Wall clock time and date at job start Tue Mar 31 2020 07:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31385 * 1 3 3 Si 1.86797 * 120.00175 * 2 1 4 4 H 1.48502 * 109.46908 * 275.52651 * 3 2 1 5 5 H 1.48496 * 109.47267 * 35.52508 * 3 2 1 6 6 H 1.48500 * 109.47004 * 155.52568 * 3 2 1 7 7 C 1.39028 * 119.99519 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00116 * 350.92213 * 7 2 1 9 9 N 1.36892 * 120.00000 * 170.65457 * 7 2 1 10 10 C 1.46504 * 120.00110 * 320.26320 * 9 7 2 11 11 C 1.50696 * 109.47134 * 269.30579 * 10 9 7 12 12 O 1.20835 * 120.00080 * 5.19204 * 11 10 9 13 13 O 1.34226 * 120.00527 * 185.19446 * 11 10 9 14 14 C 1.34780 * 120.00593 * 140.25980 * 9 7 2 15 15 O 1.21613 * 120.00528 * 167.29967 * 14 9 7 16 16 C 1.47543 * 119.99690 * 347.30498 * 14 9 7 17 17 C 1.39762 * 120.13424 * 333.35031 * 16 14 9 18 18 C 1.37764 * 119.88455 * 179.72172 * 17 16 14 19 19 C 1.38729 * 120.16291 * 0.55041 * 18 17 16 20 20 F 1.35100 * 119.86318 * 179.74274 * 19 18 17 21 21 C 1.38577 * 120.27025 * 359.72796 * 19 18 17 22 22 C 1.38010 * 120.11681 * 359.97438 * 21 19 18 23 23 Cl 1.73593 * 120.08377 * 179.97438 * 22 21 19 24 24 H 0.96998 * 119.99686 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.46754 * 29.30065 * 10 9 7 26 26 H 1.08998 * 109.47355 * 149.29951 * 10 9 7 27 27 H 0.96694 * 117.00472 * 180.02562 * 13 11 10 28 28 H 1.07999 * 120.05819 * 359.97438 * 17 16 14 29 29 H 1.08001 * 119.91561 * 180.25496 * 18 17 16 30 30 H 1.08003 * 119.94061 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.3786 2.1137 -1.3936 5 1 1.5087 2.6161 0.8135 6 1 3.5989 1.4092 0.5800 7 6 2.0089 -1.2041 -0.0005 8 1 1.4790 -2.1335 0.1466 9 7 3.3642 -1.2120 -0.1931 10 6 3.9698 -0.3092 -1.1752 11 6 4.0446 -0.9993 -2.5127 12 8 3.5501 -2.0924 -2.6571 13 8 4.6605 -0.4000 -3.5438 14 6 4.1415 -2.0502 0.5209 15 8 5.3005 -2.2282 0.1982 16 6 3.5863 -2.7519 1.6940 17 6 2.5200 -2.1946 2.4052 18 6 2.0018 -2.8571 3.4963 19 6 2.5433 -4.0698 3.8973 20 9 2.0338 -4.7116 4.9714 21 6 3.6044 -4.6255 3.2005 22 6 4.1283 -3.9746 2.1021 23 17 5.4580 -4.6713 1.2302 24 1 -0.4849 0.8401 0.0004 25 1 3.3619 0.5912 -1.2644 26 1 4.9741 -0.0387 -0.8492 27 1 4.6827 -0.8815 -4.3820 28 1 2.1003 -1.2483 2.0974 29 1 1.1752 -2.4289 4.0438 30 1 4.0216 -5.5701 3.5171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739087431.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:34 Heat of formation + Delta-G solvation = -137.767980 kcal Electronic energy + Delta-G solvation = -22428.039406 eV Core-core repulsion = 18550.435372 eV Total energy + Delta-G solvation = -3877.604034 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 301.035 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.01595 -41.76369 -40.75196 -39.16019 -37.48270 -37.19679 -36.74848 -34.06661 -32.38109 -31.77959 -29.70800 -27.11565 -24.59779 -24.05989 -23.04797 -21.25505 -19.69253 -19.28623 -18.70950 -18.63175 -17.82733 -17.30181 -16.90027 -16.72624 -16.65952 -16.32379 -15.80539 -15.52547 -14.81687 -14.78666 -14.65636 -14.36151 -14.30591 -13.85507 -13.71666 -13.48032 -12.98782 -12.61048 -12.44503 -12.33064 -12.19579 -12.02370 -11.90507 -11.56856 -11.11864 -10.61621 -10.05148 -9.92605 -9.72491 -8.50934 -6.22996 -0.36878 0.08513 1.03812 1.13782 1.23522 1.34270 1.44302 1.61702 1.95832 2.12760 2.48476 2.55561 3.00309 3.15241 3.69962 3.75649 3.84840 3.93831 4.12302 4.18830 4.37115 4.43035 4.82239 4.88619 5.16841 5.21788 5.25907 5.57786 5.69819 5.96612 6.13230 6.82560 6.98438 7.17808 7.52425 8.60410 Molecular weight = 301.03amu Principal moments of inertia in cm(-1) A = 0.014797 B = 0.007181 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.760503 B = 3898.120240 C = 5307.731196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.029 3.971 3 Si 0.915 3.085 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.242 1.242 7 C -0.331 4.331 8 H 0.077 0.923 9 N -0.455 5.455 10 C 0.102 3.898 11 C 0.468 3.532 12 O -0.534 6.534 13 O -0.509 6.509 14 C 0.527 3.473 15 O -0.578 6.578 16 C -0.134 4.134 17 C -0.022 4.022 18 C -0.160 4.160 19 C 0.131 3.869 20 F -0.128 7.128 21 C -0.159 4.159 22 C 0.019 3.981 23 Cl -0.044 7.044 24 H 0.285 0.715 25 H 0.105 0.895 26 H 0.131 0.869 27 H 0.424 0.576 28 H 0.163 0.837 29 H 0.166 0.834 30 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.399 -0.689 4.235 6.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.177 4.177 3 Si 0.740 3.260 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.166 1.166 7 C -0.458 4.458 8 H 0.095 0.905 9 N -0.176 5.176 10 C -0.022 4.022 11 C 0.309 3.691 12 O -0.422 6.422 13 O -0.322 6.322 14 C 0.318 3.682 15 O -0.461 6.461 16 C -0.138 4.138 17 C -0.040 4.040 18 C -0.178 4.178 19 C 0.111 3.889 20 F -0.107 7.107 21 C -0.178 4.178 22 C -0.009 4.009 23 Cl -0.015 7.015 24 H 0.095 0.905 25 H 0.122 0.878 26 H 0.149 0.851 27 H 0.286 0.714 28 H 0.181 0.819 29 H 0.183 0.817 30 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 5.746 -0.846 4.331 7.245 hybrid contribution -0.166 0.082 -0.916 0.934 sum 5.581 -0.764 3.415 6.587 Atomic orbital electron populations 1.69712 1.07327 1.29635 1.45640 1.25966 0.95896 1.01117 0.94718 0.86274 0.80496 0.79650 0.79610 1.18160 1.20149 1.16576 1.18818 0.80046 0.95029 1.51953 0.90516 1.43277 1.07129 1.36439 1.30782 1.21587 1.02643 0.93493 0.84459 1.24275 0.73391 0.84208 0.87191 1.90682 1.44783 1.22591 1.84189 1.84482 1.71649 1.52672 1.23434 1.18327 0.85014 0.81607 0.83253 1.90698 1.18333 1.65700 1.71417 1.19773 0.99782 0.95821 0.98391 1.21926 0.90430 1.00947 0.90706 1.21448 1.02931 0.94706 0.98738 1.17639 0.93887 0.91884 0.85461 1.91521 1.85886 1.81018 1.52231 1.20933 0.98294 1.02964 0.95641 1.20770 0.92162 0.93364 0.94636 1.98377 1.44516 1.83031 1.75544 0.90492 0.87808 0.85113 0.71409 0.81938 0.81680 0.81207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.77 13.96 21.68 0.30 -44.46 16 2 C 0.03 1.36 5.13 84.95 0.44 1.79 16 3 Si 0.92 35.21 24.58 68.60 1.69 36.90 16 4 H -0.26 -9.32 6.93 99.48 0.69 -8.63 16 5 H -0.28 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.24 -8.78 6.63 99.48 0.66 -8.12 16 7 C -0.33 -16.10 6.47 84.09 0.54 -15.56 16 8 H 0.08 4.20 7.35 -2.91 -0.02 4.18 16 9 N -0.45 -20.75 1.72 -643.19 -1.10 -21.86 16 10 C 0.10 4.15 4.31 85.63 0.37 4.52 16 11 C 0.47 18.88 8.39 71.23 0.60 19.47 16 12 O -0.53 -25.68 17.20 21.94 0.38 -25.30 16 13 O -0.51 -15.20 13.42 -51.38 -0.69 -15.89 16 14 C 0.53 23.93 7.19 86.70 0.62 24.55 16 15 O -0.58 -27.37 14.37 -4.07 -0.06 -27.42 16 16 C -0.13 -5.40 5.50 -20.07 -0.11 -5.51 16 17 C -0.02 -0.79 8.12 22.53 0.18 -0.61 16 18 C -0.16 -4.81 10.01 22.27 0.22 -4.59 16 19 C 0.13 3.75 7.31 22.47 0.16 3.91 16 20 F -0.13 -3.36 17.26 44.97 0.78 -2.59 16 21 C -0.16 -4.65 9.79 22.30 0.22 -4.43 16 22 C 0.02 0.68 6.34 22.60 0.14 0.82 16 23 Cl -0.04 -1.59 26.39 -2.72 -0.07 -1.66 16 24 H 0.28 13.29 8.31 -92.71 -0.77 12.52 16 25 H 0.10 4.04 2.61 -2.38 -0.01 4.04 16 26 H 0.13 4.76 7.65 -2.39 -0.02 4.75 16 27 H 0.42 8.50 9.10 -74.06 -0.67 7.83 16 28 H 0.16 6.48 5.49 -2.91 -0.02 6.46 16 29 H 0.17 4.12 8.06 -2.91 -0.02 4.10 16 30 H 0.17 3.96 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -61.66 284.73 5.11 -56.55 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.50 Total: 21.38 kcal Atomic # 6 Polarization: 20.97 SS G_CDS: 3.39 Total: 24.36 kcal Atomic # 7 Polarization: -65.52 SS G_CDS: -0.80 Total: -66.32 kcal Atomic # 8 Polarization: -68.24 SS G_CDS: -0.37 Total: -68.61 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.78 Total: -2.59 kcal Atomic # 14 Polarization: 35.21 SS G_CDS: 1.69 Total: 36.90 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.07 Total: -1.66 kcal Total: -61.66 5.11 -56.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739087431.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.222 kcal (2) G-P(sol) polarization free energy of solvation -61.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds