Wall clock time and date at job start Tue Mar 31 2020 07:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86796 * 120.00167 * 2 1 4 4 H 1.48505 * 109.46947 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47345 * 300.00643 * 3 2 1 6 6 H 1.48503 * 109.46943 * 60.00983 * 3 2 1 7 7 C 1.38955 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99547 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00158 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99801 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00202 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99775 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.46862 * 179.97438 * 12 10 9 14 14 C 1.34732 * 116.99922 * 180.02562 * 13 12 10 15 15 O 1.21494 * 119.99843 * 0.27073 * 14 13 12 16 16 C 1.47566 * 120.00189 * 180.02562 * 14 13 12 17 17 C 1.39712 * 120.16502 * 359.72198 * 16 14 13 18 18 C 1.37945 * 119.85876 * 179.76211 * 17 16 14 19 19 Cl 1.73596 * 119.90554 * 180.23259 * 18 17 16 20 20 C 1.38578 * 120.19680 * 0.49507 * 18 17 16 21 21 C 1.38192 * 120.34065 * 359.75677 * 20 18 17 22 22 C 1.38320 * 120.13421 * 0.02562 * 21 20 18 23 23 F 1.35103 * 120.09853 * 179.97438 * 22 21 20 24 24 H 0.97004 * 119.99444 * 359.97438 * 1 2 3 25 25 H 0.96998 * 119.99553 * 359.97438 * 9 7 2 26 26 H 1.09006 * 109.46881 * 59.99530 * 12 10 9 27 27 H 1.08998 * 109.46923 * 299.99608 * 12 10 9 28 28 H 1.08004 * 120.07026 * 359.97438 * 17 16 14 29 29 H 1.08003 * 119.83535 * 179.73763 * 20 18 17 30 30 H 1.07998 * 119.93913 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8896 2.3963 1.2127 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8630 -0.0011 13 8 2.1871 -5.9666 -0.0016 14 6 1.6722 -7.2116 -0.0027 15 8 0.4677 -7.3708 -0.0082 16 6 2.5710 -8.3819 -0.0027 17 6 3.9566 -8.2029 -0.0074 18 6 4.7910 -9.3014 -0.0024 19 17 6.5129 -9.0803 -0.0021 20 6 4.2589 -10.5809 -0.0031 21 6 2.8896 -10.7675 -0.0037 22 6 2.0401 -9.6759 -0.0042 23 9 0.7015 -9.8592 -0.0053 24 1 -0.4849 0.8401 0.0004 25 1 0.3533 -2.3906 0.0002 26 1 0.6172 -4.9204 -0.8914 27 1 0.6167 -4.9209 0.8886 28 1 4.3736 -7.2066 -0.0115 29 1 4.9176 -11.4368 -0.0034 30 1 2.4819 -11.7675 -0.0046 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731237250.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:43 Heat of formation + Delta-G solvation = -144.217944 kcal Electronic energy + Delta-G solvation = -20835.904471 eV Core-core repulsion = 16958.020745 eV Total energy + Delta-G solvation = -3877.883726 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 301.035 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.24459 -40.54353 -39.18095 -38.10965 -36.75797 -36.14436 -34.02717 -32.19460 -31.39356 -30.70118 -28.45820 -25.18130 -24.30966 -23.17176 -21.25029 -19.62340 -18.46968 -18.11413 -17.73887 -17.08834 -16.56122 -16.39743 -15.93651 -15.80600 -15.39938 -14.71869 -14.45396 -14.10329 -13.98682 -13.77626 -13.58495 -13.27681 -12.84469 -12.39366 -12.06374 -12.00419 -11.64061 -11.61087 -11.37863 -11.16674 -10.57523 -10.49547 -10.40214 -10.31542 -9.74380 -9.63550 -9.03694 -8.55862 -8.10474 -6.51855 -3.93928 0.09702 0.55214 1.68952 2.24088 2.46685 3.10374 3.12408 3.23127 3.30410 3.66838 3.70897 4.03411 4.12478 4.30832 4.52888 4.64711 4.92690 5.00619 5.13074 5.25054 5.39795 5.50468 5.51966 5.65336 5.68625 6.01036 6.10621 6.45241 7.46429 7.67815 7.92462 8.45834 9.05122 9.36941 9.86311 10.65359 Molecular weight = 301.03amu Principal moments of inertia in cm(-1) A = 0.021009 B = 0.003163 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.424295 B = 8851.384777 C =10168.662305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.302 4.302 8 H 0.107 0.893 9 N -0.551 5.551 10 C 0.438 3.562 11 O -0.576 6.576 12 C 0.062 3.938 13 O -0.318 6.318 14 C 0.504 3.496 15 O -0.494 6.494 16 C -0.145 4.145 17 C -0.020 4.020 18 C -0.064 4.064 19 Cl -0.051 7.051 20 C -0.048 4.048 21 C -0.157 4.157 22 C 0.169 3.831 23 F -0.109 7.109 24 H 0.274 0.726 25 H 0.395 0.605 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.166 0.834 29 H 0.150 0.850 30 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.746 -21.194 -0.001 21.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.125 0.875 9 N -0.189 5.189 10 C 0.223 3.777 11 O -0.460 6.460 12 C -0.016 4.016 13 O -0.233 6.233 14 C 0.347 3.653 15 O -0.383 6.383 16 C -0.147 4.147 17 C -0.039 4.039 18 C -0.091 4.091 19 Cl -0.022 7.022 20 C -0.067 4.067 21 C -0.176 4.176 22 C 0.149 3.851 23 F -0.086 7.086 24 H 0.084 0.916 25 H 0.229 0.771 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.184 0.816 29 H 0.168 0.832 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.161 -21.008 -0.006 21.893 hybrid contribution -0.572 0.866 0.002 1.038 sum 5.589 -20.141 -0.004 20.903 Atomic orbital electron populations 1.69625 1.06018 1.28422 1.49605 1.25323 0.95691 0.99899 0.96844 0.85739 0.79724 0.80714 0.77820 1.19056 1.20607 1.20603 1.19782 0.93522 0.81697 1.48143 0.87508 1.41701 1.09403 1.04065 1.63686 1.19266 0.88326 0.83996 0.86129 1.90562 1.13339 1.86753 1.55330 1.22826 0.90752 0.84169 1.03807 1.86567 1.40090 1.13608 1.83016 1.20699 0.86842 0.83752 0.73961 1.90904 1.15413 1.86819 1.45146 1.19137 0.93440 0.90470 1.11665 1.21485 0.90507 1.00473 0.91425 1.20839 0.86291 0.94425 1.07515 1.98408 1.09368 1.97470 1.96906 1.21166 0.94624 0.96196 0.94721 1.21062 0.92606 0.98772 1.05155 1.17748 0.78280 0.92196 0.96925 1.91634 1.28815 1.95752 1.92440 0.91647 0.77124 0.89257 0.89258 0.81615 0.83200 0.82714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.91 13.05 55.50 0.72 -23.18 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 8 H 0.11 3.05 7.16 -52.49 -0.38 2.67 16 9 N -0.55 -13.79 5.29 -10.96 -0.06 -13.85 16 10 C 0.44 10.41 7.86 -10.98 -0.09 10.32 16 11 O -0.58 -15.67 16.08 -14.11 -0.23 -15.90 16 12 C 0.06 1.17 5.95 36.01 0.21 1.38 16 13 O -0.32 -5.86 9.01 -47.26 -0.43 -6.28 16 14 C 0.50 8.30 7.89 34.54 0.27 8.57 16 15 O -0.49 -9.00 15.13 -19.26 -0.29 -9.29 16 16 C -0.14 -1.89 5.88 -104.93 -0.62 -2.51 16 17 C -0.02 -0.23 9.39 -39.14 -0.37 -0.60 16 18 C -0.06 -0.60 6.31 -39.56 -0.25 -0.85 16 19 Cl -0.05 -0.47 28.95 -51.86 -1.50 -1.97 16 20 C -0.05 -0.34 9.82 -39.47 -0.39 -0.73 16 21 C -0.16 -1.20 10.01 -39.57 -0.40 -1.59 16 22 C 0.17 1.91 7.29 -38.94 -0.28 1.63 16 23 F -0.11 -1.43 15.55 2.25 0.04 -1.40 16 24 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 25 H 0.40 9.38 7.90 -40.82 -0.32 9.06 16 26 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 27 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 28 H 0.17 2.07 7.61 -52.48 -0.40 1.67 16 29 H 0.15 0.62 8.06 -52.48 -0.42 0.20 16 30 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 302.87 15.07 4.56 4.56 Total: -1.00 -31.90 302.87 -6.27 -38.17 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -1.92 Total: 5.85 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -2.14 Total: 7.77 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.67 Total: -37.03 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.94 Total: -31.48 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.90 -6.27 -38.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731237250.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.051 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds