Wall clock time and date at job start Tue Mar 31 2020 07:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 120.00309 * 2 1 4 4 C 1.50698 * 109.47078 * 269.99873 * 3 2 1 5 5 H 1.08001 * 120.00333 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00119 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99987 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00160 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47143 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47160 * 119.99820 * 8 6 4 11 11 H 1.48503 * 109.46964 * 239.99767 * 8 6 4 12 12 C 1.34781 * 119.99796 * 179.97438 * 2 1 3 13 13 O 1.21639 * 119.99855 * 185.09636 * 12 2 1 14 14 C 1.47059 * 119.99690 * 5.09186 * 12 2 1 15 15 C 1.38515 * 126.89781 * 91.02669 * 14 12 2 16 16 Br 1.89095 * 127.33588 * 359.97438 * 15 14 12 17 17 C 1.39777 * 105.33150 * 180.25699 * 15 14 12 18 18 N 1.30846 * 107.87136 * 359.56442 * 17 15 14 19 19 N 1.28432 * 110.97073 * 0.45465 * 18 17 15 20 20 C 1.46494 * 125.19257 * 179.72639 * 19 18 17 21 21 H 1.08997 * 109.47662 * 264.59457 * 1 2 3 22 22 H 1.09001 * 109.46590 * 24.59273 * 1 2 3 23 23 H 1.08997 * 109.47361 * 144.58650 * 1 2 3 24 24 H 1.08997 * 109.47147 * 29.99782 * 3 2 1 25 25 H 1.09008 * 109.47519 * 149.99625 * 3 2 1 26 26 H 0.96996 * 120.00535 * 180.02562 * 7 6 4 27 27 H 1.08000 * 126.06412 * 179.73792 * 17 15 14 28 28 H 1.08994 * 109.47493 * 274.90417 * 20 19 18 29 29 H 1.09007 * 109.46695 * 34.90118 * 20 19 18 30 30 H 1.08996 * 109.47691 * 154.89790 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1271 2.8773 -1.6728 7 7 3.5544 3.6174 -0.6732 8 14 3.4378 3.4168 -3.4339 9 1 2.8599 2.4169 -4.3673 10 1 2.8009 4.7379 -3.6666 11 1 4.9004 3.5244 -3.6679 12 6 2.1388 -1.1673 0.0005 13 8 3.3516 -1.1693 0.0941 14 6 1.4078 -2.4383 -0.1119 15 6 1.0967 -3.1184 -1.2779 16 35 1.5195 -2.6104 -3.0495 17 6 0.3978 -4.2568 -0.8664 18 7 0.3245 -4.2327 0.4398 19 7 0.8989 -3.1861 0.9132 20 6 0.9946 -2.8455 2.3348 21 1 -0.3634 -0.0968 1.0230 22 1 -0.3632 0.9345 -0.4277 23 1 -0.3634 -0.8375 -0.5955 24 1 1.6085 2.0283 0.5138 25 1 3.1500 1.1383 0.5139 26 1 4.0313 4.4433 -0.8504 27 1 -0.0072 -5.0221 -1.5119 28 1 0.0909 -2.3207 2.6443 29 1 1.1032 -3.7584 2.9205 30 1 1.8609 -2.2044 2.4974 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693667382.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:56 Heat of formation + Delta-G solvation = 53.829485 kcal Electronic energy + Delta-G solvation = -17114.465692 eV Core-core repulsion = 14186.495317 eV Total energy + Delta-G solvation = -2927.970374 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 301.017 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.52976 -38.82451 -35.01087 -33.67705 -32.71872 -31.64779 -29.73882 -27.82977 -27.01829 -25.99718 -23.74117 -21.59978 -21.34005 -18.99738 -17.27384 -16.63505 -16.37189 -15.61863 -15.39392 -14.59970 -14.41485 -13.80718 -13.68226 -13.10957 -12.87168 -12.69155 -12.37896 -12.21634 -11.98428 -11.30209 -11.13391 -10.98443 -10.92855 -10.66665 -10.22501 -9.89159 -9.70072 -9.46199 -9.17208 -8.58843 -8.47608 -7.85757 -6.09559 -4.13976 1.59985 1.69550 2.44810 2.48834 3.08445 3.28506 3.36634 3.41811 3.70849 4.41242 4.46949 4.71195 4.96189 5.02275 5.25438 5.26119 5.36005 5.44505 5.59532 5.75964 6.11645 6.19275 6.60378 6.87943 7.26107 7.37365 7.87172 7.92874 8.11788 8.15019 8.65014 8.92636 9.51500 10.98937 Molecular weight = 301.02amu Principal moments of inertia in cm(-1) A = 0.018246 B = 0.006965 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.249354 B = 4018.864094 C = 5155.065850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.580 5.580 3 C 0.244 3.756 4 C -0.528 4.528 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.574 3.426 13 O -0.515 6.515 14 C 0.036 3.964 15 C -0.182 4.182 16 Br 0.002 6.998 17 C 0.037 3.963 18 N -0.286 5.286 19 N -0.272 5.272 20 C 0.087 3.913 21 H 0.044 0.956 22 H 0.083 0.917 23 H 0.056 0.944 24 H 0.038 0.962 25 H 0.048 0.952 26 H 0.263 0.737 27 H 0.192 0.808 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.060 -13.235 1.455 16.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.311 5.311 3 C 0.126 3.874 4 C -0.566 4.566 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.356 3.644 13 O -0.390 6.390 14 C -0.097 4.097 15 C -0.272 4.272 16 Br 0.086 6.914 17 C -0.143 4.143 18 N -0.116 5.116 19 N -0.059 5.059 20 C -0.053 4.053 21 H 0.062 0.938 22 H 0.102 0.898 23 H 0.075 0.925 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.208 0.792 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.557 -13.390 2.023 16.019 hybrid contribution 0.308 0.666 -1.288 1.482 sum -8.249 -12.724 0.736 15.182 Atomic orbital electron populations 1.21685 0.80922 1.03483 1.00175 1.48142 1.06510 1.07148 1.69281 1.19460 0.92639 0.77186 0.98139 1.21472 1.36605 1.06439 0.92107 0.91868 1.24912 0.95216 0.96306 0.97487 1.69931 1.38356 1.14372 1.30727 0.86456 0.78163 0.78391 0.84596 1.19591 1.20913 1.20809 1.16863 0.86616 0.81727 0.79220 1.90845 1.12673 1.86316 1.49157 1.21955 1.02487 0.97259 0.88025 1.22324 1.12009 1.00930 0.91942 1.96701 1.93540 1.91836 1.09332 1.23450 1.01871 0.98403 0.90609 1.73157 1.18088 1.07995 1.12380 1.45616 1.38242 1.14627 1.07386 1.22249 1.04756 1.03536 0.74797 0.93785 0.89778 0.92495 0.94379 0.93434 0.92698 0.79151 0.89286 0.88202 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.22 59.85 0.61 1.93 16 2 N -0.58 -12.07 2.86 -184.38 -0.53 -12.60 16 3 C 0.24 6.15 5.18 -5.20 -0.03 6.12 16 4 C -0.53 -14.59 9.39 -34.44 -0.32 -14.91 16 5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 8 Si 0.90 21.67 29.54 -169.99 -5.02 16.64 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.57 12.13 6.72 -12.68 -0.09 12.05 16 13 O -0.52 -13.00 16.66 5.24 0.09 -12.91 16 14 C 0.04 0.63 4.92 -82.01 -0.40 0.23 16 15 C -0.18 -2.99 6.63 -38.90 -0.26 -3.25 16 16 Br 0.00 0.04 33.98 -68.01 -2.31 -2.27 16 17 C 0.04 0.50 12.03 -17.40 -0.21 0.29 16 18 N -0.29 -4.10 11.90 30.61 0.36 -3.74 16 19 N -0.27 -3.98 3.75 -63.86 -0.24 -4.22 16 20 C 0.09 0.91 11.22 59.84 0.67 1.58 16 21 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.08 1.36 8.03 -51.93 -0.42 0.94 16 23 H 0.06 0.88 6.91 -51.93 -0.36 0.52 16 24 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 25 H 0.05 1.34 7.36 -51.92 -0.38 0.96 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 27 H 0.19 1.94 8.06 -52.49 -0.42 1.52 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 1.10 7.66 -51.93 -0.40 0.70 16 LS Contribution 291.68 15.07 4.40 4.40 Total: -1.00 -32.90 291.68 -5.85 -38.75 By element: Atomic # 1 Polarization: -1.28 SS G_CDS: -3.21 Total: -4.49 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -0.12 Total: 5.70 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.33 Total: -45.82 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 35 Polarization: 0.04 SS G_CDS: -2.31 Total: -2.27 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.90 -5.85 -38.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693667382.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.579 kcal (2) G-P(sol) polarization free energy of solvation -32.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds