Wall clock time and date at job start Tue Mar 31 2020 08:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36943 * 119.99669 * 2 1 4 4 H 1.07999 * 119.99719 * 178.14577 * 3 2 1 5 5 C 1.38810 * 120.00000 * 358.13616 * 3 2 1 6 6 N 1.31620 * 119.99931 * 33.41027 * 5 3 2 7 7 Si 1.86797 * 120.00265 * 213.40316 * 5 3 2 8 8 H 1.48501 * 109.46860 * 95.00477 * 7 5 3 9 9 H 1.48497 * 109.47358 * 215.00361 * 7 5 3 10 10 H 1.48499 * 109.47009 * 335.00527 * 7 5 3 11 11 S 1.65596 * 120.00436 * 180.02562 * 2 1 3 12 12 O 1.42098 * 106.40440 * 156.45630 * 11 2 1 13 13 O 1.42096 * 106.40172 * 23.53068 * 11 2 1 14 14 C 1.76208 * 107.21730 * 269.99480 * 11 2 1 15 15 C 1.32560 * 119.99792 * 116.64589 * 14 11 2 16 16 C 1.47809 * 120.00455 * 18.85625 * 15 14 11 17 17 C 1.39563 * 120.13418 * 42.39606 * 16 15 14 18 18 C 1.37953 * 119.88686 * 180.27464 * 17 16 15 19 19 C 1.38351 * 120.15435 * 359.75030 * 18 17 16 20 20 C 1.38439 * 120.27150 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 119.93968 * 179.97438 * 20 19 18 22 22 C 1.38112 * 120.11503 * 0.02562 * 20 19 18 23 23 H 1.09007 * 109.46873 * 276.24031 * 1 2 3 24 24 H 1.08993 * 109.47667 * 36.24268 * 1 2 3 25 25 H 1.09004 * 109.47289 * 156.24897 * 1 2 3 26 26 H 0.97001 * 120.00389 * 179.97438 * 6 5 3 27 27 H 1.08000 * 119.99947 * 296.65118 * 14 11 2 28 28 H 1.08008 * 120.00106 * 198.86095 * 15 14 11 29 29 H 1.07999 * 120.05657 * 0.02562 * 17 16 15 30 30 H 1.08001 * 119.92965 * 179.72140 * 18 17 16 31 31 H 1.08000 * 119.86473 * 179.97438 * 19 18 17 32 32 H 1.08006 * 120.08037 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.2291 1.1863 0.0303 5 6 1.4560 2.3878 -0.0391 6 7 0.2857 2.4918 0.5542 7 14 2.1836 3.8574 -0.9335 8 1 1.6464 3.9105 -2.3170 9 1 1.8207 5.1045 -0.2136 10 1 3.6619 3.7257 -0.9812 11 16 2.2930 -1.4340 -0.0006 12 8 3.5759 -1.1564 -0.5450 13 8 1.4114 -2.4062 -0.5453 14 6 2.5540 -1.8864 1.6823 15 6 2.0094 -2.9955 2.1625 16 6 1.5487 -4.0529 1.2383 17 6 2.3279 -4.4088 0.1365 18 6 1.8903 -5.3925 -0.7260 19 6 0.6838 -6.0301 -0.4982 20 6 -0.0916 -5.6862 0.5958 21 17 -1.6044 -6.4915 0.8731 22 6 0.3358 -4.7030 1.4665 23 1 -0.3633 0.1117 1.0217 24 1 -0.3634 0.8287 -0.6075 25 1 -0.3634 -0.9406 -0.4139 26 1 -0.1988 3.3317 0.5272 27 1 3.1575 -1.2600 2.3225 28 1 1.9023 -3.1264 3.2293 29 1 3.2700 -3.9121 -0.0429 30 1 2.4907 -5.6652 -1.5814 31 1 0.3456 -6.7993 -1.1767 32 1 -0.2698 -4.4349 2.3197 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588481147.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:22 Heat of formation + Delta-G solvation = -6.286436 kcal Electronic energy + Delta-G solvation = -20264.730848 eV Core-core repulsion = 16959.041458 eV Total energy + Delta-G solvation = -3305.689391 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 301.033 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.13441 -36.44879 -35.78982 -35.74844 -34.50983 -33.71508 -31.63656 -30.57594 -29.13720 -26.55313 -23.63809 -23.26073 -22.38620 -20.25667 -18.40390 -17.47059 -16.89787 -16.25785 -15.82525 -15.29912 -14.84363 -14.55670 -14.41569 -13.83801 -13.55827 -13.37562 -13.13632 -12.76092 -12.54669 -12.03474 -11.70883 -11.59109 -11.45195 -11.23833 -11.02699 -10.91507 -10.71924 -10.64929 -10.55432 -10.27239 -10.19516 -9.94215 -9.54181 -9.24520 -8.48933 -8.31617 -7.96524 -6.75595 -3.91279 1.00649 1.53744 1.69019 2.26429 2.40012 3.05832 3.14371 3.20902 3.91352 3.97660 4.38727 4.57047 4.85561 5.01878 5.06613 5.20273 5.37558 5.59386 5.62012 5.84405 6.01331 6.08223 6.26574 6.35469 6.47410 6.51357 6.71475 6.79023 6.86564 6.93155 7.05001 7.16601 7.34241 8.13312 8.56267 8.97881 10.24510 Molecular weight = 301.03amu Principal moments of inertia in cm(-1) A = 0.026918 B = 0.004509 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.942175 B = 6208.394601 C = 6641.954136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.802 5.802 3 C -0.251 4.251 4 H 0.121 0.879 5 C 0.032 3.968 6 N -0.826 5.826 7 Si 0.928 3.072 8 H -0.271 1.271 9 H -0.281 1.281 10 H -0.261 1.261 11 S 2.522 3.478 12 O -0.987 6.987 13 O -0.981 6.981 14 C -0.723 4.723 15 C -0.012 4.012 16 C -0.049 4.049 17 C -0.046 4.046 18 C -0.107 4.107 19 C -0.103 4.103 20 C -0.041 4.041 21 Cl -0.086 7.086 22 C -0.089 4.089 23 H 0.040 0.960 24 H 0.085 0.915 25 H 0.051 0.949 26 H 0.276 0.724 27 H 0.144 0.856 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.067 -9.788 1.286 9.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.626 5.626 3 C -0.397 4.397 4 H 0.139 0.861 5 C -0.180 4.180 6 N -0.464 5.464 7 Si 0.752 3.248 8 H -0.196 1.196 9 H -0.207 1.207 10 H -0.185 1.185 11 S 2.619 3.381 12 O -0.977 6.977 13 O -0.971 6.971 14 C -0.820 4.820 15 C -0.033 4.033 16 C -0.050 4.050 17 C -0.065 4.065 18 C -0.125 4.125 19 C -0.122 4.122 20 C -0.068 4.068 21 Cl -0.057 7.057 22 C -0.108 4.108 23 H 0.059 0.941 24 H 0.103 0.897 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.162 0.838 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.058 -10.481 0.723 10.559 hybrid contribution -0.087 0.965 0.914 1.332 sum -1.145 -9.516 1.637 9.724 Atomic orbital electron populations 1.21667 0.80059 1.00845 1.01686 1.55424 1.13426 1.19190 1.74514 1.20166 0.93368 0.82898 1.43313 0.86136 1.25515 0.96494 0.99160 0.96876 1.70314 1.14464 1.27374 1.34241 0.85881 0.80235 0.78893 0.79790 1.19647 1.20659 1.18460 1.11404 0.74130 0.74119 0.78449 1.93372 1.41144 1.84603 1.78614 1.93504 1.65672 1.59048 1.78842 1.35247 1.05792 1.04564 1.36389 1.21340 0.92643 0.91247 0.98042 1.18968 0.94634 0.95991 0.95429 1.21117 0.98583 0.94584 0.92187 1.20788 0.95989 0.96627 0.99131 1.20938 0.94437 1.00608 0.96241 1.20617 0.88883 0.98551 0.98703 1.98335 1.32078 1.79104 1.96220 1.20894 0.95718 0.94917 0.99302 0.94138 0.89652 0.93050 0.91338 0.83770 0.86866 0.86746 0.85265 0.85462 0.85279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.33 9.12 59.84 0.55 2.87 16 2 N -0.80 -19.17 3.32 -66.69 -0.22 -19.39 16 3 C -0.25 -6.23 9.39 -15.06 -0.14 -6.37 16 4 H 0.12 2.97 7.38 -52.49 -0.39 2.58 16 5 C 0.03 0.76 4.84 -17.43 -0.08 0.68 16 6 N -0.83 -19.83 10.80 55.49 0.60 -19.23 16 7 Si 0.93 18.47 29.66 -169.99 -5.04 13.43 16 8 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 9 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 10 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 11 S 2.52 57.02 4.67 -107.50 -0.50 56.52 16 12 O -0.99 -24.90 16.84 -57.17 -0.96 -25.87 16 13 O -0.98 -22.12 11.49 -57.17 -0.66 -22.77 16 14 C -0.72 -14.38 10.06 28.82 0.29 -14.09 16 15 C -0.01 -0.22 9.73 -37.58 -0.37 -0.59 16 16 C -0.05 -0.87 4.07 -105.02 -0.43 -1.30 16 17 C -0.05 -0.81 6.36 -39.19 -0.25 -1.05 16 18 C -0.11 -1.64 10.03 -39.64 -0.40 -2.04 16 19 C -0.10 -1.50 9.82 -39.47 -0.39 -1.89 16 20 C -0.04 -0.63 6.31 -39.55 -0.25 -0.88 16 21 Cl -0.09 -1.15 28.95 -51.86 -1.50 -2.65 16 22 C -0.09 -1.44 9.57 -39.16 -0.37 -1.82 16 23 H 0.04 0.91 7.97 -51.93 -0.41 0.50 16 24 H 0.09 1.97 6.31 -51.93 -0.33 1.65 16 25 H 0.05 1.08 6.89 -51.93 -0.36 0.73 16 26 H 0.28 6.15 8.31 -40.82 -0.34 5.81 16 27 H 0.14 2.74 8.06 -52.49 -0.42 2.32 16 28 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 29 H 0.11 2.02 7.17 -52.49 -0.38 1.65 16 30 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 31 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.13 1.83 8.06 -52.48 -0.42 1.41 16 LS Contribution 300.68 15.07 4.53 4.53 Total: -1.00 -27.82 300.68 -8.71 -36.53 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -3.11 Total: 5.35 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: -1.84 Total: -26.45 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.38 Total: -38.61 kcal Atomic # 8 Polarization: -47.02 SS G_CDS: -1.62 Total: -48.64 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.04 Total: 13.43 kcal Atomic # 16 Polarization: 57.02 SS G_CDS: -0.50 Total: 56.52 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.50 Total: -2.65 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.82 -8.71 -36.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588481147.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.243 kcal (2) G-P(sol) polarization free energy of solvation -27.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds