Wall clock time and date at job start Tue Mar 31 2020 07:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47118 * 2 1 4 4 C 1.50699 * 109.47243 * 119.99924 * 2 1 3 5 5 N 1.35637 * 126.43003 * 300.02855 * 4 2 1 6 6 H 0.96999 * 124.92754 * 359.97438 * 5 4 2 7 7 N 1.28473 * 110.14112 * 179.97438 * 5 4 2 8 8 C 1.31865 * 110.12304 * 359.97438 * 7 5 4 9 9 C 1.47572 * 126.46720 * 179.97438 * 8 7 5 10 10 O 1.21613 * 119.99952 * 180.02562 * 9 8 7 11 11 N 1.34777 * 120.00024 * 359.74754 * 9 8 7 12 12 C 1.36913 * 119.99772 * 180.27652 * 11 9 8 13 13 H 1.07992 * 120.00519 * 0.02562 * 12 11 9 14 14 C 1.39023 * 119.99921 * 179.97438 * 12 11 9 15 15 N 1.31384 * 119.99496 * 359.97438 * 14 12 11 16 16 Si 1.86789 * 120.00235 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47329 * 60.00031 * 16 14 12 18 18 H 1.48498 * 109.47444 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46930 * 300.00004 * 16 14 12 20 20 C 1.35431 * 126.42351 * 120.26232 * 4 2 1 21 21 Br 1.89101 * 127.23769 * 0.02562 * 20 4 2 22 22 H 1.09006 * 109.47341 * 299.99589 * 1 2 3 23 23 H 1.08994 * 109.47815 * 59.99933 * 1 2 3 24 24 H 1.09004 * 109.46814 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46814 * 240.00270 * 2 1 3 26 26 H 1.08994 * 109.47286 * 300.00388 * 3 2 1 27 27 H 1.09006 * 109.46679 * 60.00005 * 3 2 1 28 28 H 1.08998 * 109.47053 * 179.97438 * 3 2 1 29 29 H 0.97000 * 119.99736 * 0.27150 * 11 9 8 30 30 H 0.97005 * 119.99578 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7859 -0.3628 2.5182 6 1 1.2492 0.3960 2.7956 7 7 2.3666 -1.1846 3.3170 8 6 3.0160 -2.1034 2.6294 9 6 3.8055 -3.2197 3.1846 10 8 4.3597 -4.0032 2.4376 11 7 3.9169 -3.3677 4.5196 12 6 4.6541 -4.4001 5.0347 13 1 5.1465 -5.0956 4.3714 14 6 4.7695 -4.5525 6.4117 15 7 4.1716 -3.7055 7.2187 16 14 5.7758 -5.9605 7.1145 17 1 7.1808 -5.8465 6.6472 18 1 5.7417 -5.9012 8.5979 19 1 5.2054 -7.2531 6.6571 20 6 2.8182 -1.8130 1.2579 21 35 3.5036 -2.7668 -0.2242 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8932 -0.5138 -0.8900 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9563 0.8901 28 1 3.1300 1.4425 0.0005 29 1 3.4750 -2.7428 5.1154 30 1 4.2519 -3.8120 8.1795 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334267363.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:59 Heat of formation + Delta-G solvation = 24.502058 kcal Electronic energy + Delta-G solvation = -16583.127854 eV Core-core repulsion = 13653.885747 eV Total energy + Delta-G solvation = -2929.242107 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 301.017 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.35530 -37.79385 -35.79859 -33.95401 -32.09450 -31.33775 -30.13138 -28.70004 -27.42390 -25.41067 -23.24932 -22.07316 -20.42093 -18.82320 -17.84105 -17.27012 -15.87961 -15.48464 -15.06742 -14.59785 -14.07540 -13.78118 -13.43155 -13.24266 -12.97788 -12.60601 -12.48672 -11.73489 -11.49894 -11.47231 -11.31487 -11.07393 -10.81009 -10.55172 -10.43093 -10.19737 -9.66617 -9.53296 -8.87209 -8.39314 -8.38566 -7.96351 -6.44956 -3.79991 1.98440 2.08788 2.33339 3.21980 3.26064 3.26761 3.31728 4.13940 4.35098 4.40613 4.59560 4.87480 4.90943 5.22936 5.25119 5.31293 5.37006 5.37960 5.52306 5.73989 5.76256 5.98534 6.02866 6.13737 6.62055 7.19329 7.52490 8.02090 8.18485 8.63296 9.14954 9.54878 10.08059 10.71740 Molecular weight = 301.02amu Principal moments of inertia in cm(-1) A = 0.025182 B = 0.005023 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.619247 B = 5573.296918 C = 6499.128595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.031 4.031 3 C -0.147 4.147 4 C 0.048 3.952 5 N -0.387 5.387 6 H 0.442 0.558 7 N -0.266 5.266 8 C 0.057 3.943 9 C 0.500 3.500 10 O -0.571 6.571 11 N -0.533 5.533 12 C -0.296 4.296 13 H 0.108 0.892 14 C 0.025 3.975 15 N -0.888 5.888 16 Si 0.935 3.065 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.271 1.271 20 C -0.162 4.162 21 Br 0.001 6.999 22 H 0.053 0.947 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.101 0.899 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.400 0.600 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.311 10.311 -13.655 18.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.051 4.051 3 C -0.204 4.204 4 C -0.081 4.081 5 N -0.099 5.099 6 H 0.286 0.714 7 N -0.100 5.100 8 C -0.107 4.107 9 C 0.284 3.716 10 O -0.454 6.454 11 N -0.168 5.168 12 C -0.426 4.426 13 H 0.126 0.874 14 C -0.179 4.179 15 N -0.528 5.528 16 Si 0.761 3.239 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.197 1.197 20 C -0.253 4.253 21 Br 0.085 6.915 22 H 0.072 0.928 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.119 0.881 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.234 0.766 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.906 9.748 -13.345 17.911 hybrid contribution -0.124 0.176 0.596 0.634 sum -7.029 9.923 -12.749 17.619 Atomic orbital electron populations 1.21865 0.93721 1.02744 1.02114 1.19842 0.96102 0.95825 0.93307 1.21866 1.02030 0.94438 1.02113 1.21094 1.01729 0.97509 0.87796 1.43233 1.39563 1.24252 1.02871 0.71409 1.73810 1.12033 1.02985 1.21125 1.22499 1.00763 0.97392 0.90025 1.16421 0.86314 0.85487 0.83361 1.90678 1.51210 1.45285 1.58270 1.41798 1.43619 1.26788 1.04554 1.19782 1.26136 1.05841 0.90834 0.87395 1.25379 0.97840 0.98746 0.95934 1.69634 1.42466 1.36309 1.04432 0.85852 0.79984 0.80668 0.77367 1.19675 1.20897 1.19668 1.21573 1.09048 1.00762 0.93924 1.96541 1.85838 1.74577 1.34541 0.92821 0.91492 0.91835 0.88066 0.91493 0.92822 0.91832 0.76604 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.18 37.16 0.34 -0.84 16 2 C -0.03 -0.31 3.32 -91.77 -0.30 -0.61 16 3 C -0.15 -1.19 9.18 37.16 0.34 -0.85 16 4 C 0.05 0.69 5.76 -81.91 -0.47 0.22 16 5 N -0.39 -5.50 6.86 33.61 0.23 -5.27 16 6 H 0.44 4.40 8.96 -190.44 -1.71 2.69 16 7 N -0.27 -5.12 11.92 33.41 0.40 -4.72 16 8 C 0.06 1.25 7.13 -82.77 -0.59 0.66 16 9 C 0.50 13.08 7.77 -12.45 -0.10 12.98 16 10 O -0.57 -16.09 15.17 5.27 0.08 -16.01 16 11 N -0.53 -14.54 5.28 -11.91 -0.06 -14.60 16 12 C -0.30 -8.42 9.68 -14.99 -0.15 -8.57 16 13 H 0.11 3.15 7.15 -52.49 -0.38 2.78 16 14 C 0.02 0.66 5.50 -17.45 -0.10 0.57 16 15 N -0.89 -24.59 13.05 55.50 0.72 -23.86 16 16 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 C -0.16 -3.02 6.67 -39.31 -0.26 -3.28 16 21 Br 0.00 0.03 31.89 -68.01 -2.17 -2.14 16 22 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.10 1.04 7.34 -51.93 -0.38 0.66 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.40 10.75 7.62 -40.82 -0.31 10.44 16 30 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 287.44 15.07 4.33 4.33 Total: -1.00 -32.27 287.44 -7.22 -39.49 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -4.45 Total: 6.46 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -1.28 Total: 0.28 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 1.29 Total: -48.46 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.08 Total: -16.01 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 35 Polarization: 0.03 SS G_CDS: -2.17 Total: -2.14 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.27 -7.22 -39.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334267363.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.991 kcal (2) G-P(sol) polarization free energy of solvation -32.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds