Wall clock time and date at job start Tue Mar 31 2020 07:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31359 * 1 3 3 Si 1.86807 * 119.99797 * 2 1 4 4 H 1.48501 * 109.47095 * 239.99975 * 3 2 1 5 5 H 1.48505 * 109.46679 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47074 * 119.99630 * 3 2 1 7 7 C 1.39050 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99679 * 192.55241 * 7 2 1 9 9 N 1.36868 * 119.99875 * 12.54487 * 7 2 1 10 10 C 1.46498 * 119.99981 * 11.36417 * 9 7 2 11 11 C 1.50701 * 109.47299 * 272.63150 * 10 9 7 12 12 O 1.20832 * 120.00044 * 0.02562 * 11 10 9 13 13 O 1.34230 * 120.00538 * 179.97438 * 11 10 9 14 14 C 1.34778 * 119.99951 * 191.36364 * 9 7 2 15 15 O 1.21593 * 119.99972 * 4.50580 * 14 9 7 16 16 C 1.47726 * 120.00136 * 184.50286 * 14 9 7 17 17 C 1.39648 * 120.13324 * 308.66155 * 16 14 9 18 18 C 1.38155 * 119.84497 * 180.02562 * 17 16 14 19 19 F 1.35106 * 119.94253 * 180.02562 * 18 17 16 20 20 C 1.38585 * 120.11681 * 359.97438 * 18 17 16 21 21 C 1.38429 * 120.26764 * 0.02562 * 20 18 17 22 22 Cl 1.73601 * 119.92418 * 180.02562 * 21 20 18 23 23 C 1.38086 * 120.15337 * 359.97438 * 21 20 18 24 24 H 0.97004 * 120.00500 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47368 * 32.63185 * 10 9 7 26 26 H 1.08996 * 109.47236 * 152.63550 * 10 9 7 27 27 H 0.96693 * 117.00040 * 180.02562 * 13 11 10 28 28 H 1.07993 * 120.07245 * 0.04156 * 17 16 14 29 29 H 1.08000 * 119.87200 * 180.02562 * 20 18 17 30 30 H 1.08005 * 120.06346 * 179.72254 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.1013 1.6965 -1.2125 5 1 1.2824 2.7465 -0.0006 6 1 3.1012 1.6965 1.2125 7 6 2.0089 -1.2042 -0.0005 8 1 3.0695 -1.2153 0.2027 9 7 1.3491 -2.3752 -0.2585 10 6 -0.0213 -2.3454 -0.7754 11 6 -0.9912 -2.2801 0.3762 12 8 -0.5799 -2.2601 1.5121 13 8 -2.3121 -2.2432 0.1400 14 6 1.9603 -3.5559 -0.0370 15 8 3.0659 -3.5829 0.4683 16 6 1.2869 -4.8173 -0.4082 17 6 -0.0188 -5.0671 0.0195 18 6 -0.6427 -6.2490 -0.3307 19 9 -1.9061 -6.4925 0.0816 20 6 0.0247 -7.1848 -1.1049 21 6 1.3190 -6.9420 -1.5315 22 17 2.1464 -8.1201 -2.5017 23 6 1.9532 -5.7645 -1.1880 24 1 -0.4851 0.8400 -0.0004 25 1 -0.1513 -1.4687 -1.4100 26 1 -0.2095 -3.2470 -1.3582 27 1 -2.8948 -2.2014 0.9105 28 1 -0.5397 -4.3380 0.6223 29 1 -0.4670 -8.1072 -1.3767 30 1 2.9647 -5.5785 -1.5179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833065737.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:37 Heat of formation + Delta-G solvation = -128.509032 kcal Electronic energy + Delta-G solvation = -22581.365117 eV Core-core repulsion = 18704.162581 eV Total energy + Delta-G solvation = -3877.202536 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 301.035 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.89679 -40.11989 -38.86278 -37.79810 -36.42010 -35.39675 -34.61650 -32.18510 -30.83741 -30.38743 -27.86732 -25.56940 -23.36327 -22.68613 -21.23319 -19.88117 -17.63794 -17.30733 -16.98301 -16.73252 -16.36482 -15.91319 -15.67373 -15.54640 -14.85776 -14.75380 -14.28548 -14.23148 -13.58113 -13.25818 -13.01761 -12.95412 -12.13869 -11.94292 -11.80330 -11.66789 -11.52231 -11.23733 -11.12994 -10.99039 -10.59099 -10.48129 -10.43886 -9.76427 -9.22648 -9.05162 -8.73008 -8.69477 -8.19930 -6.63965 -4.09181 0.87587 1.04663 1.93874 2.98805 3.13590 3.17063 3.21419 3.41323 3.67718 3.84909 4.10209 4.27388 4.43946 4.80330 4.90966 4.95835 5.12596 5.20952 5.46691 5.75866 5.82739 5.96963 6.03687 6.30618 6.39721 6.56294 6.68327 7.32509 7.44546 7.70012 8.13834 8.84240 8.93405 9.07282 9.56103 10.41837 Molecular weight = 301.03amu Principal moments of inertia in cm(-1) A = 0.018786 B = 0.005563 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.117199 B = 5031.614673 C = 6140.613429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.030 3.970 3 Si 0.944 3.056 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.293 4.293 8 H 0.114 0.886 9 N -0.413 5.413 10 C 0.138 3.862 11 C 0.498 3.502 12 O -0.511 6.511 13 O -0.531 6.531 14 C 0.482 3.518 15 O -0.564 6.564 16 C -0.049 4.049 17 C -0.136 4.136 18 C 0.112 3.888 19 F -0.132 7.132 20 C -0.146 4.146 21 C -0.011 4.011 22 Cl -0.061 7.061 23 C -0.082 4.082 24 H 0.277 0.723 25 H 0.139 0.861 26 H 0.076 0.924 27 H 0.393 0.607 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.193 -9.253 -5.738 11.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.172 4.172 3 Si 0.770 3.230 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.420 4.420 8 H 0.132 0.868 9 N -0.130 5.130 10 C 0.012 3.988 11 C 0.340 3.660 12 O -0.398 6.398 13 O -0.342 6.342 14 C 0.271 3.729 15 O -0.448 6.448 16 C -0.053 4.053 17 C -0.156 4.156 18 C 0.092 3.908 19 F -0.111 7.111 20 C -0.166 4.166 21 C -0.037 4.037 22 Cl -0.032 7.032 23 C -0.102 4.102 24 H 0.088 0.912 25 H 0.156 0.844 26 H 0.094 0.906 27 H 0.249 0.751 28 H 0.161 0.839 29 H 0.163 0.837 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.364 -9.186 -5.583 11.264 hybrid contribution -0.534 0.776 0.704 1.176 sum -3.898 -8.410 -4.879 10.476 Atomic orbital electron populations 1.69479 1.06224 1.28450 1.48732 1.25334 0.95578 1.00363 0.95934 0.85690 0.78729 0.79243 0.79317 1.19552 1.20739 1.19580 1.19847 0.94886 0.81767 1.45506 0.86848 1.43370 1.10219 1.05279 1.54132 1.20992 0.80747 1.04272 0.92747 1.23467 0.80776 0.70298 0.91488 1.90637 1.78453 1.46135 1.24531 1.84517 1.19564 1.86911 1.43212 1.17604 0.87687 0.82302 0.85322 1.90672 1.20979 1.85917 1.47264 1.20077 0.92636 0.96552 0.96052 1.21732 0.95275 0.97045 1.01504 1.17244 0.80375 0.94684 0.98500 1.91525 1.36555 1.94423 1.88553 1.20934 0.94166 1.00689 1.00787 1.20415 0.93051 0.91900 0.98382 1.98371 1.78222 1.57157 1.69443 1.21153 1.00909 0.91049 0.97079 0.91178 0.84357 0.90618 0.75073 0.83884 0.83656 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.91 8.21 55.50 0.46 -21.46 16 2 C 0.03 0.74 5.18 -17.45 -0.09 0.65 16 3 Si 0.94 19.73 29.57 -169.99 -5.03 14.71 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.29 -7.70 9.43 -15.00 -0.14 -7.84 16 8 H 0.11 3.09 7.28 -52.49 -0.38 2.71 16 9 N -0.41 -10.09 2.12 -117.21 -0.25 -10.34 16 10 C 0.14 2.96 4.80 -5.19 -0.02 2.94 16 11 C 0.50 10.83 3.82 36.01 0.14 10.97 16 12 O -0.51 -12.98 16.20 -18.76 -0.30 -13.29 16 13 O -0.53 -9.45 13.42 -39.26 -0.53 -9.98 16 14 C 0.48 11.52 7.16 -12.38 -0.09 11.44 16 15 O -0.56 -15.27 16.68 5.28 0.09 -15.18 16 16 C -0.05 -0.94 4.81 -104.98 -0.50 -1.45 16 17 C -0.14 -2.43 7.64 -39.09 -0.30 -2.72 16 18 C 0.11 1.69 7.29 -39.48 -0.29 1.41 16 19 F -0.13 -1.96 17.26 2.25 0.04 -1.92 16 20 C -0.15 -1.92 9.80 -39.38 -0.39 -2.31 16 21 C -0.01 -0.15 6.31 -39.57 -0.25 -0.40 16 22 Cl -0.06 -0.72 28.95 -51.86 -1.50 -2.22 16 23 C -0.08 -1.33 9.52 -39.12 -0.37 -1.71 16 24 H 0.28 6.57 8.31 -40.82 -0.34 6.23 16 25 H 0.14 3.05 6.28 -51.93 -0.33 2.72 16 26 H 0.08 1.39 5.79 -51.93 -0.30 1.09 16 27 H 0.39 5.38 9.10 45.56 0.41 5.80 16 28 H 0.14 2.80 4.40 -52.49 -0.23 2.57 16 29 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.15 2.30 8.06 -52.48 -0.42 1.88 16 LS Contribution 286.76 15.07 4.32 4.32 Total: -1.00 -30.37 286.76 -5.82 -36.18 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -0.80 Total: 8.21 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: -2.31 Total: 10.97 kcal Atomic # 7 Polarization: -32.01 SS G_CDS: 0.21 Total: -31.80 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -0.74 Total: -38.45 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.71 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.37 -5.82 -36.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833065737.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.328 kcal (2) G-P(sol) polarization free energy of solvation -30.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds