Wall clock time and date at job start Tue Mar 31 2020 07:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86799 * 120.00141 * 2 1 4 4 H 1.48497 * 109.47391 * 270.00238 * 3 2 1 5 5 H 1.48503 * 109.46754 * 30.00179 * 3 2 1 6 6 H 1.48499 * 109.46947 * 149.99866 * 3 2 1 7 7 C 1.38953 * 119.99668 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99408 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99641 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99970 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99588 * 179.97438 * 10 9 7 13 13 O 1.45205 * 109.46923 * 179.97438 * 12 10 9 14 14 C 1.34735 * 116.99899 * 179.97438 * 13 12 10 15 15 O 1.21499 * 120.00015 * 0.02562 * 14 13 12 16 16 C 1.47488 * 119.99792 * 179.97438 * 14 13 12 17 17 C 1.39946 * 120.18384 * 269.99961 * 16 14 13 18 18 F 1.35098 * 120.11035 * 0.02562 * 17 16 14 19 19 C 1.38236 * 119.78720 * 179.97438 * 17 16 14 20 20 C 1.38300 * 120.15690 * 0.02562 * 19 17 16 21 21 C 1.38352 * 120.37395 * 0.25661 * 20 19 17 22 22 C 1.38065 * 120.21299 * 359.47995 * 21 20 19 23 23 Cl 1.73598 * 120.08461 * 180.28062 * 22 21 20 24 24 H 0.96996 * 119.99788 * 359.97438 * 1 2 3 25 25 H 0.96992 * 120.00183 * 359.97438 * 9 7 2 26 26 H 1.08994 * 109.47373 * 59.99841 * 12 10 9 27 27 H 1.08999 * 109.46640 * 299.99371 * 12 10 9 28 28 H 1.07996 * 119.92189 * 180.02562 * 19 17 16 29 29 H 1.08002 * 119.80784 * 179.97438 * 20 19 17 30 30 H 1.08005 * 119.89310 * 179.72503 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0011 12 6 1.2436 -4.8630 -0.0022 13 8 2.1872 -5.9667 -0.0027 14 6 1.6722 -7.2117 -0.0027 15 8 0.4677 -7.3709 -0.0028 16 6 2.5706 -8.3813 -0.0038 17 6 2.9983 -8.9390 -1.2140 18 9 2.5900 -8.4073 -2.3869 19 6 3.8408 -10.0349 -1.2054 20 6 4.2599 -10.5797 -0.0053 21 6 3.8365 -10.0373 1.1950 22 6 2.9993 -8.9394 1.2044 23 17 2.4759 -8.2571 2.7124 24 1 -0.4850 0.8400 0.0004 25 1 0.3534 -2.3907 -0.0016 26 1 0.6173 -4.9205 -0.8923 27 1 0.6168 -4.9208 0.8876 28 1 4.1725 -10.4667 -2.1381 29 1 4.9178 -11.4362 -0.0052 30 1 4.1650 -10.4717 2.1276 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731234370.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:39 Heat of formation + Delta-G solvation = -162.750964 kcal Electronic energy + Delta-G solvation = -21114.214359 eV Core-core repulsion = 17235.526981 eV Total energy + Delta-G solvation = -3878.687378 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 301.035 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.29626 -41.91859 -40.32471 -39.77479 -37.74255 -37.67286 -36.08462 -33.47810 -32.85994 -31.71219 -30.12557 -26.84945 -25.54184 -24.06009 -22.49513 -21.53294 -20.13504 -19.72496 -18.80502 -18.36699 -18.25904 -17.55046 -17.31384 -16.93358 -16.67684 -16.21723 -15.94043 -15.71850 -15.64158 -14.82080 -14.77567 -14.48098 -14.02091 -13.87476 -13.58937 -13.27828 -12.96431 -12.84887 -12.58548 -12.50903 -12.37730 -12.13291 -12.05039 -11.97712 -11.61736 -10.60306 -10.30736 -10.16019 -9.96580 -8.55352 -6.06565 -0.49653 -0.20644 0.62013 0.70197 1.18287 1.33593 1.42208 1.55683 1.81089 2.19635 2.26680 2.83109 2.87052 3.09544 3.36131 3.60888 3.64409 3.87547 4.02993 4.03630 4.13375 4.17190 4.49799 4.75746 4.89724 5.00163 5.04599 5.33968 5.49700 5.84007 6.21462 6.44300 6.98602 7.34051 7.87423 8.61724 Molecular weight = 301.03amu Principal moments of inertia in cm(-1) A = 0.024950 B = 0.003340 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.984872 B = 8379.998266 C = 8712.833803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.008 4.008 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.340 4.340 8 H 0.085 0.915 9 N -0.554 5.554 10 C 0.437 3.563 11 O -0.616 6.616 12 C 0.067 3.933 13 O -0.331 6.331 14 C 0.513 3.487 15 O -0.507 6.507 16 C -0.168 4.168 17 C 0.127 3.873 18 F -0.138 7.138 19 C -0.134 4.134 20 C -0.032 4.032 21 C -0.109 4.109 22 C 0.008 3.992 23 Cl -0.054 7.054 24 H 0.282 0.718 25 H 0.400 0.600 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.187 0.813 29 H 0.206 0.794 30 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.308 -23.673 1.084 24.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.209 4.209 3 Si 0.823 3.177 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.103 0.897 9 N -0.191 5.191 10 C 0.223 3.777 11 O -0.503 6.503 12 C -0.010 4.010 13 O -0.246 6.246 14 C 0.355 3.645 15 O -0.395 6.395 16 C -0.171 4.171 17 C 0.107 3.893 18 F -0.117 7.117 19 C -0.153 4.153 20 C -0.049 4.049 21 C -0.127 4.127 22 C -0.019 4.019 23 Cl -0.025 7.025 24 H 0.091 0.909 25 H 0.235 0.765 26 H 0.126 0.874 27 H 0.127 0.873 28 H 0.204 0.796 29 H 0.222 0.778 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 6.510 -23.423 1.180 24.340 hybrid contribution -0.970 1.525 -0.112 1.811 sum 5.540 -21.898 1.068 22.613 Atomic orbital electron populations 1.69674 1.07004 1.29852 1.48874 1.26165 0.96608 1.02644 0.95454 0.84830 0.77901 0.76146 0.78872 1.19353 1.19277 1.19474 1.19748 0.92994 0.83272 1.50889 0.89702 1.41714 1.09559 1.04080 1.63781 1.19938 0.88041 0.85184 0.84527 1.90527 1.15342 1.87595 1.56820 1.22667 0.90266 0.82487 1.05587 1.86706 1.40573 1.14490 1.82826 1.21365 0.87499 0.83645 0.71972 1.90840 1.16322 1.86959 1.45429 1.19045 1.05877 0.97231 0.94916 1.17890 0.97441 0.95454 0.78483 1.91546 1.88934 1.85921 1.45252 1.21727 0.96529 0.93690 1.03331 1.21838 0.95617 0.98867 0.88580 1.21619 0.95448 0.93003 1.02617 1.20952 0.98885 0.97184 0.84905 1.98431 1.89392 1.84618 1.30023 0.90856 0.76520 0.87380 0.87274 0.79607 0.77755 0.79887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.19 13.05 21.66 0.28 -48.91 16 2 C -0.01 -0.41 5.50 84.93 0.47 0.05 16 3 Si 1.00 42.51 29.55 68.60 2.03 44.54 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.34 -19.49 9.68 84.04 0.81 -18.68 16 8 H 0.09 5.15 7.16 -2.91 -0.02 5.12 16 9 N -0.55 -29.37 5.29 -306.97 -1.62 -30.99 16 10 C 0.44 22.44 7.86 87.66 0.69 23.13 16 11 O -0.62 -36.57 16.08 15.73 0.25 -36.31 16 12 C 0.07 2.76 5.95 71.24 0.42 3.19 16 13 O -0.33 -13.96 9.77 -50.07 -0.49 -14.45 16 14 C 0.51 18.97 6.09 70.26 0.43 19.40 16 15 O -0.51 -20.00 16.90 19.84 0.34 -19.66 16 16 C -0.17 -4.87 5.76 -20.04 -0.12 -4.99 16 17 C 0.13 3.06 7.29 22.68 0.17 3.22 16 18 F -0.14 -3.94 16.83 44.97 0.76 -3.18 16 19 C -0.13 -1.68 10.01 22.28 0.22 -1.45 16 20 C -0.03 -0.23 10.03 22.31 0.22 0.00 16 21 C -0.11 -1.33 9.81 22.26 0.22 -1.11 16 22 C 0.01 0.18 6.35 22.61 0.14 0.33 16 23 Cl -0.05 -1.38 28.04 -2.72 -0.08 -1.46 16 24 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 25 H 0.40 19.96 7.90 -92.71 -0.73 19.23 16 26 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 27 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 28 H 0.19 1.04 8.06 -2.91 -0.02 1.02 16 29 H 0.21 -0.61 8.06 -2.91 -0.02 -0.64 16 30 H 0.18 1.03 8.06 -2.91 -0.02 1.00 16 Total: -1.00 -77.06 304.99 5.64 -71.43 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.49 Total: 15.93 kcal Atomic # 6 Polarization: 19.39 SS G_CDS: 3.68 Total: 23.07 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -1.34 Total: -79.90 kcal Atomic # 8 Polarization: -70.53 SS G_CDS: 0.10 Total: -70.43 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.76 Total: -3.18 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.08 Total: -1.46 kcal Total: -77.06 5.64 -71.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731234370.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.326 kcal (2) G-P(sol) polarization free energy of solvation -77.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds