Wall clock time and date at job start Tue Mar 31 2020 08:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36943 * 119.99669 * 2 1 4 4 H 1.07999 * 119.99719 * 178.14577 * 3 2 1 5 5 C 1.38810 * 120.00000 * 358.13616 * 3 2 1 6 6 N 1.31620 * 119.99931 * 33.41027 * 5 3 2 7 7 Si 1.86797 * 120.00265 * 213.40316 * 5 3 2 8 8 H 1.48501 * 109.46860 * 95.00477 * 7 5 3 9 9 H 1.48497 * 109.47358 * 215.00361 * 7 5 3 10 10 H 1.48499 * 109.47009 * 335.00527 * 7 5 3 11 11 S 1.65596 * 120.00436 * 180.02562 * 2 1 3 12 12 O 1.42098 * 106.40440 * 156.45630 * 11 2 1 13 13 O 1.42096 * 106.40172 * 23.53068 * 11 2 1 14 14 C 1.76208 * 107.21730 * 269.99480 * 11 2 1 15 15 C 1.32560 * 119.99792 * 116.64589 * 14 11 2 16 16 C 1.47809 * 120.00455 * 18.85625 * 15 14 11 17 17 C 1.39563 * 120.13418 * 42.39606 * 16 15 14 18 18 C 1.37953 * 119.88686 * 180.27464 * 17 16 15 19 19 C 1.38351 * 120.15435 * 359.75030 * 18 17 16 20 20 C 1.38439 * 120.27150 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 119.93968 * 179.97438 * 20 19 18 22 22 C 1.38112 * 120.11503 * 0.02562 * 20 19 18 23 23 H 1.09007 * 109.46873 * 276.24031 * 1 2 3 24 24 H 1.08993 * 109.47667 * 36.24268 * 1 2 3 25 25 H 1.09004 * 109.47289 * 156.24897 * 1 2 3 26 26 H 0.97001 * 120.00389 * 179.97438 * 6 5 3 27 27 H 1.08000 * 119.99947 * 296.65118 * 14 11 2 28 28 H 1.08008 * 120.00106 * 198.86095 * 15 14 11 29 29 H 1.07999 * 120.05657 * 0.02562 * 17 16 15 30 30 H 1.08001 * 119.92965 * 179.72140 * 18 17 16 31 31 H 1.08000 * 119.86473 * 179.97438 * 19 18 17 32 32 H 1.08006 * 120.08037 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.2291 1.1863 0.0303 5 6 1.4560 2.3878 -0.0391 6 7 0.2857 2.4918 0.5542 7 14 2.1836 3.8574 -0.9335 8 1 1.6464 3.9105 -2.3170 9 1 1.8207 5.1045 -0.2136 10 1 3.6619 3.7257 -0.9812 11 16 2.2930 -1.4340 -0.0006 12 8 3.5759 -1.1564 -0.5450 13 8 1.4114 -2.4062 -0.5453 14 6 2.5540 -1.8864 1.6823 15 6 2.0094 -2.9955 2.1625 16 6 1.5487 -4.0529 1.2383 17 6 2.3279 -4.4088 0.1365 18 6 1.8903 -5.3925 -0.7260 19 6 0.6838 -6.0301 -0.4982 20 6 -0.0916 -5.6862 0.5958 21 17 -1.6044 -6.4915 0.8731 22 6 0.3358 -4.7030 1.4665 23 1 -0.3633 0.1117 1.0217 24 1 -0.3634 0.8287 -0.6075 25 1 -0.3634 -0.9406 -0.4139 26 1 -0.1988 3.3317 0.5272 27 1 3.1575 -1.2600 2.3225 28 1 1.9023 -3.1264 3.2293 29 1 3.2700 -3.9121 -0.0429 30 1 2.4907 -5.6652 -1.5814 31 1 0.3456 -6.7993 -1.1767 32 1 -0.2698 -4.4349 2.3197 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588481147.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:21 Heat of formation + Delta-G solvation = -22.271865 kcal Electronic energy + Delta-G solvation = -20265.424029 eV Core-core repulsion = 16959.041458 eV Total energy + Delta-G solvation = -3306.382571 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 301.033 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.42041 -37.87753 -37.52056 -37.39451 -36.45242 -35.20296 -33.35090 -31.81801 -30.50217 -28.30152 -25.42370 -24.68265 -23.63344 -21.76104 -20.16879 -19.06699 -18.62274 -17.93522 -17.20646 -16.76312 -16.33697 -16.19380 -15.96659 -15.39462 -15.05585 -14.77060 -14.59374 -14.35387 -13.97265 -13.73930 -13.39605 -13.17502 -12.84632 -12.68172 -12.63221 -12.51017 -12.35672 -12.19213 -12.05513 -11.94754 -11.82544 -11.60618 -11.08410 -10.97347 -10.06197 -9.75510 -9.33541 -8.42336 -5.75953 -0.46083 0.00430 0.29180 0.89672 1.15382 1.45758 1.52404 1.63003 2.27699 2.61620 2.70462 2.84403 3.22768 3.48366 3.83441 3.87696 3.98465 4.14691 4.36472 4.45841 4.49936 4.72186 4.80017 4.98447 5.02146 5.05761 5.11951 5.24860 5.35256 5.43332 5.45170 5.61154 5.81359 6.38973 6.87456 7.25047 8.61582 Molecular weight = 301.03amu Principal moments of inertia in cm(-1) A = 0.026918 B = 0.004509 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.942175 B = 6208.394601 C = 6641.954136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.837 5.837 3 C -0.319 4.319 4 H 0.105 0.895 5 C 0.006 3.994 6 N -0.866 5.866 7 Si 0.974 3.026 8 H -0.271 1.271 9 H -0.274 1.274 10 H -0.263 1.263 11 S 2.592 3.408 12 O -1.015 7.015 13 O -0.977 6.977 14 C -0.759 4.759 15 C 0.035 3.965 16 C -0.085 4.085 17 C -0.070 4.070 18 C -0.111 4.111 19 C -0.095 4.095 20 C -0.050 4.050 21 Cl -0.067 7.067 22 C -0.090 4.090 23 H 0.033 0.967 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.277 0.723 27 H 0.154 0.846 28 H 0.156 0.844 29 H 0.106 0.894 30 H 0.156 0.844 31 H 0.158 0.842 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.609 -12.783 1.658 12.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.665 5.665 3 C -0.458 4.458 4 H 0.123 0.877 5 C -0.202 4.202 6 N -0.504 5.504 7 Si 0.797 3.203 8 H -0.197 1.197 9 H -0.199 1.199 10 H -0.187 1.187 11 S 2.690 3.310 12 O -1.006 7.006 13 O -0.967 6.967 14 C -0.862 4.862 15 C 0.015 3.985 16 C -0.086 4.086 17 C -0.090 4.090 18 C -0.130 4.130 19 C -0.114 4.114 20 C -0.077 4.077 21 Cl -0.038 7.038 22 C -0.108 4.108 23 H 0.052 0.948 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.172 0.828 28 H 0.173 0.827 29 H 0.124 0.876 30 H 0.173 0.827 31 H 0.175 0.825 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.615 -13.340 1.050 13.479 hybrid contribution 0.105 1.160 0.876 1.458 sum -1.510 -12.180 1.926 12.424 Atomic orbital electron populations 1.21439 0.79441 1.00714 1.01100 1.54384 1.13628 1.18887 1.79587 1.19852 0.92740 0.83724 1.49480 0.87698 1.25983 0.96863 1.00658 0.96719 1.70349 1.16076 1.27976 1.36031 0.85214 0.79345 0.76923 0.78820 1.19674 1.19930 1.18749 1.06929 0.73162 0.72984 0.77961 1.93372 1.42406 1.85268 1.79519 1.93553 1.65872 1.58276 1.79027 1.34523 1.10852 1.07679 1.33161 1.21875 0.87029 0.89214 1.00393 1.19129 0.96073 0.97171 0.96200 1.21302 0.98755 0.95935 0.92959 1.21166 0.96593 0.95811 0.99385 1.21353 0.93599 1.00355 0.96059 1.20820 0.89755 0.98395 0.98691 1.98348 1.30751 1.78594 1.96143 1.21123 0.95192 0.94541 0.99963 0.94795 0.90974 0.92023 0.91358 0.82777 0.82683 0.87626 0.82651 0.82480 0.83435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.48 9.12 127.77 1.17 6.64 16 2 N -0.84 -41.04 3.32 -364.91 -1.21 -42.25 16 3 C -0.32 -16.66 9.39 84.03 0.79 -15.87 16 4 H 0.11 5.53 7.38 -2.91 -0.02 5.51 16 5 C 0.01 0.28 4.84 84.86 0.41 0.69 16 6 N -0.87 -43.63 10.80 21.65 0.23 -43.39 16 7 Si 0.97 39.57 29.66 68.60 2.03 41.60 16 8 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 9 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 10 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 11 S 2.59 116.01 4.67 -56.49 -0.26 115.75 16 12 O -1.02 -51.54 16.84 -128.00 -2.16 -53.69 16 13 O -0.98 -42.42 11.49 -128.00 -1.47 -43.89 16 14 C -0.76 -28.82 10.06 66.67 0.67 -28.15 16 15 C 0.03 1.11 9.73 23.65 0.23 1.34 16 16 C -0.08 -2.71 4.07 -20.12 -0.08 -2.79 16 17 C -0.07 -2.29 6.36 22.52 0.14 -2.15 16 18 C -0.11 -3.03 10.03 22.23 0.22 -2.80 16 19 C -0.10 -2.36 9.82 22.34 0.22 -2.14 16 20 C -0.05 -1.33 6.31 22.29 0.14 -1.19 16 21 Cl -0.07 -1.54 28.95 -2.72 -0.08 -1.62 16 22 C -0.09 -2.54 9.57 22.54 0.22 -2.33 16 23 H 0.03 1.56 7.97 -2.38 -0.02 1.54 16 24 H 0.07 3.48 6.31 -2.39 -0.02 3.46 16 25 H 0.06 2.59 6.89 -2.38 -0.02 2.57 16 26 H 0.28 12.94 8.31 -92.71 -0.77 12.17 16 27 H 0.15 5.66 8.06 -2.91 -0.02 5.64 16 28 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 29 H 0.11 3.55 7.17 -2.91 -0.02 3.53 16 30 H 0.16 3.31 8.06 -2.91 -0.02 3.28 16 31 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 32 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -60.64 300.68 2.36 -58.28 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 1.14 Total: 17.96 kcal Atomic # 6 Polarization: -52.88 SS G_CDS: 4.13 Total: -48.75 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -0.98 Total: -85.65 kcal Atomic # 8 Polarization: -93.95 SS G_CDS: -3.63 Total: -97.58 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Atomic # 16 Polarization: 116.01 SS G_CDS: -0.26 Total: 115.75 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -60.64 2.36 -58.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588481147.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.013 kcal (2) G-P(sol) polarization free energy of solvation -60.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds