Wall clock time and date at job start Tue Mar 31 2020 08:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00221 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00208 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00271 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46904 * 110.99716 * 274.99847 * 12 2 1 14 14 C 1.50700 * 109.47105 * 179.97438 * 13 12 2 15 15 C 1.38250 * 119.97751 * 259.72494 * 14 13 12 16 16 C 1.38187 * 120.02789 * 179.76506 * 15 14 13 17 17 C 1.38486 * 119.99647 * 0.53300 * 16 15 14 18 18 F 1.35106 * 120.01966 * 179.74049 * 17 16 15 19 19 C 1.38420 * 119.95919 * 359.72250 * 17 16 15 20 20 C 1.38309 * 119.96429 * 359.97438 * 19 17 16 21 21 Br 1.89099 * 119.99485 * 180.02562 * 20 19 17 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 26 26 H 1.00897 * 110.99997 * 151.04377 * 12 2 1 27 27 H 1.08996 * 109.46868 * 300.00084 * 13 12 2 28 28 H 1.09007 * 109.46973 * 59.99616 * 13 12 2 29 29 H 1.07994 * 119.98616 * 359.97438 * 15 14 13 30 30 H 1.08002 * 119.99780 * 180.22963 * 16 15 14 31 31 H 1.07999 * 120.01867 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5874 -0.5218 3.5560 15 6 1.6963 -0.9688 4.5139 16 6 2.1577 -1.6557 5.6206 17 6 3.5142 -1.8870 5.7761 18 9 3.9663 -2.5539 6.8606 19 6 4.4066 -1.4347 4.8195 20 6 3.9425 -0.7528 3.7093 21 35 5.1608 -0.1352 2.4015 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7089 1.1613 -3.4844 26 1 2.9173 -1.1206 1.0287 27 1 2.7589 1.0461 2.1182 28 1 1.0871 0.6164 2.5525 29 1 0.6389 -0.7839 4.3955 30 1 1.4608 -2.0079 6.3668 31 1 5.4647 -1.6149 4.9395 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389873441.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:33 Heat of formation + Delta-G solvation = -37.460833 kcal Electronic energy + Delta-G solvation = -16351.520926 eV Core-core repulsion = 13399.671944 eV Total energy + Delta-G solvation = -2951.848981 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 301.017 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.96612 -40.40943 -37.59483 -34.77972 -33.42448 -32.47173 -30.61055 -29.54527 -27.34524 -25.73626 -23.94700 -22.44980 -21.66086 -18.74663 -18.47733 -17.73253 -16.95947 -16.68196 -16.47480 -15.77384 -15.50880 -15.14735 -14.71080 -14.57782 -14.41355 -13.80855 -13.51797 -13.29114 -12.94467 -12.66660 -12.58096 -12.25156 -12.17734 -12.07242 -11.88374 -11.80612 -11.18924 -10.87047 -10.55317 -10.01079 -9.65922 -9.04881 -8.11327 -6.24419 -0.12234 0.04408 0.52297 1.42763 1.43743 1.53488 2.34375 2.44043 3.16377 3.17679 3.59730 3.66062 3.90185 3.95647 4.10248 4.40636 4.56470 4.75280 4.84975 4.87997 4.90870 5.06058 5.12628 5.25140 5.35372 5.50412 5.68013 5.70951 5.89755 6.25881 6.45758 6.75767 6.99043 7.45428 8.94096 Molecular weight = 301.02amu Principal moments of inertia in cm(-1) A = 0.022505 B = 0.004973 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.869026 B = 5629.252713 C = 6347.190884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.217 3.783 3 H -0.027 1.027 4 C -0.534 4.534 5 H 0.055 0.945 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.957 3.043 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.677 5.677 13 C 0.089 3.911 14 C -0.064 4.064 15 C -0.068 4.068 16 C -0.126 4.126 17 C 0.092 3.908 18 F -0.137 7.137 19 C -0.128 4.128 20 C -0.075 4.075 21 Br -0.043 7.043 22 H 0.056 0.944 23 H 0.027 0.973 24 H 0.028 0.972 25 H 0.262 0.738 26 H 0.332 0.668 27 H 0.033 0.967 28 H 0.085 0.915 29 H 0.161 0.839 30 H 0.171 0.829 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.757 -2.715 16.634 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.109 3.891 3 H -0.010 1.010 4 C -0.573 4.573 5 H 0.073 0.927 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.782 3.218 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.308 5.308 13 C -0.040 4.040 14 C -0.066 4.066 15 C -0.087 4.087 16 C -0.145 4.145 17 C 0.072 3.928 18 F -0.116 7.116 19 C -0.149 4.149 20 C -0.155 4.155 21 Br 0.043 6.957 22 H 0.075 0.925 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.150 0.850 27 H 0.051 0.949 28 H 0.103 0.897 29 H 0.179 0.821 30 H 0.188 0.812 31 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.539 -2.623 16.197 17.318 hybrid contribution 0.934 0.091 -0.846 1.263 sum 6.473 -2.532 15.351 16.852 Atomic orbital electron populations 1.21545 0.97395 0.98969 0.99279 1.18916 0.92861 0.90855 0.86436 1.00959 1.21534 1.31529 1.12535 0.91662 0.92716 1.25643 0.95219 0.95633 1.01754 1.70012 1.37491 1.23906 1.24082 0.85578 0.78852 0.78317 0.79021 1.20069 1.20905 1.19459 1.60804 1.32414 1.32547 1.05045 1.21008 1.00847 0.93405 0.88717 1.19947 0.91567 0.98406 0.96705 1.21162 1.00842 0.95203 0.91510 1.21549 0.93784 0.99414 0.99757 1.17609 0.92964 0.97110 0.85135 1.91513 1.89843 1.78114 1.52088 1.21103 1.01494 0.99462 0.92823 1.21597 0.93633 1.04297 0.95957 1.96785 1.58308 1.87609 1.53037 0.92525 0.95400 0.95283 0.92870 0.85031 0.94898 0.89708 0.82132 0.81160 0.82748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.51 9.19 71.98 0.66 -4.85 16 2 C 0.22 10.93 2.60 44.17 0.11 11.05 16 3 H -0.03 -1.51 7.80 -2.39 -0.02 -1.53 16 4 C -0.53 -29.28 8.59 25.60 0.22 -29.06 16 5 H 0.05 2.98 7.62 -2.91 -0.02 2.96 16 6 C 0.02 0.93 5.30 84.65 0.45 1.38 16 7 N -0.92 -52.27 11.32 21.45 0.24 -52.03 16 8 Si 0.96 43.47 29.54 68.60 2.03 45.49 16 9 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 N -0.68 -28.30 6.29 -499.43 -3.14 -31.44 16 13 C 0.09 3.07 4.99 85.56 0.43 3.49 16 14 C -0.06 -1.80 5.40 -19.84 -0.11 -1.91 16 15 C -0.07 -1.52 9.67 22.26 0.22 -1.30 16 16 C -0.13 -2.41 10.03 22.32 0.22 -2.19 16 17 C 0.09 1.99 7.30 22.37 0.16 2.16 16 18 F -0.14 -2.94 17.27 44.97 0.78 -2.17 16 19 C -0.13 -3.00 9.77 22.33 0.22 -2.78 16 20 C -0.07 -2.04 6.21 22.30 0.14 -1.91 16 21 Br -0.04 -1.27 31.02 -20.37 -0.63 -1.90 16 22 H 0.06 3.03 6.07 -2.39 -0.01 3.02 16 23 H 0.03 1.17 7.45 -2.39 -0.02 1.15 16 24 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 25 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 26 H 0.33 14.08 7.16 -89.70 -0.64 13.43 16 27 H 0.03 1.20 7.06 -2.39 -0.02 1.18 16 28 H 0.08 2.77 7.29 -2.38 -0.02 2.75 16 29 H 0.16 2.98 8.03 -2.91 -0.02 2.96 16 30 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 31 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -59.18 286.85 2.51 -56.68 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.51 Total: 11.29 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: 2.72 Total: -25.92 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -2.90 Total: -83.47 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.78 Total: -2.17 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 35 Polarization: -1.27 SS G_CDS: -0.63 Total: -1.90 kcal Total: -59.18 2.51 -56.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389873441.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.214 kcal (2) G-P(sol) polarization free energy of solvation -59.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds