Wall clock time and date at job start Tue Mar 31 2020 07:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35618 * 124.93658 * 2 1 4 4 C 1.35448 * 107.13571 * 179.97438 * 3 2 1 5 5 Br 1.89100 * 127.23490 * 179.97438 * 4 3 2 6 6 C 1.41537 * 105.52379 * 0.22343 * 4 3 2 7 7 C 1.47673 * 126.46015 * 179.77581 * 6 4 3 8 8 O 1.21580 * 120.00088 * 359.97438 * 7 6 4 9 9 N 1.34775 * 120.00503 * 180.02562 * 7 6 4 10 10 C 1.46490 * 120.00609 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.47419 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47238 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99940 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99859 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00447 * 0.02562 * 14 12 11 16 16 Si 1.86808 * 120.00045 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46647 * 60.00342 * 16 14 12 18 18 H 1.48496 * 109.47229 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47147 * 300.00493 * 16 14 12 20 20 N 1.28476 * 124.93190 * 179.97438 * 2 1 3 21 21 H 1.08996 * 109.46647 * 89.99991 * 1 2 3 22 22 H 1.08996 * 109.47502 * 209.99742 * 1 2 3 23 23 H 1.08998 * 109.46935 * 330.00235 * 1 2 3 24 24 H 1.07998 * 126.42974 * 0.03394 * 3 2 1 25 25 H 0.97009 * 119.99099 * 359.97438 * 9 7 6 26 26 H 1.09007 * 109.47149 * 299.99345 * 10 9 7 27 27 H 1.09004 * 109.47279 * 59.99342 * 10 9 7 28 28 H 1.09007 * 109.46514 * 299.99843 * 11 10 9 29 29 H 1.08998 * 109.46999 * 59.99776 * 11 10 9 30 30 H 0.97003 * 120.00623 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2416 1.1118 0.0000 4 6 3.5313 0.6977 0.0006 5 35 5.0810 1.7814 0.0002 6 6 3.4750 -0.7165 -0.0044 7 6 4.6269 -1.6406 -0.0104 8 8 5.7600 -1.1997 -0.0120 9 7 4.4223 -2.9727 -0.0153 10 6 5.5650 -3.8894 -0.0207 11 6 5.0602 -5.3337 -0.0249 12 6 6.2356 -6.2767 -0.0311 13 1 7.2422 -5.8850 -0.0324 14 6 6.0262 -7.6394 -0.0351 15 7 4.8007 -8.1164 -0.0340 16 14 7.4833 -8.8084 -0.0435 17 1 8.3111 -8.5762 1.1673 18 1 6.9934 -10.2102 -0.0475 19 1 8.3039 -8.5679 -1.2577 20 7 2.2006 -1.0533 0.0005 21 1 -0.3632 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.8966 2.1351 0.0005 25 1 3.5182 -3.3244 -0.0144 26 1 6.1684 -3.7125 -0.9111 27 1 6.1715 -3.7193 0.8689 28 1 4.4569 -5.5103 0.8657 29 1 4.4535 -5.5040 -0.9143 30 1 4.6533 -9.0752 -0.0372 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346353518.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:11 Heat of formation + Delta-G solvation = 40.337344 kcal Electronic energy + Delta-G solvation = -16055.479768 eV Core-core repulsion = 13126.924331 eV Total energy + Delta-G solvation = -2928.555437 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 301.017 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.81661 -38.85141 -34.81559 -33.83182 -32.82607 -31.92327 -29.85128 -29.48350 -27.52631 -24.85192 -22.74119 -21.50938 -20.83850 -19.84398 -17.85531 -16.57288 -16.55008 -16.16698 -14.97853 -14.73658 -14.46625 -14.07702 -13.93861 -13.42274 -13.11192 -12.88984 -12.73922 -12.24701 -11.34891 -11.19774 -11.16206 -10.97892 -10.62035 -10.32634 -10.26903 -9.68914 -9.46490 -9.41338 -9.16920 -8.88160 -8.47052 -8.27633 -6.04473 -4.07234 1.48868 1.52804 1.72538 2.38072 3.34921 3.38319 3.41406 3.65219 3.65450 4.17941 4.41839 4.46517 4.69251 4.82546 4.99045 5.09366 5.27300 5.32429 5.87298 6.35475 6.41350 6.44547 6.79690 6.96152 7.53687 7.61065 7.68041 7.93909 8.10217 8.32841 8.67215 8.98580 9.57219 11.07145 Molecular weight = 301.02amu Principal moments of inertia in cm(-1) A = 0.023875 B = 0.003572 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.514850 B = 7837.087890 C = 8983.851101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.285 5.285 3 C 0.016 3.984 4 C -0.160 4.160 5 Br 0.010 6.990 6 C 0.022 3.978 7 C 0.586 3.414 8 O -0.522 6.522 9 N -0.706 5.706 10 C 0.122 3.878 11 C 0.012 3.988 12 C -0.521 4.521 13 H 0.059 0.941 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 N -0.249 5.249 21 H 0.088 0.912 22 H 0.101 0.899 23 H 0.097 0.903 24 H 0.190 0.810 25 H 0.403 0.597 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.791 22.781 0.141 25.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.072 5.072 3 C -0.129 4.129 4 C -0.251 4.251 5 Br 0.094 6.906 6 C -0.141 4.141 7 C 0.368 3.632 8 O -0.397 6.397 9 N -0.356 5.356 10 C 0.000 4.000 11 C -0.025 4.025 12 C -0.560 4.560 13 H 0.078 0.922 14 C -0.142 4.142 15 N -0.534 5.534 16 Si 0.724 3.276 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.201 1.201 20 N -0.084 5.084 21 H 0.106 0.894 22 H 0.120 0.880 23 H 0.116 0.884 24 H 0.207 0.793 25 H 0.237 0.763 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.350 22.352 0.142 24.632 hybrid contribution 0.214 -0.389 -0.017 0.444 sum -10.135 21.963 0.125 24.189 Atomic orbital electron populations 1.22247 0.72454 1.05789 1.04798 1.45558 1.07984 1.02791 1.50884 1.22777 0.89315 0.94124 1.06728 1.21974 0.93326 0.93933 1.15844 1.96668 1.32527 1.63565 1.97858 1.22135 0.91403 0.92641 1.07957 1.16860 0.86243 0.82056 0.78053 1.90829 1.21754 1.76933 1.50165 1.46201 1.11881 1.05000 1.72514 1.21790 0.86841 0.90308 1.01045 1.19327 0.97406 0.87827 0.97943 1.21019 0.92723 0.90874 1.51348 0.92230 1.24988 0.95851 0.98379 0.95022 1.69949 1.19751 1.13262 1.50393 0.86576 0.82568 0.79624 0.78784 1.20103 1.21289 1.20109 1.73675 1.02440 1.13605 1.18712 0.89364 0.88042 0.88435 0.79255 0.76290 0.92238 0.92245 0.95880 0.95884 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.40 11.32 59.85 0.68 1.08 16 2 N -0.28 -2.89 3.72 -67.96 -0.25 -3.14 16 3 C 0.02 0.16 11.48 -16.87 -0.19 -0.03 16 4 C -0.16 -2.23 6.68 -39.32 -0.26 -2.49 16 5 Br 0.01 0.14 32.70 -68.01 -2.22 -2.09 16 6 C 0.02 0.35 7.13 -82.77 -0.59 -0.24 16 7 C 0.59 11.31 7.82 -12.41 -0.10 11.21 16 8 O -0.52 -11.27 15.60 5.29 0.08 -11.19 16 9 N -0.71 -13.75 5.55 -61.30 -0.34 -14.09 16 10 C 0.12 2.71 5.61 -4.04 -0.02 2.69 16 11 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 12 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 13 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 16 Si 0.90 21.65 29.54 -169.99 -5.02 16.62 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 N -0.25 -3.53 11.66 33.42 0.39 -3.14 16 21 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 22 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.10 0.16 8.13 -51.93 -0.42 -0.27 16 24 H 0.19 1.04 8.06 -52.49 -0.42 0.62 16 25 H 0.40 7.27 8.19 -40.82 -0.33 6.94 16 26 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 292.36 15.07 4.41 4.41 Total: -1.00 -33.97 292.36 -6.52 -40.49 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -3.26 Total: -1.07 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -1.04 Total: -1.02 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.53 Total: -46.15 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 35 Polarization: 0.14 SS G_CDS: -2.22 Total: -2.09 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.97 -6.52 -40.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346353518.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.825 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds