Wall clock time and date at job start Tue Mar 31 2020 08:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00221 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00208 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00271 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46904 * 110.99716 * 274.99847 * 12 2 1 14 14 C 1.50700 * 109.47105 * 179.97438 * 13 12 2 15 15 C 1.38250 * 119.97751 * 259.72494 * 14 13 12 16 16 C 1.38187 * 120.02789 * 179.76506 * 15 14 13 17 17 C 1.38486 * 119.99647 * 0.53300 * 16 15 14 18 18 F 1.35106 * 120.01966 * 179.74049 * 17 16 15 19 19 C 1.38420 * 119.95919 * 359.72250 * 17 16 15 20 20 C 1.38309 * 119.96429 * 359.97438 * 19 17 16 21 21 Br 1.89099 * 119.99485 * 180.02562 * 20 19 17 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 26 26 H 1.00897 * 110.99997 * 151.04377 * 12 2 1 27 27 H 1.08996 * 109.46868 * 300.00084 * 13 12 2 28 28 H 1.09007 * 109.46973 * 59.99616 * 13 12 2 29 29 H 1.07994 * 119.98616 * 359.97438 * 15 14 13 30 30 H 1.08002 * 119.99780 * 180.22963 * 16 15 14 31 31 H 1.07999 * 120.01867 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5874 -0.5218 3.5560 15 6 1.6963 -0.9688 4.5139 16 6 2.1577 -1.6557 5.6206 17 6 3.5142 -1.8870 5.7761 18 9 3.9663 -2.5539 6.8606 19 6 4.4066 -1.4347 4.8195 20 6 3.9425 -0.7528 3.7093 21 35 5.1608 -0.1352 2.4015 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7089 1.1613 -3.4844 26 1 2.9173 -1.1206 1.0287 27 1 2.7589 1.0461 2.1182 28 1 1.0871 0.6164 2.5525 29 1 0.6389 -0.7839 4.3955 30 1 1.4608 -2.0079 6.3668 31 1 5.4647 -1.6149 4.9395 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389873441.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:34 Heat of formation + Delta-G solvation = -21.812918 kcal Electronic energy + Delta-G solvation = -16350.842381 eV Core-core repulsion = 13399.671944 eV Total energy + Delta-G solvation = -2951.170437 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 301.017 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.00567 -39.34246 -35.89141 -33.03014 -32.32252 -30.98584 -29.47311 -27.95806 -25.36639 -24.25924 -22.94892 -21.26758 -19.78835 -17.63545 -16.82660 -16.56135 -15.72825 -15.42979 -14.82914 -14.32719 -14.02281 -13.81099 -13.63332 -13.41340 -12.79431 -12.55918 -11.87904 -11.77906 -11.19593 -11.11850 -10.86539 -10.76171 -10.74447 -10.39866 -10.15768 -10.10040 -9.90174 -9.00473 -8.86656 -8.57861 -8.46165 -7.32508 -6.03164 -4.09144 0.89012 1.04594 1.60420 3.29997 3.35967 3.36713 3.40229 4.14520 4.40381 4.61047 4.77749 4.84060 5.12598 5.28298 5.42409 5.52647 5.77156 5.84339 5.88144 6.03225 6.18490 6.45407 6.67427 6.85269 7.11419 7.19575 7.46028 7.77342 7.87501 8.25083 8.34108 8.62592 9.00146 9.56655 11.03204 Molecular weight = 301.02amu Principal moments of inertia in cm(-1) A = 0.022505 B = 0.004973 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.869026 B = 5629.252713 C = 6347.190884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.003 0.997 4 C -0.516 4.516 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.680 5.680 13 C 0.085 3.915 14 C -0.045 4.045 15 C -0.071 4.071 16 C -0.139 4.139 17 C 0.091 3.909 18 F -0.139 7.139 19 C -0.127 4.127 20 C -0.066 4.066 21 Br -0.029 7.029 22 H 0.081 0.919 23 H 0.004 0.996 24 H 0.032 0.968 25 H 0.261 0.739 26 H 0.334 0.666 27 H 0.043 0.957 28 H 0.079 0.921 29 H 0.143 0.857 30 H 0.139 0.861 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.890 -1.658 15.394 16.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.105 3.895 3 H 0.021 0.979 4 C -0.555 4.555 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.312 5.312 13 C -0.044 4.044 14 C -0.048 4.048 15 C -0.090 4.090 16 C -0.158 4.158 17 C 0.071 3.929 18 F -0.118 7.118 19 C -0.148 4.148 20 C -0.146 4.146 21 Br 0.057 6.943 22 H 0.100 0.900 23 H 0.023 0.977 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.152 0.848 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.161 0.839 30 H 0.157 0.843 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.668 -1.561 14.935 16.050 hybrid contribution 0.887 -0.231 -0.578 1.084 sum 6.556 -1.792 14.357 15.884 Atomic orbital electron populations 1.21729 0.97829 0.99383 0.99378 1.19126 0.92568 0.92474 0.85300 0.97891 1.21228 1.31398 1.12481 0.90347 0.92252 1.24892 0.95058 0.94965 0.98970 1.69893 1.36713 1.22832 1.23447 0.86542 0.79278 0.79354 0.82510 1.20602 1.21285 1.19918 1.60898 1.32554 1.32216 1.05529 1.21066 1.00571 0.93876 0.88918 1.20123 0.90896 0.96915 0.96835 1.20962 1.00309 0.95813 0.91914 1.21258 0.93712 1.00924 0.99889 1.17490 0.92541 0.97502 0.85360 1.91500 1.89791 1.78223 1.52270 1.20973 1.00512 0.99994 0.93324 1.21590 0.93992 1.03446 0.95583 1.96801 1.57874 1.87357 1.52242 0.90035 0.97727 0.94919 0.92939 0.84769 0.93890 0.90252 0.83905 0.84306 0.84074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.03 9.19 37.16 0.34 -2.69 16 2 C 0.21 5.28 2.60 -68.86 -0.18 5.10 16 3 H 0.00 0.09 7.80 -51.93 -0.40 -0.31 16 4 C -0.52 -14.02 8.59 -34.44 -0.30 -14.31 16 5 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.13 11.32 55.43 0.63 -24.51 16 8 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.68 -14.25 6.29 -109.21 -0.69 -14.94 16 13 C 0.09 1.48 4.99 -4.97 -0.02 1.45 16 14 C -0.05 -0.67 5.40 -104.59 -0.56 -1.23 16 15 C -0.07 -0.88 9.67 -39.60 -0.38 -1.27 16 16 C -0.14 -1.56 10.03 -39.51 -0.40 -1.96 16 17 C 0.09 1.12 7.30 -39.42 -0.29 0.83 16 18 F -0.14 -1.70 17.27 2.25 0.04 -1.66 16 19 C -0.13 -1.61 9.77 -39.49 -0.39 -1.99 16 20 C -0.07 -0.94 6.21 -39.53 -0.25 -1.18 16 21 Br -0.03 -0.42 31.02 -68.01 -2.11 -2.53 16 22 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 23 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.33 7.06 7.16 -39.29 -0.28 6.78 16 27 H 0.04 0.77 7.06 -51.93 -0.37 0.41 16 28 H 0.08 1.33 7.29 -51.93 -0.38 0.96 16 29 H 0.14 1.56 8.03 -52.49 -0.42 1.13 16 30 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 286.85 15.07 4.32 4.32 Total: -1.00 -27.96 286.85 -8.70 -36.66 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -3.36 Total: 2.11 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -2.52 Total: -15.63 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: -0.06 Total: -39.45 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -2.11 Total: -2.53 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.96 -8.70 -36.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389873441.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.847 kcal (2) G-P(sol) polarization free energy of solvation -27.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds