Wall clock time and date at job start Tue Mar 31 2020 07:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46997 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47438 * 119.99776 * 8 6 4 11 11 H 1.48494 * 109.47197 * 239.99736 * 8 6 4 12 12 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 13 13 C 1.34779 * 119.99965 * 85.00573 * 12 2 1 14 14 O 1.21618 * 120.00050 * 359.97438 * 13 12 2 15 15 C 1.47333 * 119.99880 * 180.02562 * 13 12 2 16 16 C 1.41331 * 126.43014 * 359.68363 * 15 13 12 17 17 N 1.30425 * 108.04212 * 179.81765 * 16 15 13 18 18 N 1.39925 * 108.94321 * 0.44771 * 17 16 15 19 19 C 1.46503 * 125.75058 * 179.73116 * 18 17 16 20 20 C 1.34339 * 108.49996 * 359.71254 * 18 17 16 21 21 Br 1.89094 * 126.31282 * 180.02562 * 20 18 17 22 22 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 25 25 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 26 26 H 0.97003 * 119.99991 * 264.99646 * 12 2 1 27 27 H 1.07999 * 125.97554 * 359.97438 * 16 15 13 28 28 H 1.09001 * 109.46987 * 269.97525 * 19 18 17 29 29 H 1.09000 * 109.47177 * 29.97339 * 19 18 17 30 30 H 1.09001 * 109.47066 * 149.97608 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.1473 -2.2863 3.6039 10 1 3.1471 -0.1857 4.8162 11 1 1.1677 -1.5865 4.8165 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0183 -2.3571 14 8 1.8576 1.1617 -2.4118 15 6 2.6377 -0.7130 -3.5602 16 6 3.0161 -2.0718 -3.6490 17 7 3.3887 -2.3079 -4.8764 18 7 3.2786 -1.1275 -5.6196 19 6 3.6077 -0.9759 -7.0391 20 6 2.8199 -0.1567 -4.8123 21 35 2.4846 1.6395 -5.2992 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7094 1.1619 3.4844 26 1 2.2491 -1.6318 -1.1525 27 1 2.9974 -2.7896 -2.8424 28 1 4.6547 -0.6902 -7.1409 29 1 3.4372 -1.9210 -7.5546 30 1 2.9761 -0.2035 -7.4781 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307498071.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:55 Heat of formation + Delta-G solvation = 22.809955 kcal Electronic energy + Delta-G solvation = -16584.590722 eV Core-core repulsion = 13655.275240 eV Total energy + Delta-G solvation = -2929.315482 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 301.017 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.50053 -40.04582 -36.60844 -34.81065 -34.10233 -33.12851 -31.20615 -30.07812 -27.97199 -27.27097 -24.32189 -22.65613 -21.62799 -20.96407 -19.38392 -18.03058 -17.07347 -16.95951 -16.71450 -16.01180 -15.57852 -15.45979 -14.77143 -14.44218 -14.07336 -13.79411 -13.64670 -13.53200 -12.94683 -12.81258 -12.71469 -12.48234 -12.39492 -12.21538 -12.06239 -11.44951 -11.02419 -10.65675 -10.51316 -10.49404 -9.94727 -9.53840 -8.12201 -6.28784 -0.11583 0.09431 1.04523 1.39581 1.48188 1.49490 1.61252 2.39900 2.51557 2.69027 3.18719 3.38261 3.84949 3.93590 4.28217 4.32803 4.50863 4.57495 4.84090 5.00988 5.16039 5.18580 5.44199 5.51339 5.67929 5.76981 5.98028 6.16302 6.23697 6.79125 7.05097 7.38208 7.62096 8.94419 Molecular weight = 301.02amu Principal moments of inertia in cm(-1) A = 0.029042 B = 0.004397 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.885215 B = 6367.000908 C = 7065.826407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.274 3.726 3 H 0.002 0.998 4 C -0.543 4.543 5 H 0.075 0.925 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.971 3.029 9 H -0.259 1.259 10 H -0.285 1.285 11 H -0.280 1.280 12 N -0.698 5.698 13 C 0.570 3.430 14 O -0.579 6.579 15 C -0.270 4.270 16 C 0.092 3.908 17 N -0.284 5.284 18 N -0.338 5.338 19 C 0.077 3.923 20 C 0.117 3.883 21 Br 0.056 6.944 22 H 0.012 0.988 23 H 0.039 0.961 24 H 0.066 0.934 25 H 0.264 0.736 26 H 0.403 0.597 27 H 0.226 0.774 28 H 0.103 0.897 29 H 0.119 0.881 30 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.233 -4.592 -20.038 21.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.170 3.830 3 H 0.020 0.980 4 C -0.581 4.581 5 H 0.093 0.907 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.796 3.204 9 H -0.183 1.183 10 H -0.212 1.212 11 H -0.206 1.206 12 N -0.346 5.346 13 C 0.357 3.643 14 O -0.461 6.461 15 C -0.287 4.287 16 C -0.095 4.095 17 N -0.106 5.106 18 N -0.119 5.119 19 C -0.062 4.062 20 C -0.096 4.096 21 Br 0.139 6.861 22 H 0.031 0.969 23 H 0.059 0.941 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.238 0.762 27 H 0.242 0.758 28 H 0.122 0.878 29 H 0.137 0.863 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.303 -3.879 -21.101 22.100 hybrid contribution -0.067 -0.125 1.614 1.621 sum 5.236 -4.004 -19.487 20.571 Atomic orbital electron populations 1.21893 0.98326 0.99421 0.99538 1.18344 0.91050 0.92036 0.81527 0.98031 1.21581 1.32336 1.13496 0.90694 0.90718 1.25772 0.94930 0.95585 1.02239 1.70062 1.37170 1.23980 1.24431 0.85310 0.78036 0.78544 0.78506 1.18268 1.21158 1.20564 1.46008 1.65377 1.14043 1.09212 1.17569 0.77705 0.86062 0.82946 1.90755 1.53010 1.16802 1.85510 1.20225 1.18364 0.96249 0.93877 1.24504 0.94941 0.94394 0.95639 1.77198 1.24549 1.03893 1.04964 1.48856 1.47240 1.04672 1.11130 1.22565 1.04205 1.06676 0.72752 1.23368 1.01970 0.91236 0.93024 1.96850 1.94139 1.04043 1.91076 0.96866 0.94149 0.91543 0.92653 0.76178 0.75811 0.87839 0.86259 0.87559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.79 9.26 71.98 0.67 -6.12 16 2 C 0.27 14.25 2.56 44.25 0.11 14.36 16 3 H 0.00 0.11 7.58 -2.39 -0.02 0.09 16 4 C -0.54 -28.58 8.73 25.60 0.22 -28.35 16 5 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.78 5.30 84.66 0.45 1.23 16 7 N -0.92 -52.67 11.32 21.45 0.24 -52.43 16 8 Si 0.97 41.90 29.54 68.60 2.03 43.92 16 9 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 10 H -0.29 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 12 N -0.70 -29.47 5.06 -449.45 -2.27 -31.74 16 13 C 0.57 23.94 7.78 86.64 0.67 24.61 16 14 O -0.58 -28.42 15.00 -4.09 -0.06 -28.48 16 15 C -0.27 -8.95 6.13 -20.13 -0.12 -9.07 16 16 C 0.09 2.42 11.50 85.66 0.99 3.40 16 17 N -0.28 -7.25 12.49 -56.26 -0.70 -7.96 16 18 N -0.34 -7.92 3.98 -361.99 -1.44 -9.36 16 19 C 0.08 0.96 11.25 127.77 1.44 2.40 16 20 C 0.12 3.41 7.42 84.30 0.63 4.04 16 21 Br 0.06 1.55 31.67 -20.37 -0.65 0.90 16 22 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.07 3.71 6.07 -2.39 -0.01 3.69 16 25 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 26 H 0.40 14.09 7.49 -92.71 -0.69 13.39 16 27 H 0.23 4.36 7.50 -2.91 -0.02 4.34 16 28 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.11 1.06 7.62 -2.39 -0.02 1.04 16 Total: -1.00 -69.72 285.19 2.68 -67.04 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.48 Total: 11.60 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 5.05 Total: 6.50 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -4.18 Total: -101.49 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.06 Total: -28.48 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 35 Polarization: 1.55 SS G_CDS: -0.65 Total: 0.90 kcal Total: -69.72 2.68 -67.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307498071.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.854 kcal (2) G-P(sol) polarization free energy of solvation -69.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds