 * 117.49752 * 145.01980 * 21 20 9 32 32 H 1.08990 * 117.49906 * 214.97786 * 22 20 9 33 33 H 1.09005 * 117.49649 * 359.96985 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.3770 2.1161 1.3931 5 1 3.6029 1.4085 -0.5759 6 1 1.5131 2.6149 -0.8172 7 6 2.0102 -1.2021 -0.0005 8 1 1.5248 -2.1058 -0.3381 9 7 3.3105 -1.2421 0.4271 10 6 3.7176 -0.4746 1.6067 11 6 3.5502 -1.3235 2.8406 12 6 2.4427 -1.1559 3.6500 13 6 2.2856 -1.9378 4.7803 14 17 0.8902 -1.7291 5.7916 15 6 3.2422 -2.8823 5.1090 16 6 4.3540 -3.0496 4.3052 17 17 5.5536 -4.2348 4.7171 18 6 4.5102 -2.2690 3.1675 19 8 5.6030 -2.4317 2.3752 20 6 4.2945 -2.0524 -0.2950 21 6 3.9100 -2.5553 -1.6879 22 6 3.9698 -3.5319 -0.5107 23 1 -0.4851 0.8400 0.0004 24 1 4.7626 -0.1813 1.5065 25 1 3.0966 0.4171 1.6921 26 1 1.6969 -0.4166 3.3975 27 1 3.1201 -3.4888 5.9943 28 1 6.3535 -1.8736 2.6209 29 1 5.3379 -1.7855 -0.1265 30 1 2.9250 -2.2830 -2.0672 31 1 4.7004 -2.6197 -2.4356 32 1 4.7994 -4.2382 -0.4845 33 1 3.0242 -3.9025 -0.1148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271145610.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:59 Heat of formation + Delta-G solvation = 5.295096 kcal Electronic energy + Delta-G solvation = -20472.710892 eV Core-core repulsion = 17165.480008 eV Total energy + Delta-G solvation = -3307.230884 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 301.038 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.09541 -38.77629 -38.13141 -37.52716 -36.98248 -35.40656 -33.75713 -31.74080 -30.52598 -27.57467 -25.66998 -23.76141 -22.93101 -22.83142 -21.50079 -19.44474 -18.69529 -17.75033 -17.40519 -16.94196 -16.91375 -16.39340 -15.54536 -15.39882 -14.83592 -14.65554 -14.37063 -14.14314 -13.87572 -13.55163 -13.45647 -13.21645 -12.70108 -12.66526 -12.22523 -12.19074 -12.07316 -11.95410 -11.83523 -11.76732 -11.60820 -11.25928 -10.88718 -10.58928 -9.85349 -9.47874 -8.56077 -8.19493 -5.62855 -0.07632 0.02768 0.80333 1.27322 1.30545 1.44325 1.55051 2.29053 2.41629 3.05625 3.11981 3.30220 3.43490 3.70735 3.96024 4.09414 4.15408 4.36545 4.46974 4.49385 4.59481 4.62225 4.70428 4.87524 4.98668 5.06115 5.10529 5.32045 5.36777 5.47499 5.57997 5.94255 6.22718 6.82639 6.99310 7.61315 8.03042 8.99156 Molecular weight = 301.04amu Principal moments of inertia in cm(-1) A = 0.012757 B = 0.007316 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.410665 B = 3826.305636 C = 5287.360634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.009 4.009 3 Si 0.933 3.067 4 H -0.268 1.268 5 H -0.249 1.249 6 H -0.310 1.310 7 C -0.252 4.252 8 H 0.030 0.970 9 N -0.570 5.570 10 C 0.176 3.824 11 C -0.099 4.099 12 C -0.089 4.089 13 C -0.039 4.039 14 Cl -0.061 7.061 15 C -0.095 4.095 16 C -0.059 4.059 17 Cl -0.041 7.041 18 C 0.145 3.855 19 O -0.476 6.476 20 C 0.131 3.869 21 C -0.199 4.199 22 C -0.203 4.203 23 H 0.264 0.736 24 H 0.092 0.908 25 H 0.047 0.953 26 H 0.118 0.882 27 H 0.162 0.838 28 H 0.407 0.593 29 H 0.130 0.870 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.409 -3.091 10.583 17.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.206 4.206 3 Si 0.761 3.239 4 H -0.194 1.194 5 H -0.172 1.172 6 H -0.239 1.239 7 C -0.382 4.382 8 H 0.047 0.953 9 N -0.288 5.288 10 C 0.052 3.948 11 C -0.103 4.103 12 C -0.109 4.109 13 C -0.066 4.066 14 Cl -0.032 7.032 15 C -0.115 4.115 16 C -0.087 4.087 17 Cl -0.012 7.012 18 C 0.098 3.902 19 O -0.288 6.288 20 C 0.024 3.976 21 C -0.238 4.238 22 C -0.243 4.243 23 H 0.073 0.927 24 H 0.110 0.890 25 H 0.065 0.935 26 H 0.136 0.864 27 H 0.180 0.820 28 H 0.267 0.733 29 H 0.147 0.853 30 H 0.084 0.916 31 H 0.128 0.872 32 H 0.121 0.879 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.919 -3.457 10.386 16.933 hybrid contribution -0.558 0.871 0.116 1.040 sum 12.361 -2.586 10.502 16.425 Atomic orbital electron populations 1.69997 1.07860 1.27565 1.53072 1.26079 0.95480 1.01054 0.97987 0.85981 0.80084 0.80021 0.77849 1.19415 1.17212 1.23883 1.18318 0.87293 0.92492 1.40097 0.95271 1.43663 1.05695 1.54070 1.25387 1.20203 1.00120 0.91869 0.82648 1.21069 0.94221 0.98429 0.96588 1.20983 0.97447 0.99472 0.92953 1.20711 0.91293 0.99886 0.94744 1.98357 1.40574 1.96730 1.67577 1.20855 0.91568 0.98067 1.00990 1.21160 0.94216 0.96839 0.96489 1.98357 1.54658 1.55220 1.92981 1.17852 0.90167 0.93575 0.88572 1.84884 1.22906 1.66868 1.54174 1.21314 0.92768 0.90205 0.93307 1.23169 1.02349 1.05638 0.92595 1.23105 1.01336 0.95749 1.04107 0.92732 0.89005 0.93483 0.86363 0.81999 0.73331 0.85261 0.91640 0.87195 0.87911 0.93341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.13 13.97 21.65 0.30 -56.83 16 2 C -0.01 -0.48 5.30 84.86 0.45 -0.03 16 3 Si 0.93 43.08 25.13 68.60 1.72 44.81 16 4 H -0.27 -11.52 6.72 99.48 0.67 -10.85 16 5 H -0.25 -10.73 7.11 99.48 0.71 -10.03 16 6 H -0.31 -14.85 7.11 99.48 0.71 -14.15 16 7 C -0.25 -13.71 8.37 84.03 0.70 -13.00 16 8 H 0.03 1.85 7.52 -2.91 -0.02 1.83 16 9 N -0.57 -24.99 2.35 -682.35 -1.61 -26.60 16 10 C 0.18 6.63 4.34 85.63 0.37 7.00 16 11 C -0.10 -3.44 5.47 -19.78 -0.11 -3.54 16 12 C -0.09 -3.20 9.45 22.28 0.21 -2.99 16 13 C -0.04 -1.23 6.32 22.33 0.14 -1.08 16 14 Cl -0.06 -1.77 28.95 -2.72 -0.08 -1.85 16 15 C -0.10 -2.56 9.61 22.30 0.21 -2.34 16 16 C -0.06 -1.60 6.33 22.41 0.14 -1.45 16 17 Cl -0.04 -0.93 28.50 -2.72 -0.08 -1.01 16 18 C 0.15 4.22 6.67 22.52 0.15 4.37 16 19 O -0.48 -11.39 10.83 -93.07 -1.01 -12.39 16 20 C 0.13 4.89 5.61 44.99 0.25 5.14 16 21 C -0.20 -7.46 9.83 30.62 0.30 -7.16 16 22 C -0.20 -7.55 10.10 30.62 0.31 -7.24 16 23 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 24 H 0.09 2.76 7.75 -2.39 -0.02 2.74 16 25 H 0.05 1.96 3.53 -2.39 -0.01 1.95 16 26 H 0.12 4.77 8.03 -2.91 -0.02 4.75 16 27 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 28 H 0.41 5.51 9.06 -74.06 -0.67 4.84 16 29 H 0.13 3.95 7.76 -2.39 -0.02 3.93 16 30 H 0.06 2.94 7.03 -2.38 -0.02 2.93 16 31 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 32 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 33 H 0.05 2.14 7.97 -2.38 -0.02 2.13 16 Total: -1.00 -64.56 309.36 2.84 -61.71 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.45 Total: 14.51 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: 3.14 Total: -22.34 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -1.30 Total: -83.43 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -1.01 Total: -12.39 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.72 Total: 44.81 kcal Atomic # 17 Polarization: -2.71 SS G_CDS: -0.16 Total: -2.86 kcal Total: -64.56 2.84 -61.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271145610.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.008 kcal (2) G-P(sol) polarization free energy of solvation -64.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds